Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

49363246 .. 49363765

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTGATCAAATGGCACCCTCCTCCTGAAGGTAAAATCAAAATCAATTTTGATGGCTCTGTTTCAAGCTCAAAAGCAGCTTGTGGATTTATATGTAGAGACACCAATGGTAACCTAACAACGGCGGTGTCCAAGAAGATCGGTACCAACACTGTGCCAACTGCTGAGGTGATAGCCTTAAGAGACAGTCTCTGGATGGCTGCACAAAAAGGCTACAAGAATGTACAAGTTGAAGGAGATTCCAAGTTAGTGATCGATGCAGTGAATGGCAAAATATCACCACCCTGGAGACTTGCACAAATTATCAATGATATAAGGAAGATCATCTGCAACTTTGATTCCATTTCCTTCAGTCATATATATAGGGAAGCGAACTTTGCCGCTGATGCATGTGCAAACCTTGGACACAACTACGCTATGGAAAAAGTGTGGGAGAAACACTTGCATCCCAACATTTCAAGAGCAATGTTATTTGATAGGCTAGGATCAGGGTGCACTAGAGGCACTTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

171

Amino Acids

18.8

Weight (kDa)

9.16

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	16 - 134	1.4e-28	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	15, 143
AciI	CCGC	2 cut(s)	125, 381
AclWI	GGATC	1 cut(s)	493
AcuI	CTGAAG	2 cut(s)	48, 334
AfaI	GTAC	2 cut(s)	145, 225
AfiI	CCNNNNNNNGG	2 cut(s)	29, 121
AflII	CTTAAG	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	66, 233, 459
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	2 cut(s)	69, 80
AluI	AGCT	2 cut(s)	69, 80
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	4 cut(s)	93, 177, 194, 283
Alw44I	GTGCAC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	493
AlwNI	CAGNNNCTG	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	77, 200
Asp718I	GGTACC	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	16, 181, 270
BaeGI	GKGCMC	1 cut(s)	497
BanI	GGYRCC	2 cut(s)	15, 143
Bbv12I	GWGCWC	1 cut(s)	497
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	89, 187
BccI	CCATC	2 cut(s)	47, 190
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	4 cut(s)	93, 177, 194, 283
BfaI	CTAG	2 cut(s)	482, 498
BfrI	CTTAAG	1 cut(s)	178
BisI	GCNGC	3 cut(s)	78, 201, 381
BlsI	GCNGC	3 cut(s)	79, 202, 382
Bme1390I	CCNGG	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	17, 145
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	247, 376, 454
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpmI	CTGGAG	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	284, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 121
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	286
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	284, 400
BseGI	GGATG	2 cut(s)	201, 445
BseLI	CCNNNNNNNGG	2 cut(s)	29, 121
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	89, 187
BsgI	GTGCAG	1 cut(s)	186
BshNI	GGYRCC	2 cut(s)	15, 143
BshVI	ATCGAT	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	29, 121
BsmAI	GTCTC	4 cut(s)	93, 177, 194, 283
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	6, 138, 252, 321, 485
BspACI	CCGC	2 cut(s)	125, 381
BspCNI	CTCAG	1 cut(s)	157
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	17, 145
BspPI	GGATC	1 cut(s)	493
BspT107I	GGYRCC	2 cut(s)	15, 143
BspTI	CTTAAG	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	471
BsrGI	TGTACA	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	284, 400
BssMI	GATC	5 cut(s)	6, 138, 252, 321, 485
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	154, 188
BstAFI	CTTAAG	1 cut(s)	178
BstAUI	TGTACA	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	201, 445
BstKTI	GATC	5 cut(s)	9, 141, 255, 324, 488
BstMAI	GTCTC	4 cut(s)	93, 177, 194, 283
BstMBI	GATC	5 cut(s)	6, 138, 252, 321, 485
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 386, 501
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	393
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	89, 187
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	201, 445
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	150, 267
CaiI	CAGNNNCTG	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	144, 224
CviAII	CATG	1 cut(s)	390
CviJI	RGCY	7 cut(s)	57, 69, 80, 176, 200, 213, 481
CviKI_1	RGCY	7 cut(s)	57, 69, 80, 176, 200, 213, 481
CviQI	GTAC	2 cut(s)	144, 224
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	5 cut(s)	8, 140, 254, 323, 487
DpnII	GATC	5 cut(s)	6, 138, 252, 321, 485
Eco130I	CCWWGG	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	48, 334
Eco91I	GGTNACC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	1 cut(s)	393
FaiI	YATR	9 cut(s)	92, 94, 314, 357, 359, 361, 363, 391, 419
FatI	CATG	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	78, 201, 381
FokI	GGATG	2 cut(s)	208, 432
Fsp4HI	GCNGC	3 cut(s)	78, 201, 381
FspBI	CTAG	2 cut(s)	482, 498
GluI	GCNGC	3 cut(s)	78, 201, 381
GsuI	CTGGAG	1 cut(s)	307
Hin1II	CATG	1 cut(s)	393
HinfI	GANTC	2 cut(s)	239, 338
HphI	GGTGA	3 cut(s)	16, 181, 270
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188III	TCNNGA	3 cut(s)	26, 193, 459
Hpy8I	GTNNAC	1 cut(s)	495
HpyAV	CCTTC	3 cut(s)	23, 227, 358
HpyCH4III	ACNGT	2 cut(s)	154, 188
HpyCH4V	TGCA	8 cut(s)	203, 260, 296, 330, 389, 395, 445, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 386, 501
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	393
KpnI	GGTACC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	6, 138, 252, 321, 485
LpnPI	CCDG	5 cut(s)	39, 178, 271, 298, 474
Lsp1109I	GCAGC	2 cut(s)	89, 187
LweI	GCATC	3 cut(s)	247, 376, 454
MaeI	CTAG	2 cut(s)	482, 498
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	5 cut(s)	8, 140, 254, 323, 487
MboI	GATC	5 cut(s)	6, 138, 252, 321, 485
MboII	GAAGA	2 cut(s)	148, 331
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	2 cut(s)	46, 300
MnlI	CCTC	4 cut(s)	30, 33, 160, 494
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	377, 386, 501
NdeII	GATC	5 cut(s)	6, 138, 252, 321, 485
NlaIII	CATG	1 cut(s)	393
NlaIV	GGNNCC	2 cut(s)	17, 145
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	239, 338
PkrI	GCNGC	3 cut(s)	79, 202, 382
Psp6I	CCWGG	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	17, 145
PstNI	CAGNNNCTG	1 cut(s)	192
RsaI	GTAC	2 cut(s)	145, 225
RsaNI	GTAC	2 cut(s)	144, 224
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	78, 201, 381
Sau3AI	GATC	5 cut(s)	6, 138, 252, 321, 485
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	6 cut(s)	34, 71, 82, 117, 171, 402
SfaNI	GCATC	3 cut(s)	247, 376, 454
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	2 cut(s)	46, 300
SsiI	CCGC	2 cut(s)	125, 381
SspMI	CTAG	2 cut(s)	482, 498
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	154, 188
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	46, 300
TatI	WGTACW	1 cut(s)	223
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	239, 338
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	2 cut(s)	157, 267
TseI	GCWGC	2 cut(s)	77, 200
TspRI	CASTG	2 cut(s)	157, 267
Vha464I	CTTAAG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	493
XagI	CCTNNNNNAGG	1 cut(s)	27
XceI	RCATGY	1 cut(s)	393
XspI	CTAG	2 cut(s)	482, 498
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.