FvH4_6g16961

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000710
Physical Location & Seq
Reverse (-)
10825511 .. 10826969
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16961.t1

Sequence Viewer

Length: 1281 bp
ATGGACCACTCTAACTGGTGGGTTCAAATAGTGAAGAATAAGTATTTAAAGAACCATTCCTTCTTTGAAACAAAAAAGAAAAGTAGTGACTCCGTTGCTTGGAAAGGCATCCTGGATAGTAGAGATCTCATTACAAAAGGGATGAGATGGACTATTGGCACAGGAAAGGAGGTTAAATTCTGGACTTTTAATTGGATTTTTGATTTTCCTCTTATCAATTTGTTAAATGATCAGCAGAAAGCTACTATTAATTGGGATGCAAATGTGAGTAACTTTATTGCAGGAAATAGCTGGGACAAAGAAAAATTGCTCCAAGTCCTGGATTGGGAAATAGTCAAACAGATAATGGGAATTCCTATCCCCATAAATAACCAGAATGATAGATGTGTCTGGGGACCCGCTGCAAATGATAAGTTCTCCATCAAAACAGCGACTTGGATCCAATACAATGAAACTTTGGATCATCTTTTTGGTGATTGTACAATTGCAACAAATGTTTGGAGAAAAGCTTGCCTCCATGATCTTATTCATGGAAGTGATACATTCTTAAATAAACTGAATCTCTTTTTGAGGAAAAGAAATTACAACAAAAATGATTTTGAGAAAATTCTAACTATTTGTTGGATGATTTGGAAGGCCAGGAACGATGCTTCTTTCAGAAACATTAGTACCTCCCCTCTAACCATTATTAGTGTTGCTGCTTCTATAGAGAAAGGCTTCAAGGAAAATAACATGAATTGCAGGGTTGGTTCTTTCAAAACACCATCAGCCATTAAATGGCAACCACCTCCTGCATCCACTTTCAAAGTAAACTTTGATGGCTCGGTGACTTCCTCTTCTGCAGCCTGTGGTACTATCATCAGGAATTCTGAAGGTGTACCAATTATTACTTCATCAAAGAACATTGGGAAGGCCTCGGTTCCCACAACTGAAGCGACGGCACTAAGAGACAGCATCCTCATTGCCAAGAACAGGGGGCTGACAAGGATCATTGTAGAGGGTGACTCCAAAATCATTATTGATGTAGTGAATGGCAAAATTAGCACCCCATGGAGGCTCCAACAGATTATAGAAGACATTAAAAACTTGGCTCAAGAGTTCCAGGAGATTTGCTTTAACCACATATACAGGGAAGCAAATTTTGCAGCAGACGCCACAGAAAGTTTGGGACATTCAATAACAGGAAGAAGAGACTGGTTCCAACCTTTGCCCAGGTCTATTGGAAGAATGATCCTGTTTGACCAAATTGGTGAAGGCTGCCCACGAGGCAGTGTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

427

Amino Acids

48.39

Weight (kDa)

9.2

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 271 - 385 2.9e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 319, 777
AciI CCGC 1 cut(s) 399
AclWI GGATC 5 cut(s) 433, 446, 468, 995, 1225
AcsI RAATTY 5 cut(s) 176, 351, 606, 865, 1138
AcuI CTGAAG 2 cut(s) 891, 951
AcyI GRCGYC 1 cut(s) 1152
AfaI GTAC 4 cut(s) 481, 670, 853, 879
AfiI CCNNNNNNNGG 6 cut(s) 99, 319, 325, 777, 972, 1053
AgsI TTSAA 6 cut(s) 26, 68, 721, 757, 805, 1176
AjnI CCWGG 5 cut(s) 111, 318, 638, 1101, 1211
AjuI GAANNNNNNNTTGG 2 cut(s) 874, 906
AluBI AGCT 3 cut(s) 242, 291, 509
AluI AGCT 3 cut(s) 242, 291, 509
Alw26I GTCTC 2 cut(s) 942, 1185
AlwI GGATC 5 cut(s) 433, 446, 468, 995, 1225
AoxI GGCC 2 cut(s) 636, 912
ApeKI GCWGC 5 cut(s) 401, 698, 842, 1145, 1257
ApoI RAATTY 5 cut(s) 176, 351, 606, 865, 1138
AseI ATTAAT 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 716
AspS9I GGNCC 2 cut(s) 4, 395
AsuHPI GGTGA 4 cut(s) 485, 838, 1013, 1262
AvaII GGWCC 2 cut(s) 4, 395
BaeI ACNNNNGTAYC 2 cut(s) 652, 685
BamHI GGATCC 1 cut(s) 438
BauI CACGAG 1 cut(s) 1263
BbsI GAAGAC 1 cut(s) 1080
BbvI GCAGC 5 cut(s) 388, 685, 854, 1157, 1244
BccI CCATC 4 cut(s) 141, 428, 772, 812
BceAI ACGGC 1 cut(s) 954
BciT130I CCWGG 5 cut(s) 113, 320, 640, 1103, 1213
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 942, 1185
BfaI CTAG 1 cut(s) 1279
BfmI CTRYAG 2 cut(s) 705, 840
BglI GCCNNNNNGGC 1 cut(s) 1266
BglII AGATCT 1 cut(s) 124
BisI GCNGC 5 cut(s) 402, 699, 843, 1146, 1258
BlsI GCNGC 5 cut(s) 403, 700, 844, 1147, 1259
Bme1390I CCNGG 5 cut(s) 113, 320, 640, 1103, 1213
Bme18I GGWCC 2 cut(s) 4, 395
BmgT120I GGNCC 2 cut(s) 4, 395
BmiI GGNNCC 6 cut(s) 396, 397, 440, 921, 1058, 1199
BmrFI CCNGG 5 cut(s) 113, 320, 640, 1103, 1213
BmsI GCATC 5 cut(s) 117, 247, 637, 803, 963
BpiI GAAGAC 1 cut(s) 1080
BplI GAGNNNNNCTC 2 cut(s) 989, 1021
BpuEI CTTGAG 1 cut(s) 1077
BsaHI GRCGYC 1 cut(s) 1152
BsaJI CCNNGG 3 cut(s) 915, 1049, 1211
Bsc4I CCNNNNNNNGG 6 cut(s) 99, 319, 325, 777, 972, 1053
Bse1I ACTGG 2 cut(s) 20, 1199
Bse3DI GCAATG 1 cut(s) 960
BseBI CCWGG 5 cut(s) 113, 320, 640, 1103, 1213
BseDI CCNNGG 3 cut(s) 915, 1049, 1211
BseGI GGATG 6 cut(s) 108, 147, 262, 630, 794, 954
BseLI CCNNNNNNNGG 6 cut(s) 99, 319, 325, 777, 972, 1053
BseMI GCAATG 1 cut(s) 960
BseNI ACTGG 2 cut(s) 20, 1199
BseXI GCAGC 5 cut(s) 388, 685, 854, 1157, 1244
BseYI CCCAGC 1 cut(s) 291
BshFI GGCC 2 cut(s) 638, 914
BslFI GGGAC 3 cut(s) 308, 408, 1182
BslI CCNNNNNNNGG 6 cut(s) 99, 319, 325, 777, 972, 1053
BsmAI GTCTC 2 cut(s) 942, 1185
BsmFI GGGAC 3 cut(s) 308, 408, 1182
BsnI GGCC 2 cut(s) 638, 914
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 7 cut(s) 124, 229, 438, 460, 520, 987, 1230
Bsp19I CCATGG 1 cut(s) 1049
BspACI CCGC 1 cut(s) 399
BspANI GGCC 2 cut(s) 638, 914
BspLI GGNNCC 6 cut(s) 396, 397, 440, 921, 1058, 1199
BspMAI CTGCAG 1 cut(s) 844
BspPI GGATC 5 cut(s) 433, 446, 468, 995, 1225
BsrDI GCAATG 1 cut(s) 960
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 2 cut(s) 20, 1199
BssECI CCNNGG 3 cut(s) 915, 1049, 1211
BssMI GATC 7 cut(s) 124, 229, 438, 460, 520, 987, 1230
BssNI GRCGYC 1 cut(s) 1152
BssSI CACGAG 1 cut(s) 1263
BssT1I CCWWGG 1 cut(s) 1049
Bst2BI CACGAG 1 cut(s) 1263
Bst2UI CCWGG 5 cut(s) 113, 320, 640, 1103, 1213
Bst6I CTCTTC 2 cut(s) 841, 1183
BstACI GRCGYC 1 cut(s) 1152
BstAPI GCANNNNNTGC 1 cut(s) 1142
BstAUI TGTACA 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 1 cut(s) 944
BstDSI CCRYGG 1 cut(s) 1049
BstF5I GGATG 6 cut(s) 108, 147, 262, 630, 794, 954
BstKTI GATC 7 cut(s) 127, 232, 441, 463, 523, 990, 1233
BstMAI GTCTC 2 cut(s) 942, 1185
BstMBI GATC 7 cut(s) 124, 229, 438, 460, 520, 987, 1230
BstMWI GCNNNNNNNGC 4 cut(s) 1041, 1142, 1151, 1266
BstNI CCWGG 5 cut(s) 113, 320, 640, 1103, 1213
BstSCI CCNGG 5 cut(s) 111, 318, 638, 1101, 1211
BstSFI CTRYAG 2 cut(s) 705, 840
BstV1I GCAGC 5 cut(s) 388, 685, 854, 1157, 1244
BstV2I GAAGAC 1 cut(s) 1080
BstX2I RGATCY 2 cut(s) 124, 438
BstYI RGATCY 2 cut(s) 124, 438
BsuRI GGCC 2 cut(s) 638, 914
BtgI CCRYGG 1 cut(s) 1049
BtsCI GGATG 6 cut(s) 108, 147, 262, 630, 794, 954
BtsI GCAGTG 1 cut(s) 1276
BtsIMutI CAGTG 1 cut(s) 1276
Cac8I GCNNGC 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 4, 395
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 4 cut(s) 480, 669, 852, 878
CviAII CATG 4 cut(s) 518, 530, 733, 1050
CviQI GTAC 4 cut(s) 480, 669, 852, 878
DdeI CTNAG 1 cut(s) 944
DpnI GATC 7 cut(s) 126, 231, 440, 462, 522, 989, 1232
DpnII GATC 7 cut(s) 124, 229, 438, 460, 520, 987, 1230
DraI TTTAAA 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 841, 1183
EarI CTCTTC 2 cut(s) 841, 1183
Eco130I CCWWGG 1 cut(s) 1049
Eco147I AGGCCT 1 cut(s) 914
Eco47I GGWCC 2 cut(s) 4, 395
Eco57I CTGAAG 2 cut(s) 891, 951
EcoO109I RGGNCCY 1 cut(s) 395
EcoRI GAATTC 2 cut(s) 351, 865
EcoRII CCWGG 5 cut(s) 111, 318, 638, 1101, 1211
EcoT14I CCWWGG 1 cut(s) 1049
ErhI CCWWGG 1 cut(s) 1049
FaeI CATG 4 cut(s) 521, 533, 736, 1053
FaiI YATR 9 cut(s) 365, 519, 531, 707, 734, 1051, 1070, 1124, 1126
FaqI GGGAC 3 cut(s) 308, 408, 1182
FatI CATG 4 cut(s) 517, 529, 732, 1049
FauI CCCGC 1 cut(s) 406
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 5 cut(s) 402, 699, 843, 1146, 1258
FokI GGATG 6 cut(s) 95, 154, 269, 637, 781, 941
Fsp4HI GCNGC 5 cut(s) 402, 699, 843, 1146, 1258
FspBI CTAG 1 cut(s) 1279
GluI GCNGC 5 cut(s) 402, 699, 843, 1146, 1258
GsaI CCCAGC 1 cut(s) 295
HaeIII GGCC 2 cut(s) 638, 914
HgaI GACGC 1 cut(s) 1160
Hin1I GRCGYC 1 cut(s) 1152
Hin1II CATG 4 cut(s) 521, 533, 736, 1053
HindIII AAGCTT 1 cut(s) 507
HinfI GANTC 3 cut(s) 89, 559, 1004
HphI GGTGA 4 cut(s) 485, 838, 1013, 1262
Hpy166II GTNNAC 2 cut(s) 811, 878
Hpy188I TCNGA 2 cut(s) 659, 871
Hpy188III TCNNGA 3 cut(s) 181, 862, 1094
Hpy8I GTNNAC 2 cut(s) 811, 878
Hpy99I CGWCG 1 cut(s) 940
HpyAV CCTTC 5 cut(s) 70, 628, 866, 904, 1247
HpyCH4V TGCA 8 cut(s) 260, 281, 404, 488, 741, 794, 842, 1145
HpyF10VI GCNNNNNNNGC 4 cut(s) 1041, 1142, 1151, 1266
HpyF3I CTNAG 1 cut(s) 944
Hsp92I GRCGYC 1 cut(s) 1152
Hsp92II CATG 4 cut(s) 521, 533, 736, 1053
KflI GGGWCCC 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 7 cut(s) 124, 229, 438, 460, 520, 987, 1230
LmnI GCTCC 2 cut(s) 315, 1062
Lsp1109I GCAGC 5 cut(s) 388, 685, 854, 1157, 1244
LweI GCATC 5 cut(s) 117, 247, 637, 803, 963
MaeI CTAG 1 cut(s) 1279
MaeIII GTNAC 4 cut(s) 86, 269, 826, 1001
MalI GATC 7 cut(s) 126, 231, 440, 462, 522, 989, 1232
MboI GATC 7 cut(s) 124, 229, 438, 460, 520, 987, 1230
MboII GAAGA 6 cut(s) 46, 828, 1085, 1197, 1200, 1236
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 2 cut(s) 124, 438
MlyI GAGTC 2 cut(s) 83, 998
MmeI TCCRAC 3 cut(s) 602, 1084, 1225
MroXI GAANNNNTTC 1 cut(s) 716
MseI TTAA 9 cut(s) 47, 174, 189, 224, 249, 548, 774, 1080, 1116
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 401
MspR9I CCNGG 5 cut(s) 113, 320, 640, 1103, 1213
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 5 cut(s) 113, 320, 640, 1103, 1213
MwoI GCNNNNNNNGC 4 cut(s) 1041, 1142, 1151, 1266
NcoI CCATGG 1 cut(s) 1049
NdeII GATC 7 cut(s) 124, 229, 438, 460, 520, 987, 1230
NlaIII CATG 4 cut(s) 521, 533, 736, 1053
NlaIV GGNNCC 6 cut(s) 396, 397, 440, 921, 1058, 1199
NmuCI GTSAC 3 cut(s) 86, 826, 1001
PceI AGGCCT 1 cut(s) 914
PdmI GAANNNNTTC 1 cut(s) 716
PfeI GAWTC 1 cut(s) 559
PflMI CCANNNNNTGG 2 cut(s) 319, 777
PfoI TCCNGGA 3 cut(s) 111, 318, 1101
PkrI GCNGC 5 cut(s) 403, 700, 844, 1147, 1259
PleI GAGTC 2 cut(s) 83, 998
PpsI GAGTC 2 cut(s) 83, 998
PpuMI RGGWCCY 1 cut(s) 395
PshBI ATTAAT 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 5 cut(s) 111, 318, 638, 1101, 1211
PspFI CCCAGC 1 cut(s) 291
PspGI CCWGG 5 cut(s) 111, 318, 638, 1101, 1211
PspN4I GGNNCC 6 cut(s) 396, 397, 440, 921, 1058, 1199
PspPI GGNCC 2 cut(s) 4, 395
PspPPI RGGWCCY 1 cut(s) 395
PstI CTGCAG 1 cut(s) 844
PsuI RGATCY 2 cut(s) 124, 438
RsaI GTAC 4 cut(s) 481, 670, 853, 879
RsaNI GTAC 4 cut(s) 480, 669, 852, 878
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 9 cut(s) 47, 174, 189, 224, 249, 548, 774, 1080, 1116
SatI GCNGC 5 cut(s) 402, 699, 843, 1146, 1258
Sau3AI GATC 7 cut(s) 124, 229, 438, 460, 520, 987, 1230
Sau96I GGNCC 2 cut(s) 4, 395
SchI GAGTC 2 cut(s) 83, 998
ScrFI CCNGG 5 cut(s) 113, 320, 640, 1103, 1213
SetI ASST 9 cut(s) 174, 244, 293, 511, 674, 790, 877, 1207, 1217
SfaNI GCATC 5 cut(s) 117, 247, 637, 803, 963
SfcI CTRYAG 2 cut(s) 705, 840
SinI GGWCC 2 cut(s) 4, 395
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 1092
SmoI CTYRAG 1 cut(s) 1092
SseBI AGGCCT 1 cut(s) 914
SsiI CCGC 1 cut(s) 399
SspMI CTAG 1 cut(s) 1279
StuI AGGCCT 1 cut(s) 914
StyD4I CCNGG 5 cut(s) 111, 318, 638, 1101, 1211
StyI CCWWGG 1 cut(s) 1049
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 9 cut(s) 47, 174, 189, 224, 249, 548, 774, 1080, 1116
Tru9I TTAA 9 cut(s) 47, 174, 189, 224, 249, 548, 774, 1080, 1116
TscAI CASTG 1 cut(s) 1276
TseFI GTSAC 3 cut(s) 86, 826, 1001
TseI GCWGC 5 cut(s) 401, 698, 842, 1145, 1257
Tsp45I GTSAC 3 cut(s) 86, 826, 1001
TspDTI ATGAA 4 cut(s) 465, 518, 749, 882
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 1276
Van91I CCANNNNNTGG 2 cut(s) 319, 777
VpaK11BI GGWCC 2 cut(s) 4, 395
VspI ATTAAT 1 cut(s) 249
XapI RAATTY 5 cut(s) 176, 351, 606, 865, 1138
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XmnI GAANNNNTTC 1 cut(s) 716
XspI CTAG 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.