Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

12122999 .. 12123915

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCAGCCCCATCTCATGACAGAGTCAAAATCAATTTTGATGGCTCAGTTCGAAGTAACTCTGCAGCTGGAGATTTCATTATTAGAATTGAAACCGGCAAATCTCTTGTTGCAGCCTCTTTCAACTCCGGCACCACCACTGTTCCGGTTGCTGAAGCTCTAGCTCTGCTCAATAGCCTCGTGTATGCTAAGGAGCAAGGCTTCTCCAAGATTGAAGTCGAGGGCAACTCTAAGTTGGTGATTGACGCTGTGAATGGAGTCTTGACCCCTCCGTGGAAGTTACTCAAACTAATTCATGATATCAAATTTTTGAGTAATTCCTCTGAGTTTGTATGCTTTCAGCATGTGTTTAGGGAAACAAATTTTGTGGCTAATGTTTTAGCCAATCTTGGACATATGTTGAGTAACTTACACTGCTGGGAGGAGTGTATTCCCTCGGAAACGTCTTCTGTTCTTGCCTTTGACATTGTAAACCTTGGGTGCATTGGAGGCACCTCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.0

Weight (kDa)

5.68

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	12 - 130	8.5e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 491
AcsI	RAATTY	2 cut(s)	305, 361
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	92, 124, 215
AluBI	AGCT	3 cut(s)	68, 158, 164
AluI	AGCT	3 cut(s)	68, 158, 164
ApeKI	GCWGC	3 cut(s)	5, 65, 113
ApoI	RAATTY	2 cut(s)	305, 361
AsuHPI	GGTGA	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	52
BanI	GGYRCC	2 cut(s)	131, 491
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	17, 77, 125
BccI	CCATC	2 cut(s)	19, 35
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	3 cut(s)	6, 66, 114
BlsI	GCNGC	3 cut(s)	7, 67, 115
BmiI	GGNNCC	2 cut(s)	133, 493
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	52
BsaJI	CCNNGG	3 cut(s)	272, 435, 475
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	95
BseDI	CCNNGG	3 cut(s)	272, 435, 475
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	60, 315
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	17, 77, 125
BseYI	CCCAGC	1 cut(s)	417
BshNI	GGYRCC	2 cut(s)	131, 491
BsiSI	CCGG	3 cut(s)	96, 129, 146
BslI	CCNNNNNNNGG	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	52
BspCNI	CTCAG	2 cut(s)	59, 316
BspHI	TCATGA	2 cut(s)	16, 295
BspLI	GGNNCC	2 cut(s)	133, 493
BspMAI	CTGCAG	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	52
BspT107I	GGYRCC	2 cut(s)	131, 491
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	272, 435, 475
BssSI	CACGAG	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	475
Bst2BI	CACGAG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	52
BstDEI	CTNAG	4 cut(s)	46, 189, 231, 324
BstDSI	CCRYGG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	17, 77, 125
BstV2I	GAAGAC	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	272
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	138, 412
CciI	TCATGA	2 cut(s)	16, 295
Cfr10I	RCCGGY	1 cut(s)	95
CseI	GACGC	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	3 cut(s)	17, 296, 344
DdeI	CTNAG	4 cut(s)	46, 189, 231, 324
Eco130I	CCWWGG	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	3 cut(s)	20, 299, 347
FaiI	YATR	7 cut(s)	18, 186, 297, 334, 345, 396, 398
FatI	CATG	3 cut(s)	16, 295, 343
FauNDI	CATATG	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	6, 66, 114
Fsp4HI	GCNGC	3 cut(s)	6, 66, 114
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	3 cut(s)	6, 66, 114
GsaI	CCCAGC	1 cut(s)	421
GsuI	CTGGAG	1 cut(s)	90
HapII	CCGG	3 cut(s)	96, 129, 146
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	20, 299, 347
HinfI	GANTC	2 cut(s)	24, 258
HpaII	CCGG	3 cut(s)	96, 129, 146
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	325, 439
Hpy188III	TCNNGA	3 cut(s)	17, 262, 296
Hpy8I	GTNNAC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	3 cut(s)	65, 113, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	4 cut(s)	46, 189, 231, 324
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	20, 299, 347
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	5 cut(s)	54, 109, 142, 159, 403
Lsp1109I	GCAGC	3 cut(s)	17, 77, 125
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	3 cut(s)	56, 279, 404
MboII	GAAGA	1 cut(s)	438
MluCI	AATT	6 cut(s)	34, 87, 291, 305, 316, 361
MlyI	GAGTC	2 cut(s)	33, 267
MnlI	CCTC	8 cut(s)	127, 188, 214, 279, 331, 415, 445, 482
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	3 cut(s)	96, 129, 146
MwoI	GCNNNNNNNGC	1 cut(s)	489
NdeI	CATATG	1 cut(s)	396
NlaIII	CATG	3 cut(s)	20, 299, 347
NlaIV	GGNNCC	2 cut(s)	133, 493
NspI	RCATGY	1 cut(s)	347
NspV	TTCGAA	1 cut(s)	52
PagI	TCATGA	2 cut(s)	16, 295
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	7, 67, 115
PleI	GAGTC	2 cut(s)	32, 266
PpsI	GAGTC	2 cut(s)	32, 266
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	133, 493
PstI	CTGCAG	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	68
SatI	GCNGC	3 cut(s)	6, 66, 114
SchI	GAGTC	2 cut(s)	33, 267
SetI	ASST	6 cut(s)	70, 160, 166, 446, 477, 497
SfcI	CTRYAG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	52
Sse9I	AATT	6 cut(s)	34, 87, 291, 305, 316, 361
SspMI	CTAG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	2 cut(s)	52, 219
TasI	AATT	6 cut(s)	34, 87, 291, 305, 316, 361
TscAI	CASTG	2 cut(s)	145, 419
TseI	GCWGC	3 cut(s)	5, 65, 113
TspDTI	ATGAA	2 cut(s)	67, 284
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	145, 419
Tth111I	GACNNNGTC	1 cut(s)	23
XapI	RAATTY	2 cut(s)	305, 361
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.