Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

18617790 .. 18619396

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACGGGAAAGAGATCAGGAGGGAGGTTTGATTGCGAGGGAGAAAAGAAGAACAAAGAAAGAGATGCTGGTGCAGTAACCCTCACGCCTCGATTGAAGGAACAAGAGAATACATGGAGGGACATGCGCGCAGCAGCTTCAATGTCTTCAAGCTGTGTTAATCTTGATACAAGTTCTAGTGATGTGCACTTTCAAAACCCGAATGCTGCTATTAAGTGGCAAGCACTTCCTAGTTCATTTGTCAAGATTAACTTTGATGATTCAGTTATGGGAGATTATGCGGCAATGGGCTTTGTCATCCGAGATGTTCATGGCAGACCTACTTCTGCAGCATCCAATCATGTTGGAAGAGCCTCAGTGCCTGTTGTAGAGGCATTGGCTCTAAGAGACAACCTAGTGAAAACAAACAAGAAAGGCTTACAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

143

Amino Acids

15.48

Weight (kDa)

9.43

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	97, 141, 150, 194
AluBI	AGCT	2 cut(s)	137, 153
AluI	AGCT	2 cut(s)	137, 153
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	381
Alw44I	GTGCAC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	362
ApaLI	GTGCAC	1 cut(s)	185
ApeKI	GCWGC	4 cut(s)	131, 134, 206, 329
AspLEI	GCGC	2 cut(s)	129, 131
BaeGI	GKGCMC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	143, 146, 193, 341
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	3 cut(s)	177, 231, 395
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	5 cut(s)	132, 135, 207, 282, 330
BlsI	GCNGC	5 cut(s)	133, 136, 208, 283, 331
BmsI	GCATC	2 cut(s)	55, 341
BpiI	GAAGAC	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	297, 332
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	369
BsePI	GCGCGC	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	143, 146, 193, 341
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	291
BssHII	GCGCGC	1 cut(s)	127
BssMI	GATC	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	129, 222
BstDEI	CTNAG	2 cut(s)	355, 383
BstF5I	GGATG	2 cut(s)	297, 332
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	129, 131
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	189
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	143, 146, 193, 341
BstV2I	GAAGAC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	297, 332
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	129, 222
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	2 cut(s)	129, 131
CviAII	CATG	4 cut(s)	114, 124, 311, 341
CviJI	RGCY	6 cut(s)	137, 153, 291, 353, 380, 417
CviKI_1	RGCY	6 cut(s)	137, 153, 291, 353, 380, 417
DdeI	CTNAG	2 cut(s)	355, 383
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
FaeI	CATG	4 cut(s)	117, 127, 314, 344
FaiI	YATR	6 cut(s)	115, 125, 269, 279, 312, 342
FalI	AAGNNNNNCTT	3 cut(s)	236, 268, 401
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	4 cut(s)	113, 123, 310, 340
Fnu4HI	GCNGC	5 cut(s)	132, 135, 207, 282, 330
FokI	GGATG	2 cut(s)	284, 319
Fsp4HI	GCNGC	5 cut(s)	132, 135, 207, 282, 330
FspBI	CTAG	3 cut(s)	177, 231, 395
GlaI	GCGC	2 cut(s)	128, 130
GluI	GCNGC	5 cut(s)	132, 135, 207, 282, 330
HhaI	GCGC	2 cut(s)	129, 131
Hin1II	CATG	4 cut(s)	117, 127, 314, 344
Hin6I	GCGC	2 cut(s)	127, 129
HinP1I	GCGC	2 cut(s)	127, 129
HinfI	GANTC	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	3 cut(s)	18, 164, 244
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	74, 187, 329
HpyF3I	CTNAG	2 cut(s)	355, 383
Hsp92II	CATG	4 cut(s)	117, 127, 314, 344
HspAI	GCGC	2 cut(s)	127, 129
Kzo9I	GATC	1 cut(s)	14
LguI	GCTCTTC	1 cut(s)	343
LpnPI	CCDG	3 cut(s)	3, 54, 375
Lsp1109I	GCAGC	4 cut(s)	143, 146, 193, 341
LweI	GCATC	2 cut(s)	55, 341
MaeI	CTAG	3 cut(s)	177, 231, 395
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	3 cut(s)	61, 138, 360
MhlI	GDGCHC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	8 cut(s)	14, 18, 31, 92, 99, 111, 364, 364
MseI	TTAA	3 cut(s)	159, 213, 249
Mva1269I	GAATGC	1 cut(s)	208
MvnI	CGCG	1 cut(s)	129
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	4 cut(s)	117, 127, 314, 344
NspI	RCATGY	1 cut(s)	127
PauI	GCGCGC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	343
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	5 cut(s)	133, 136, 208, 283, 331
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	362
PteI	GCGCGC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	159, 213, 249
SatI	GCNGC	5 cut(s)	132, 135, 207, 282, 330
Sau3AI	GATC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	5 cut(s)	29, 139, 155, 322, 396
SfaNI	GCATC	2 cut(s)	55, 341
SfcI	CTRYAG	1 cut(s)	327
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	3 cut(s)	177, 231, 395
TaqI	TCGA	1 cut(s)	91
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	159, 213, 249
Tru9I	TTAA	3 cut(s)	159, 213, 249
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	4 cut(s)	131, 134, 206, 329
TspDTI	ATGAA	2 cut(s)	225, 299
TspRI	CASTG	1 cut(s)	363
VneI	GTGCAC	1 cut(s)	185
XceI	RCATGY	1 cut(s)	127
XspI	CTAG	3 cut(s)	177, 231, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.