pycom03g10270

beta-mannosidase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
9412614 .. 9413055
442 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g10270.1

Sequence Viewer

Length: 399 bp
ATGAAGATAATTAGCTGGAATGTTAGAGGATTGGGAAGTAGGCAGAAGAGGTTGATTTTGAAACAGCAATTCAGGCGATTAAAGCCCGATATCATTATCTTACAAGAAACAAAGAAAGAATCAATTAACAGATCGCTTGTGGCTAGTGTTTGGGAAAGCAGATTTAAAGAGTGGATTTACGCCCCTGCTCAAGGAAGATCTGAGGGTATAGTTGTGATTTGGAACACCAAACACATCTCAGTTATTGAATCTTTGGTTGGAGGTTTCTCTGTCTCCATAAAAATTAAAGCCCTCAATGGGTTGGACTGGTGGTTATCTGGTGTCTATGGTCCCTGCAAAAATAGAGAGCGAAAGGAGTTTTGGGAAGAAATGGCTGGCCTTTACGGTCTTTATTTGTAA

Protein Analysis

133

Amino Acids

15.37

Weight (kDa)

10.0

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 76 1.1e-07 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 191, 297
AgsI TTSAA 2 cut(s) 61, 248
AjuI GAANNNNNNNTTGG 4 cut(s) 240, 272, 343, 375
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 329
AvaII GGWCC 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 144
BglII AGATCT 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 297
Bse1I ACTGG 1 cut(s) 311
BseLI CCNNNNNNNGG 2 cut(s) 191, 297
BseMII CTCAG 2 cut(s) 192, 252
BseNI ACTGG 1 cut(s) 311
BshFI GGCC 1 cut(s) 378
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 191, 297
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 131, 197
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 193, 251
BspLI GGNNCC 1 cut(s) 331
BsrI ACTGG 1 cut(s) 311
BssMI GATC 2 cut(s) 131, 197
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 201, 238
BstENI CCTNNNNNAGG 1 cut(s) 189
BstKTI GATC 2 cut(s) 134, 200
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 2 cut(s) 131, 197
BstMWI GCNNNNNNNGC 2 cut(s) 73, 82
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 329
CviJI RGCY 6 cut(s) 15, 85, 143, 290, 374, 378
CviKI_1 RGCY 6 cut(s) 15, 85, 143, 290, 374, 378
DdeI CTNAG 2 cut(s) 201, 238
DpnI GATC 2 cut(s) 133, 199
DpnII GATC 2 cut(s) 131, 197
DraI TTTAAA 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 329
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoRV GATATC 1 cut(s) 91
FaiI YATR 3 cut(s) 209, 278, 327
FaqI GGGAC 1 cut(s) 315
FspBI CTAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 378
HinfI GANTC 2 cut(s) 119, 248
Hpy188I TCNGA 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 82
HpyF3I CTNAG 2 cut(s) 201, 238
Kzo9I GATC 2 cut(s) 131, 197
LpnPI CCDG 6 cut(s) 58, 198, 292, 303, 346, 360
MaeI CTAG 1 cut(s) 144
MalI GATC 2 cut(s) 133, 199
MboI GATC 2 cut(s) 131, 197
MboII GAAGA 4 cut(s) 16, 58, 207, 377
MflI RGATCY 1 cut(s) 197
MluCI AATT 4 cut(s) 9, 68, 123, 282
MmeI TCCRAC 2 cut(s) 238, 282
MnlI CCTC 5 cut(s) 20, 42, 196, 254, 302
MseI TTAA 4 cut(s) 80, 126, 165, 285
MwoI GCNNNNNNNGC 2 cut(s) 73, 82
NdeII GATC 2 cut(s) 131, 197
NlaIV GGNNCC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 119, 248
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 1 cut(s) 197
SaqAI TTAA 4 cut(s) 80, 126, 165, 285
Sau3AI GATC 2 cut(s) 131, 197
Sau96I GGNCC 1 cut(s) 329
SetI ASST 3 cut(s) 17, 53, 265
SinI GGWCC 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 4 cut(s) 9, 68, 123, 282
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 386
TasI AATT 4 cut(s) 9, 68, 123, 282
TfiI GAWTC 2 cut(s) 119, 248
Tru1I TTAA 4 cut(s) 80, 126, 165, 285
Tru9I TTAA 4 cut(s) 80, 126, 165, 285
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 329
XagI CCTNNNNNAGG 1 cut(s) 189
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.