Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

10911322 .. 10912758

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18562.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAACGTGGACAAATGAGAAATGCAGAGGCAAAAGCAAAAGGAGAAGGCGATGGAAACGTGATTCTGGTTGCTGCAAAGGGATTAGGAAGTACTATTATCCCAACAGCTGAAGCCACGACTCTTAGAGATAGTCTTGTCAAAGCTAGAGACCGAGGCTACATGAATATCCACATAGAAGGCAACTCGAAGCTTGTGATTGATGCCATCAATGAGAAATTATCCCCTCCATGGAGACTGCGGAAAATTGTCCAAGATATTCGGACTATTGCTACCTCAGTCTCCTCAATTTGCTTTAACAATGTATACAGAGAGGCAAACTGTGTGACAAATGCTATTACAAATGAAGGCCACCAACTCTCCCCAACGGTCATGTGTGGCAAGATGGATACCCAGCAGCTGCTTCTAGAACGTTGTTATTTGATATTGTTAACTCAGGCTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

149

Amino Acids

16.29

Weight (kDa)

8.75

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	18 - 115	1.9e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	1 cut(s)	241
AclI	AACGTT	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	231
AluBI	AGCT	4 cut(s)	110, 146, 193, 400
AluI	AGCT	4 cut(s)	110, 146, 193, 400
Alw26I	GTCTC	3 cut(s)	144, 229, 286
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	74, 397, 400
BbvI	GCAGC	3 cut(s)	61, 387, 409
BccI	CCATC	3 cut(s)	47, 215, 379
BciVI	GTATCC	1 cut(s)	382
BcoDI	GTCTC	3 cut(s)	144, 229, 286
BfaI	CTAG	2 cut(s)	147, 407
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	3 cut(s)	75, 398, 401
BlsI	GCNGC	3 cut(s)	76, 399, 402
BmcAI	AGTACT	1 cut(s)	94
BmsI	GCATC	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	154, 230
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	154, 230
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	61, 387, 409
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	3 cut(s)	144, 229, 286
BsnI	GGCC	1 cut(s)	351
Bso31I	GGTCTC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	154, 230
BssNAI	GTATAC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	230
Bst1107I	GTATAC	1 cut(s)	307
Bst4CI	ACNGT	2 cut(s)	323, 370
BstDEI	CTNAG	3 cut(s)	125, 277, 435
BstDSI	CCRYGG	1 cut(s)	230
BstMAI	GTCTC	3 cut(s)	144, 229, 286
BstV1I	GCAGC	3 cut(s)	61, 387, 409
BstZ17I	GTATAC	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	3 cut(s)	163, 231, 373
CviJI	RGCY	8 cut(s)	110, 116, 146, 159, 193, 351, 400, 440
CviKI_1	RGCY	8 cut(s)	110, 116, 146, 159, 193, 351, 400, 440
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	3 cut(s)	125, 277, 435
Eco130I	CCWWGG	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	3 cut(s)	166, 234, 376
FaiI	YATR	5 cut(s)	164, 176, 232, 307, 374
FatI	CATG	3 cut(s)	162, 230, 372
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	75, 398, 401
Fsp4HI	GCNGC	3 cut(s)	75, 398, 401
FspBI	CTAG	2 cut(s)	147, 407
GluI	GCNGC	3 cut(s)	75, 398, 401
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	166, 234, 376
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	64, 121
HpaI	GTTAAC	1 cut(s)	432
Hpy166II	GTNNAC	3 cut(s)	11, 307, 432
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	3 cut(s)	11, 307, 432
HpyAV	CCTTC	3 cut(s)	41, 173, 341
HpyCH4III	ACNGT	2 cut(s)	323, 370
HpyCH4IV	ACGT	3 cut(s)	7, 60, 412
HpyCH4V	TGCA	2 cut(s)	26, 77
HpyF3I	CTNAG	3 cut(s)	125, 277, 435
HpySE526I	ACGT	3 cut(s)	7, 60, 412
Hsp92II	CATG	3 cut(s)	166, 234, 376
KspAI	GTTAAC	1 cut(s)	432
LpnPI	CCDG	3 cut(s)	53, 407, 422
Lsp1109I	GCAGC	3 cut(s)	61, 387, 409
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	147, 407
MaeII	ACGT	3 cut(s)	7, 60, 412
MaeIII	GTNAC	1 cut(s)	325
MluCI	AATT	3 cut(s)	218, 246, 288
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	6 cut(s)	22, 149, 237, 286, 295, 307
MseI	TTAA	2 cut(s)	297, 431
MspA1I	CMGCKG	2 cut(s)	110, 400
NcoI	CCATGG	1 cut(s)	230
NlaIII	CATG	3 cut(s)	166, 234, 376
NmuCI	GTSAC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	76, 399, 402
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp1406I	AACGTT	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	393
PstNI	CAGNNNCTG	1 cut(s)	400
PvuII	CAGCTG	2 cut(s)	110, 400
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	297, 431
SatI	GCNGC	3 cut(s)	75, 398, 401
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	115
SetI	ASST	8 cut(s)	10, 63, 112, 148, 195, 278, 402, 415
SfaNI	GCATC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	218, 246, 288
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	2 cut(s)	147, 407
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	323, 370
TaiI	ACGT	3 cut(s)	10, 63, 415
TaqI	TCGA	1 cut(s)	188
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	3 cut(s)	218, 246, 288
TatI	WGTACW	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	297, 431
Tru9I	TTAA	2 cut(s)	297, 431
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	74, 397, 400
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	179, 360
XbaI	TCTAGA	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	2 cut(s)	147, 407
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.