Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

8902181 .. 8906421

Gene Structure 4241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCGCCGGAAGGAGGAGGAACGTCTTCTTCTGAAGGAGGAGGAGGTTCGTGGCCAGGCTGCGGCTAGAGGTTTTGTTTTAAGATCTGATGATGGAAAACCTCTTGTTTCTGCTGCCTTCAACTCTGGTAATGCCAGTGTTCCTCTTGCTGAAGCGTTGGCACTTAGAAACAGCTTATTTTGCGCTAAGGAGAAAGGTGTGTTGAAGGTCGAAATGGAGGGCGATTCAAAACTCATTATTGACATTGTGAATGGAGTTTGTGATCCCCCTTGGAGGCTTCTGAAGGTTGTTCAAGACATCAAGTTGCTAAGTTGTAACTTTGAGTCCATTAGGTTCAAGCATGTTTTTAAGGAGGCCAATTTTGTGGCCAATGCTTTGGCAAATCTAGGGCATAGAGTTGAGTTTAGTAGGCTTTGGGTGGAGTGTGTTCCCCCAGAAGCCTCACTCGCTCTTGCGTTTGATTCTGTAAACTCTGGGTGTCGTCGAGGCACCTCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.36

Weight (kDa)

8.3

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	19 - 129	5.6e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	488
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	2 cut(s)	52, 366
AcuI	CTGAAG	3 cut(s)	53, 171, 302
AfiI	CCNNNNNNNGG	3 cut(s)	13, 61, 273
AgsI	TTSAA	5 cut(s)	121, 205, 228, 293, 337
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	3 cut(s)	52, 354, 366
ApeKI	GCWGC	2 cut(s)	59, 113
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	6, 185
BalI	TGGCCA	2 cut(s)	54, 368
BanI	GGYRCC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	46, 100
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	56
BfaI	CTAG	2 cut(s)	66, 386
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	3 cut(s)	60, 63, 114
BlsI	GCNGC	3 cut(s)	61, 64, 115
Bme1390I	CCNGG	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 61, 273
Bse1I	ACTGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	269
BseLI	CCNNNNNNNGG	3 cut(s)	13, 61, 273
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	3 cut(s)	29, 53, 56
BseXI	GCAGC	2 cut(s)	46, 100
BshFI	GGCC	3 cut(s)	54, 356, 368
BshNI	GGYRCC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	3 cut(s)	13, 61, 273
BsnI	GGCC	3 cut(s)	54, 356, 368
Bsp143I	GATC	2 cut(s)	83, 262
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	3 cut(s)	54, 356, 368
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	83, 262
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	164, 186, 308
BstHHI	GCGC	2 cut(s)	6, 185
BstKTI	GATC	2 cut(s)	86, 265
BstMBI	GATC	2 cut(s)	83, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 446
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	46, 100
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	2 cut(s)	364, 376
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	54, 356, 368
BtsIMutI	CAGTG	1 cut(s)	142
CfoI	GCGC	2 cut(s)	6, 185
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	9 cut(s)	54, 59, 65, 174, 277, 356, 368, 412, 440
CviKI_1	RGCY	9 cut(s)	54, 59, 65, 174, 277, 356, 368, 412, 440
DdeI	CTNAG	3 cut(s)	164, 186, 308
DpnI	GATC	2 cut(s)	85, 264
DpnII	GATC	2 cut(s)	83, 262
EaeI	YGGCCR	2 cut(s)	52, 366
Eco130I	CCWWGG	1 cut(s)	269
Eco57I	CTGAAG	3 cut(s)	53, 171, 302
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	1 cut(s)	344
FaiI	YATR	2 cut(s)	342, 393
FatI	CATG	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	60, 63, 114
Fsp4HI	GCNGC	3 cut(s)	60, 63, 114
FspBI	CTAG	2 cut(s)	66, 386
GlaI	GCGC	2 cut(s)	5, 184
GluI	GCNGC	3 cut(s)	60, 63, 114
HaeIII	GGCC	3 cut(s)	54, 356, 368
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	2 cut(s)	6, 185
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	2 cut(s)	4, 183
HinP1I	GCGC	2 cut(s)	4, 183
HinfI	GANTC	3 cut(s)	224, 323, 461
HpaII	CCGG	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	3 cut(s)	33, 88, 282
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	469
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	5 cut(s)	4, 28, 127, 199, 277
HpyCH4IV	ACGT	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 446
HpyF3I	CTNAG	3 cut(s)	164, 186, 308
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	2 cut(s)	4, 183
Kzo9I	GATC	2 cut(s)	83, 262
LpnPI	CCDG	7 cut(s)	20, 41, 68, 111, 148, 447, 459
Lsp1109I	GCAGC	2 cut(s)	46, 100
MaeI	CTAG	2 cut(s)	66, 386
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	85, 264
MboI	GATC	2 cut(s)	83, 262
MboII	GAAGA	2 cut(s)	17, 20
MflI	RGATCY	1 cut(s)	83
MlsI	TGGCCA	2 cut(s)	54, 368
MluCI	AATT	1 cut(s)	358
MluNI	TGGCCA	2 cut(s)	54, 368
MlyI	GAGTC	1 cut(s)	332
Mox20I	TGGCCA	2 cut(s)	54, 368
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	2 cut(s)	54, 368
MseI	TTAA	3 cut(s)	80, 348, 499
Msp20I	TGGCCA	2 cut(s)	54, 368
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	180, 446
NdeII	GATC	2 cut(s)	83, 262
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	490
NspI	RCATGY	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	224, 461
PkrI	GCNGC	3 cut(s)	61, 64, 115
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	80, 348, 499
SatI	GCNGC	3 cut(s)	60, 63, 114
Sau3AI	GATC	2 cut(s)	83, 262
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	66, 386
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	269
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	210, 484
TasI	AATT	1 cut(s)	358
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	224, 461
Tru1I	TTAA	3 cut(s)	80, 348, 499
Tru9I	TTAA	3 cut(s)	80, 348, 499
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	2 cut(s)	59, 113
TspRI	CASTG	1 cut(s)	142
XceI	RCATGY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	2 cut(s)	66, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.