Rmu_sc0002248.1_g000001

Reverse transcriptase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002248.1
Physical Location & Seq
Reverse (-)
779 .. 1207
429 bp
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UTR
Exon/CDS
Intron
Rmu_sc0002248.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
atggctcagtccatcgagattcgactgctgggggctacatcattagaaaccatgtgggtaagcctttctacgcagcctctatccctactggaaatgcttcagttcctgttgctgaggcgactgcactctggaatagcctcattcatgctagagagaaaggtattcaaaattaaggtggagattgaaggcgaccccaaacttgttattgatgcgattaatggagttattagtccaccggggaggctgattaaaattgtccaaaacattagaaggattgctgccaatttcagttccattgctttcaaacatgttctaagggaagctaattttgtcgctgacgctctagccaatttaggtcaagttaccaatttgtattccatctggaatgacagagttccacctcaggcagcacaagccttattgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

15.85

Weight (kDa)

9.86

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 3 cut(s) 166, 185, 304
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 73, 278, 407
AseI ATTAAT 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 237
AxyI CCTNAGG 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 85, 265, 419
BccI CCATC 2 cut(s) 20, 386
BcnI CCSGG 1 cut(s) 237
BfaI CTAG 2 cut(s) 149, 344
BisI GCNGC 3 cut(s) 74, 279, 408
BlsI GCNGC 3 cut(s) 75, 280, 409
Bme1390I CCNGG 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 93
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 3 cut(s) 20, 104, 416
BseNI ACTGG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 85, 265, 419
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 107
BsiSI CCGG 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 19, 105, 415
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 236
BstDEI CTNAG 4 cut(s) 6, 113, 314, 402
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 85, 265, 419
Bsu36I CCTNAGG 1 cut(s) 402
CaiI CAGNNNCTG 1 cut(s) 106
CseI GACGC 1 cut(s) 347
CviAII CATG 3 cut(s) 52, 145, 308
CviJI RGCY 9 cut(s) 5, 35, 63, 76, 137, 244, 323, 347, 416
CviKI_1 RGCY 9 cut(s) 5, 35, 63, 76, 137, 244, 323, 347, 416
DdeI CTNAG 4 cut(s) 6, 113, 314, 402
Eco57I CTGAAG 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 402
FaeI CATG 3 cut(s) 55, 148, 311
FaiI YATR 3 cut(s) 53, 146, 309
FatI CATG 3 cut(s) 51, 144, 307
Fnu4HI GCNGC 3 cut(s) 74, 279, 408
Fsp4HI GCNGC 3 cut(s) 74, 279, 408
FspBI CTAG 2 cut(s) 149, 344
GluI GCNGC 3 cut(s) 74, 279, 408
GsaI CCCAGC 1 cut(s) 32
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 347
Hin1II CATG 3 cut(s) 55, 148, 311
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 233
Hpy188III TCNNGA 3 cut(s) 16, 129, 382
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 179, 264
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 4 cut(s) 6, 113, 314, 402
Hsp92II CATG 3 cut(s) 55, 148, 311
LpnPI CCDG 7 cut(s) 14, 74, 114, 119, 249, 367, 389
Lsp1109I GCAGC 3 cut(s) 85, 265, 419
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 149, 344
MaeIII GTNAC 1 cut(s) 361
MluCI AATT 6 cut(s) 168, 252, 283, 325, 349, 367
MnlI CCTC 5 cut(s) 87, 108, 148, 234, 411
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 3 cut(s) 171, 216, 249
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 413
NciI CCSGG 1 cut(s) 237
NlaIII CATG 3 cut(s) 55, 148, 311
NspI RCATGY 1 cut(s) 311
PciI ACATGT 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 75, 280, 409
PscI ACATGT 1 cut(s) 307
PshBI ATTAAT 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 106
SaqAI TTAA 3 cut(s) 171, 216, 249
SatI GCNGC 3 cut(s) 74, 279, 408
ScrFI CCNGG 1 cut(s) 237
SetI ASST 5 cut(s) 162, 177, 325, 358, 403
SfaNI GCATC 1 cut(s) 199
Sse9I AATT 6 cut(s) 168, 252, 283, 325, 349, 367
SspMI CTAG 2 cut(s) 149, 344
StyD4I CCNGG 1 cut(s) 235
TaqI TCGA 2 cut(s) 15, 22
TasI AATT 6 cut(s) 168, 252, 283, 325, 349, 367
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 3 cut(s) 171, 216, 249
Tru9I TTAA 3 cut(s) 171, 216, 249
TseI GCWGC 3 cut(s) 73, 278, 407
TspDTI ATGAA 1 cut(s) 133
VspI ATTAAT 1 cut(s) 216
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 2 cut(s) 149, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.