Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001651.1

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

85225 .. 86097

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001651.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgataaaggataattcttgttccctttgtcatgaagataatgaaacggctaaacatctctttggctactgtaagtttgctacagaagtctggacccttgctggcattgactacccaattaattgggaagagggctaccttaagggtaggaatgatgccattttcaggggtgttacccctaacccgagatctaccactgcgattgttgctgctaccctgcagaataatgcctttcacctagatatctctagagccactaaacatgttgagaagacttctattctggttgctaaggccactgcccttcgcaatagtctattgtatacttggaagaaaggttaccgacgtttagaagtggaaggcgactcaaagcttataatcgatgttgtccgaggtacaattaacccaccttggagattggtcacgctcatcagggatatcagaaagcttgctaattgcttccaatcaatttcttttaaacatgttttccaagaggcaaactttgtagctgatgctgcaatagcaaatctaggtcatacttgtactcatgaggcttcttggagggatagagtacgtcgtgaggcctctaagggcaactccaatcatgggcaccatttgggggtgctaatctcattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.93

Weight (kDa)

9.26

Isoelectric Point (pI)

21.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	323
AfaI	GTAC	3 cut(s)	397, 544, 573
AfiI	CCNNNNNNNGG	3 cut(s)	165, 606, 619
AflII	CTTAAG	1 cut(s)	140
AflIII	ACRYGT	2 cut(s)	262, 481
AluBI	AGCT	3 cut(s)	373, 448, 509
AluI	AGCT	3 cut(s)	373, 448, 509
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	294, 582
ApeKI	GCWGC	2 cut(s)	209, 515
AseI	ATTAAT	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	609
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	196, 502
BceAI	ACGGC	1 cut(s)	63
BfaI	CTAG	3 cut(s)	239, 249, 530
BfmI	CTRYAG	2 cut(s)	81, 218
BfrI	CTTAAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	2 cut(s)	210, 516
BlsI	GCNGC	2 cut(s)	211, 517
Bme18I	GGWCC	1 cut(s)	93
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	95, 611
BmsI	GCATC	2 cut(s)	145, 502
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	391, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 606, 619
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	391, 410
BseLI	CCNNNNNNNGG	3 cut(s)	165, 606, 619
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	2 cut(s)	196, 502
BshFI	GGCC	2 cut(s)	296, 584
BshNI	GGYRCC	1 cut(s)	609
BshVI	ATCGAT	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	165, 606, 619
BsnI	GGCC	2 cut(s)	296, 584
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	296, 584
BspDI	ATCGAT	1 cut(s)	381
BspHI	TCATGA	2 cut(s)	31, 547
BspLI	GGNNCC	2 cut(s)	95, 611
BspMAI	CTGCAG	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	609
BspTI	CTTAAG	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	391, 410
BssMI	GATC	1 cut(s)	188
BssNAI	GTATAC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	410
Bst1107I	GTATAC	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	123
BstAFI	CTTAAG	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	103, 450
BstDEI	CTNAG	2 cut(s)	291, 588
BstEII	GGTNACC	1 cut(s)	338
BstKTI	GATC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 515, 521
BstNSI	RCATGY	2 cut(s)	266, 485
BstPI	GGTNACC	1 cut(s)	338
BstSFI	CTRYAG	2 cut(s)	81, 218
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	2 cut(s)	196, 502
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	188
BstZ17I	GTATAC	1 cut(s)	324
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	296, 584
BsuTUI	ATCGAT	1 cut(s)	381
BtsI	GCAGTG	2 cut(s)	195, 297
BtsIMutI	CAGTG	2 cut(s)	195, 297
Cac8I	GCNNGC	2 cut(s)	103, 450
CciI	TCATGA	2 cut(s)	31, 547
Cfr13I	GGNCC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	396, 543, 572
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	5 cut(s)	32, 263, 482, 548, 605
CviQI	GTAC	3 cut(s)	396, 543, 572
DdeI	CTNAG	2 cut(s)	291, 588
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
DraI	TTTAAA	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	584
Eco32I	GATATC	2 cut(s)	244, 439
Eco47I	GGWCC	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoRV	GATATC	2 cut(s)	244, 439
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	5 cut(s)	35, 266, 485, 551, 608
FaiI	YATR	8 cut(s)	33, 264, 324, 377, 483, 537, 549, 606
FatI	CATG	5 cut(s)	31, 262, 481, 547, 604
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	210, 516
Fsp4HI	GCNGC	2 cut(s)	210, 516
FspBI	CTAG	3 cut(s)	239, 249, 530
GluI	GCNGC	2 cut(s)	210, 516
HaeIII	GGCC	2 cut(s)	296, 584
Hin1II	CATG	5 cut(s)	35, 266, 485, 551, 608
HindIII	AAGCTT	2 cut(s)	371, 446
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	2 cut(s)	392, 443
Hpy188III	TCNNGA	5 cut(s)	32, 91, 249, 548, 578
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	2 cut(s)	348, 579
HpyAV	CCTTC	2 cut(s)	314, 353
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	2 cut(s)	346, 574
HpyCH4V	TGCA	2 cut(s)	220, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 515, 521
HpyF3I	CTNAG	2 cut(s)	291, 588
HpySE526I	ACGT	2 cut(s)	346, 574
Hsp92II	CATG	5 cut(s)	35, 266, 485, 551, 608
Kzo9I	GATC	1 cut(s)	188
LpnPI	CCDG	6 cut(s)	76, 87, 151, 230, 269, 418
Lsp1109I	GCAGC	2 cut(s)	196, 502
LweI	GCATC	2 cut(s)	145, 502
MaeI	CTAG	3 cut(s)	239, 249, 530
MaeII	ACGT	2 cut(s)	346, 574
MaeIII	GTNAC	3 cut(s)	172, 338, 421
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	4 cut(s)	47, 140, 283, 343
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	6 cut(s)	13, 117, 121, 399, 454, 468
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	7 cut(s)	124, 386, 487, 544, 555, 574, 595
MseI	TTAA	4 cut(s)	120, 141, 402, 477
MspCI	CTTAAG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	206, 515, 521
NdeII	GATC	1 cut(s)	188
NlaIII	CATG	5 cut(s)	35, 266, 485, 551, 608
NlaIV	GGNNCC	2 cut(s)	95, 611
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	2 cut(s)	266, 485
PagI	TCATGA	2 cut(s)	31, 547
PceI	AGGCCT	1 cut(s)	584
PciI	ACATGT	2 cut(s)	262, 481
PkrI	GCNGC	2 cut(s)	211, 517
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PscI	ACATGT	2 cut(s)	262, 481
PshBI	ATTAAT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	338
PspN4I	GGNNCC	2 cut(s)	95, 611
PspPI	GGNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	188
RsaI	GTAC	3 cut(s)	397, 544, 573
RsaNI	GTAC	3 cut(s)	396, 543, 572
SaqAI	TTAA	4 cut(s)	120, 141, 402, 477
SatI	GCNGC	2 cut(s)	210, 516
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	2 cut(s)	145, 502
SfcI	CTRYAG	2 cut(s)	81, 218
SinI	GGWCC	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	6 cut(s)	13, 117, 121, 399, 454, 468
SseBI	AGGCCT	1 cut(s)	584
SspMI	CTAG	3 cut(s)	239, 249, 530
StuI	AGGCCT	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	2 cut(s)	349, 577
TaqI	TCGA	1 cut(s)	381
TasI	AATT	6 cut(s)	13, 117, 121, 399, 454, 468
TatI	WGTACW	1 cut(s)	542
Tru1I	TTAA	4 cut(s)	120, 141, 402, 477
Tru9I	TTAA	4 cut(s)	120, 141, 402, 477
TscAI	CASTG	2 cut(s)	202, 304
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	209, 515
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	48, 57
TspRI	CASTG	2 cut(s)	202, 304
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	93
VspI	ATTAAT	1 cut(s)	120
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	2 cut(s)	266, 485
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	3 cut(s)	239, 249, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.