Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

9029042 .. 9030724

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15941.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGACACCACCGTGACGCCAGCCCTAGTCTCCAGTTGGTGCAACGTCGTGAAGAACCCAATGCCCTCAATCACCACCACCAACCTCTTGGTCGATAGCTGCGAGCTCAGAGACATGGCACTGAGCGCACCTTCGGGACTATCCTCCGCCGGTGCATATTGTCAACGTCAGAAGATGCAAGTAAGCAGCCCACATCTAATAAAATGGCATCCTCCTCCTGACGGCGGGTTCATTAAAATTAATTTTGATGCTTCTGTTCAAACTAACAAGGCTGCTATTGGGTTTGTGTTTTGGGATGCTAATGGTAATCCATTGACCGCTGCTGCGAGGCATATTGGAGACACTTTGGTACTAATGGCTAAGGCTACGGCTCTTAAGGAATCTTTACACAGCGTGGTTGCAAAGACTTTCTCATGTGCTGGTGGAAGGAGATTCGAAGATTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

150

Amino Acids

15.92

Weight (kDa)

7.71

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	147, 225, 318
AcyI	GRCGYC	1 cut(s)	17
AdeI	CACNNNGTG	1 cut(s)	394
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	221, 224
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	260
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	99, 106
AluI	AGCT	2 cut(s)	99, 106
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	3 cut(s)	34, 105, 333
ApeKI	GCWGC	5 cut(s)	99, 186, 272, 320, 323
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	5 cut(s)	86, 198, 259, 307, 310
BceAI	ACGGC	2 cut(s)	238, 384
BcoDI	GTCTC	3 cut(s)	34, 105, 333
BfaI	CTAG	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	5 cut(s)	100, 187, 273, 321, 324
BlsI	GCNGC	5 cut(s)	101, 188, 274, 322, 325
BmsI	GCATC	4 cut(s)	165, 217, 238, 286
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 224
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	208, 301
BseLI	CCNNNNNNNGG	2 cut(s)	221, 224
BseMII	CTCAG	2 cut(s)	113, 121
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	5 cut(s)	86, 198, 259, 307, 310
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	221, 224
BsmAI	GTCTC	3 cut(s)	34, 105, 333
BsmFI	GGGAC	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	108
BspACI	CCGC	3 cut(s)	147, 225, 318
BspCNI	CTCAG	2 cut(s)	114, 120
BspT104I	TTCGAA	1 cut(s)	435
BspTI	CTTAAG	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	149
BssNI	GRCGYC	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	17
BstAFI	CTTAAG	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	21, 104
BstDEI	CTNAG	3 cut(s)	107, 122, 360
BstF5I	GGATG	2 cut(s)	208, 301
BstHHI	GCGC	1 cut(s)	128
BstMAI	GTCTC	3 cut(s)	34, 105, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstV1I	GCAGC	5 cut(s)	86, 198, 259, 307, 310
BstXI	CCANNNNNNTGG	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	208, 301
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	21, 104
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	149
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	115, 414
CviJI	RGCY	8 cut(s)	23, 99, 106, 189, 272, 359, 365, 371
CviKI_1	RGCY	8 cut(s)	23, 99, 106, 189, 272, 359, 365, 371
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	3 cut(s)	107, 122, 360
DraIII	CACNNNGTG	1 cut(s)	394
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	108
FaeI	CATG	2 cut(s)	118, 417
FaiI	YATR	4 cut(s)	116, 157, 333, 415
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	2 cut(s)	114, 413
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	5 cut(s)	100, 187, 273, 321, 324
FokI	GGATG	2 cut(s)	195, 308
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	5 cut(s)	100, 187, 273, 321, 324
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	5 cut(s)	100, 187, 273, 321, 324
GsuI	CTGGAG	1 cut(s)	16
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	118, 417
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HinfI	GANTC	3 cut(s)	380, 432, 440
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	110, 171, 445
Hpy188III	TCNNGA	3 cut(s)	49, 135, 218
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	141, 420
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	2 cut(s)	45, 166
HpyCH4V	TGCA	4 cut(s)	42, 155, 178, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	3 cut(s)	107, 122, 360
HpySE526I	ACGT	2 cut(s)	45, 166
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	118, 417
HspAI	GCGC	1 cut(s)	126
LpnPI	CCDG	5 cut(s)	33, 46, 163, 231, 405
Lsp1109I	GCAGC	5 cut(s)	86, 198, 259, 307, 310
LweI	GCATC	4 cut(s)	165, 217, 238, 286
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	2 cut(s)	45, 166
MaeIII	GTNAC	1 cut(s)	13
MboII	GAAGA	3 cut(s)	64, 184, 449
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	237, 241
MnlI	CCTC	6 cut(s)	76, 95, 154, 222, 225, 321
MseI	TTAA	3 cut(s)	234, 240, 375
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	118, 417
NmuCI	GTSAC	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	435
OliI	CACNNNNGTG	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	380, 432, 440
PkrI	GCNGC	5 cut(s)	101, 188, 274, 322, 325
PshBI	ATTAAT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	108
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	234, 240, 375
SatI	GCNGC	5 cut(s)	100, 187, 273, 321, 324
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	6 cut(s)	48, 87, 101, 108, 133, 169
SfaNI	GCATC	4 cut(s)	165, 217, 238, 286
SfuI	TTCGAA	1 cut(s)	435
SgrAI	CRCCGGYG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	237, 241
SsiI	CCGC	3 cut(s)	147, 225, 318
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	2 cut(s)	48, 169
TaqI	TCGA	2 cut(s)	93, 435
TasI	AATT	2 cut(s)	237, 241
TfiI	GAWTC	3 cut(s)	380, 432, 440
Tru1I	TTAA	3 cut(s)	234, 240, 375
Tru9I	TTAA	3 cut(s)	234, 240, 375
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	5 cut(s)	99, 186, 272, 320, 323
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	126
Vha464I	CTTAAG	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.