Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

17025054 .. 17025569

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13392.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCTAAATAAGAAATATAATTTCTTCTCTGTATCAACTTCTTTAGTTTTTGATGGCTCAGTCTGGAGGAATTCTGCAGCAGGAGGATTCGTAATCCGAACCCCTAATGGCAATCCACTTGTTGCAGCTTCTTCCAATTTCAGAATTACAACAATTTCAGTTGCAAAAGCCCTTTCACTCCGAAACAGCCTCATTTGTGCCAAGGAGAGAGGCTTGTCCAGAGTGGAGGTTGAAAGAGACTCAAAGCTTGTCATCGATGCAATTAATGGCACTGTTGCTACTCCTTGGAGGATCCTCAAGCTAGTTCAAGAAATTAGAACTTTAAGGAACTCCTTTGATTATATTAGTTTCAAGCATGTTTTTAGAGAGGCCAATTTTATAGCTAATGCTGTTGCAAATTTTGGCCACAAAATAGGAGATATTCGCTTCTGGGAGGAGTGTGTTTCTCCGGAAGCTAGCCTTGCACTGTCTTTTGACTATGTAAACCACGGGTGCATTAGAGACACCTCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

172

Amino Acids

19.08

Weight (kDa)

9.51

Isoelectric Point (pI)

22.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	17 - 134	1.2e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	448
AclWI	GGATC	2 cut(s)	286, 299
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	70, 397
AgsI	TTSAA	3 cut(s)	233, 308, 352
AluBI	AGCT	5 cut(s)	128, 247, 301, 383, 455
AluI	AGCT	5 cut(s)	128, 247, 301, 383, 455
Alw26I	GTCTC	2 cut(s)	231, 495
AlwI	GGATC	2 cut(s)	286, 299
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	2 cut(s)	369, 403
ApeKI	GCWGC	2 cut(s)	77, 125
ApoI	RAATTY	2 cut(s)	70, 397
AseI	ATTAAT	1 cut(s)	264
AsuNHI	GCTAGC	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	89, 137
BccI	CCATC	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	231, 495
BfaI	CTAG	2 cut(s)	302, 456
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	2 cut(s)	78, 126
BlsI	GCNGC	2 cut(s)	79, 127
BmiI	GGNNCC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	247
BmtI	GCTAGC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	201, 284, 487
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
BseAI	TCCGGA	1 cut(s)	448
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	201, 284, 487
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	89, 137
BshFI	GGCC	2 cut(s)	371, 405
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	449
BsmAI	GTCTC	2 cut(s)	231, 495
BsnI	GGCC	2 cut(s)	371, 405
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	371, 405
BspCNI	CTCAG	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	286, 299
BssECI	CCNNGG	3 cut(s)	201, 284, 487
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	201, 284
Bst4CI	ACNGT	2 cut(s)	274, 468
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	487
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	231, 495
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	89, 137
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	371, 405
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	270, 464
Cac8I	GCNNGC	1 cut(s)	457
ClaI	ATCGAT	1 cut(s)	255
CviAII	CATG	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	201, 284
EcoRI	GAATTC	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	201, 284
ErhI	CCWWGG	2 cut(s)	201, 284
FaeI	CATG	1 cut(s)	359
FaiI	YATR	5 cut(s)	18, 342, 357, 380, 480
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	78, 126
Fsp4HI	GCNGC	2 cut(s)	78, 126
FspBI	CTAG	2 cut(s)	302, 456
GluI	GCNGC	2 cut(s)	78, 126
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	371, 405
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	1 cut(s)	359
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	87, 239
HpaII	CCGG	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	98, 143, 182
Hpy188III	TCNNGA	4 cut(s)	64, 219, 308, 449
Hpy8I	GTNNAC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	274, 468
HpyCH4V	TGCA	7 cut(s)	77, 125, 164, 260, 395, 464, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	291
LpnPI	CCDG	5 cut(s)	49, 66, 232, 415, 462
Lsp1109I	GCAGC	2 cut(s)	89, 137
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	302, 456
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	2 cut(s)	16, 123
MflI	RGATCY	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	9 cut(s)	19, 70, 136, 144, 153, 261, 312, 373, 397
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	9 cut(s)	60, 77, 200, 203, 220, 282, 305, 361, 427
Mox20I	TGGCCA	1 cut(s)	405
MroI	TCCGGA	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	3 cut(s)	264, 323, 514
Msp20I	TGGCCA	1 cut(s)	405
MspI	CCGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	1 cut(s)	291
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	79, 127
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	264, 323, 514
SatI	GCNGC	2 cut(s)	78, 126
Sau3AI	GATC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	233
SetI	ASST	7 cut(s)	130, 231, 249, 303, 385, 457, 509
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	9 cut(s)	19, 70, 136, 144, 153, 261, 312, 373, 397
SspMI	CTAG	2 cut(s)	302, 456
StyI	CCWWGG	2 cut(s)	201, 284
TaaI	ACNGT	2 cut(s)	274, 468
TaqI	TCGA	1 cut(s)	255
TasI	AATT	9 cut(s)	19, 70, 136, 144, 153, 261, 312, 373, 397
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	3 cut(s)	264, 323, 514
Tru9I	TTAA	3 cut(s)	264, 323, 514
TscAI	CASTG	2 cut(s)	277, 471
TseI	GCWGC	2 cut(s)	77, 125
TspRI	CASTG	2 cut(s)	277, 471
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	2 cut(s)	70, 397
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	2 cut(s)	302, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.