Rorug04G0183700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000710
Physical Location & Seq
Reverse (-)
32072169 .. 32072992
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0183700.1

Sequence Viewer

Length: 612 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATCGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTTGGTGGCTCAGGCGGTTACCACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAGGCTTAGTATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

203

Amino Acids

22.28

Weight (kDa)

5.85

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 1.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 1 cut(s) 530
AclI AACGTT 1 cut(s) 551
AclWI GGATC 3 cut(s) 141, 330, 343
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 91, 328
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 564, 586
AluI AGCT 4 cut(s) 53, 199, 564, 586
Alw21I GWGCWC 3 cut(s) 177, 453, 566
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 3 cut(s) 141, 330, 343
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 580
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 50, 293, 586
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 3 cut(s) 164, 306, 453
BamHI GGATCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 262, 566
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 3 cut(s) 177, 453, 566
BbvI GCAGC 3 cut(s) 62, 280, 573
BccI CCATC 4 cut(s) 90, 172, 347, 585
BceAI ACGGC 2 cut(s) 72, 469
BciT130I CCWGG 1 cut(s) 419
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 2 cut(s) 315, 594
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 587
BlpI GCTNAGC 1 cut(s) 565
BlsI GCNGC 3 cut(s) 52, 295, 588
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 4 cut(s) 6, 245, 337, 358
BmrFI CCNGG 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 4 cut(s) 93, 179, 282, 399
Bpu10I CCTNAGC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 565
BpuEI CTTGAG 2 cut(s) 113, 580
Bsa29I ATCGAT 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 306, 489
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 5 cut(s) 205, 299, 334, 367, 376
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 1 cut(s) 419
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 306, 489
BseGI GGATG 2 cut(s) 389, 577
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 539, 579
BseNI ACTGG 5 cut(s) 205, 299, 334, 367, 376
BseRI GAGGAG 3 cut(s) 44, 420, 423
BseSI GKGCMC 3 cut(s) 164, 306, 453
BseXI GCAGC 3 cut(s) 62, 280, 573
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 3 cut(s) 177, 453, 566
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 566
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 5 cut(s) 133, 186, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 565
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 530
BspCNI CTCAG 2 cut(s) 538, 578
BspDI ATCGAT 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 580
BspLI GGNNCC 4 cut(s) 6, 245, 337, 358
BspPI GGATC 3 cut(s) 141, 330, 343
BsrI ACTGG 5 cut(s) 205, 299, 334, 367, 376
BssECI CCNNGG 2 cut(s) 306, 489
BssMI GATC 5 cut(s) 133, 186, 335, 343, 412
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 525, 565, 599
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 2 cut(s) 470, 532
BstF5I GGATG 2 cut(s) 389, 577
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 5 cut(s) 136, 189, 338, 346, 415
BstMBI GATC 5 cut(s) 133, 186, 335, 343, 412
BstMWI GCNNNNNNNGC 1 cut(s) 595
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 2 cut(s) 470, 532
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 453
BstV1I GCAGC 3 cut(s) 62, 280, 573
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 3 cut(s) 133, 186, 335
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 335
Bsu15I ATCGAT 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 389, 577
BtsIMutI CAGTG 3 cut(s) 306, 360, 546
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 2 cut(s) 90, 327
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 3 cut(s) 525, 565, 599
DpnI GATC 5 cut(s) 135, 188, 337, 345, 414
DpnII GATC 5 cut(s) 133, 186, 335, 343, 412
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 566
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 470, 532
EcoICRI GAGCTC 1 cut(s) 564
EcoO65I GGTNACC 2 cut(s) 470, 532
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 566
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 6 cut(s) 71, 210, 216, 308, 605, 610
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 587
FokI GGATG 2 cut(s) 376, 564
FriOI GRGCYC 2 cut(s) 262, 566
Fsp4HI GCNGC 3 cut(s) 51, 294, 587
FspBI CTAG 2 cut(s) 315, 594
GlaI GCGC 1 cut(s) 502
GluI GCNGC 3 cut(s) 51, 294, 587
GsuI CTGGAG 4 cut(s) 93, 179, 282, 399
HapII CCGG 1 cut(s) 581
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 3 cut(s) 73, 218, 310
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 1 cut(s) 581
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 360, 451
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 559, 581
Hpy8I GTNNAC 2 cut(s) 360, 451
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 4 cut(s) 144, 252, 462, 551
HpyCH4V TGCA 2 cut(s) 397, 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 595
HpyF3I CTNAG 3 cut(s) 525, 565, 599
HpySE526I ACGT 4 cut(s) 144, 252, 462, 551
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 3 cut(s) 73, 218, 310
HspAI GCGC 1 cut(s) 501
Kpn2I TCCGGA 1 cut(s) 580
Kzo9I GATC 5 cut(s) 133, 186, 335, 343, 412
LmnI GCTCC 2 cut(s) 301, 583
Lsp1109I GCAGC 3 cut(s) 62, 280, 573
MaeI CTAG 2 cut(s) 315, 594
MaeII ACGT 4 cut(s) 144, 252, 462, 551
MaeIII GTNAC 3 cut(s) 470, 509, 532
MalI GATC 5 cut(s) 135, 188, 337, 345, 414
MboI GATC 5 cut(s) 133, 186, 335, 343, 412
MboII GAAGA 2 cut(s) 425, 490
MflI RGATCY 3 cut(s) 133, 186, 335
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 566
MluCI AATT 1 cut(s) 349
MroI TCCGGA 1 cut(s) 580
MroXI GAANNNNTTC 2 cut(s) 316, 432
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 595
NcoI CCATGG 1 cut(s) 306
NdeII GATC 5 cut(s) 133, 186, 335, 343, 412
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 4 cut(s) 6, 245, 337, 358
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 2 cut(s) 316, 432
PfeI GAWTC 2 cut(s) 100, 123
PkrI GCNGC 3 cut(s) 52, 295, 588
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 566
Psp1406I AACGTT 1 cut(s) 551
Psp6I CCWGG 1 cut(s) 417
PspEI GGTNACC 2 cut(s) 470, 532
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 4 cut(s) 6, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 3 cut(s) 133, 186, 335
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 587
Sau3AI GATC 5 cut(s) 133, 186, 335, 343, 412
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 566
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 559
SmoI CTYRAG 3 cut(s) 128, 261, 559
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 530
SspMI CTAG 2 cut(s) 315, 594
SstI GAGCTC 1 cut(s) 566
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 4 cut(s) 147, 255, 465, 554
TaqI TCGA 2 cut(s) 262, 342
TasI AATT 1 cut(s) 349
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 3 cut(s) 306, 367, 546
TseI GCWGC 3 cut(s) 50, 293, 586
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 3 cut(s) 306, 367, 546
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 2 cut(s) 315, 594
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.