Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

57326402 .. 57327000

Gene Structure 599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTGGCGGCTTCCGCTGCTGTTCTTCATAGCATTTCCAATCCTAACGGGTGTGCTAGAAGGGATTTAACTCAAACCAAACCAACCACTATTAAGTGGACACTTCCGCCTGCCCAGTGTGTTAAGTTAAACTTTGATGGATCTGTGACTAGAACTTCTGTAGCGGGTGGTTTCATAATCCGAGATAACCACGGCAACCCCTTGATTGCAGCTAATAAAAATGGTGGTTCCACTACTGTACCGGTAATGGAGACCATTGCTTTGAGAGATGGACTACTTTGTGCTCGAGAACAAAGGTGCACCACAATTGAAGTTGAAGGAGACTCTAAGTTAAGGCTGCTGAAAATTCTTAATGATATTCACGCTTTAACTACTTGCTTTAGATCGGTGAGCTTCAAACACATTTATAGGGAAGCAAATTTTGTAGCAGTTGCTATAGCAAATTTGGGGCATCGTGATGTAATGACTTCTACCTGGACCAATAGGGTTCCTCCGGAGGCCTCAAGAGCTTTATTGTTTGACATTGTAAATTGTGGATGCCGTAGAGGCTTCCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

186

Amino Acids

20.29

Weight (kDa)

9.46

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	44 - 148	1.6e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	4 cut(s)	8, 15, 107, 164
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	4 cut(s)	345, 418, 442, 555
AfaI	GTAC	1 cut(s)	240
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	311, 317, 397
AjnI	CCWGG	1 cut(s)	473
AluBI	AGCT	3 cut(s)	212, 393, 509
AluI	AGCT	3 cut(s)	212, 393, 509
Alw21I	GWGCWC	2 cut(s)	286, 302
Alw26I	GTCTC	2 cut(s)	245, 315
Alw44I	GTGCAC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	1 cut(s)	498
ApaLI	GTGCAC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	17, 209, 337
ApoI	RAATTY	4 cut(s)	345, 418, 442, 555
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AsiGI	ACCGGT	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	222, 255
Bbv12I	GWGCWC	2 cut(s)	286, 302
BbvI	GCAGC	3 cut(s)	4, 221, 324
BccI	CCATC	2 cut(s)	131, 263
BceAI	ACGGC	2 cut(s)	208, 525
BciT130I	CCWGG	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	245, 315
BfaI	CTAG	2 cut(s)	57, 150
BfmI	CTRYAG	2 cut(s)	159, 435
BglI	GCCNNNNNGGC	1 cut(s)	546
BisI	GCNGC	4 cut(s)	9, 18, 210, 338
BlsI	GCNGC	4 cut(s)	10, 19, 211, 339
Bme1390I	CCNGG	1 cut(s)	475
Bme18I	GGWCC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	229, 489
BmrFI	CCNGG	1 cut(s)	475
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	460, 527
BmuI	ACTGGG	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	2 cut(s)	241, 493
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	542
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	4, 221, 324
BshFI	GGCC	1 cut(s)	500
BshTI	ACCGGT	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	286, 302
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	242, 494
BsmAI	GTCTC	2 cut(s)	245, 315
BsnI	GGCC	1 cut(s)	500
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	286, 302
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	140, 383
BspACI	CCGC	4 cut(s)	8, 15, 107, 164
BspANI	GGCC	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	229, 489
BspPI	GGATC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	140, 383
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	542
BstKTI	GATC	2 cut(s)	143, 386
BstMAI	GTCTC	2 cut(s)	245, 315
BstMBI	GATC	2 cut(s)	140, 383
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 17, 506, 546
BstNI	CCWGG	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	473
BstSFI	CTRYAG	2 cut(s)	159, 435
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	4, 221, 324
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	542
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	241
CviJI	RGCY	7 cut(s)	11, 212, 337, 393, 500, 509, 549
CviKI_1	RGCY	7 cut(s)	11, 212, 337, 393, 500, 509, 549
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	142, 385
DpnII	GATC	2 cut(s)	140, 383
EciI	GGCGGA	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	473
FaiI	YATR	4 cut(s)	30, 176, 408, 437
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	9, 18, 210, 338
FokI	GGATG	1 cut(s)	549
Fsp4HI	GCNGC	4 cut(s)	9, 18, 210, 338
FspBI	CTAG	2 cut(s)	57, 150
GluI	GCNGC	4 cut(s)	9, 18, 210, 338
HaeIII	GGCC	1 cut(s)	500
HapII	CCGG	2 cut(s)	242, 494
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	2 cut(s)	242, 494
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	2 cut(s)	99, 300
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	4 cut(s)	287, 455, 494, 504
Hpy8I	GTNNAC	2 cut(s)	99, 300
HpyAV	CCTTC	2 cut(s)	54, 311
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	209, 300
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 17, 506, 546
HpyF3I	CTNAG	1 cut(s)	327
Kpn2I	TCCGGA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	140, 383
LpnPI	CCDG	6 cut(s)	123, 128, 255, 460, 487, 507
Lsp1109I	GCAGC	3 cut(s)	4, 221, 324
LweI	GCATC	2 cut(s)	460, 527
MaeI	CTAG	2 cut(s)	57, 150
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	142, 385
MboI	GATC	2 cut(s)	140, 383
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	286, 302
MluCI	AATT	6 cut(s)	306, 345, 418, 442, 529, 555
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	490, 501, 511, 539
MroI	TCCGGA	1 cut(s)	493
MseI	TTAA	8 cut(s)	68, 93, 123, 128, 332, 351, 368, 559
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	242, 494
MspR9I	CCNGG	1 cut(s)	475
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	4 cut(s)	14, 17, 506, 546
NdeII	GATC	2 cut(s)	140, 383
NlaIV	GGNNCC	2 cut(s)	229, 489
NmuCI	GTSAC	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	500
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	4 cut(s)	10, 19, 211, 339
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	2 cut(s)	229, 489
PspPI	GGNCC	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	8 cut(s)	68, 93, 123, 128, 332, 351, 368, 559
SatI	GCNGC	4 cut(s)	9, 18, 210, 338
Sau3AI	GATC	2 cut(s)	140, 383
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	475
SduI	GDGCHC	2 cut(s)	286, 302
SetI	ASST	5 cut(s)	214, 299, 395, 476, 511
SfaNI	GCATC	2 cut(s)	460, 527
SfcI	CTRYAG	2 cut(s)	159, 435
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	477
SlaI	CTCGAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	285, 502
SmoI	CTYRAG	2 cut(s)	285, 502
Sse9I	AATT	6 cut(s)	306, 345, 418, 442, 529, 555
SseBI	AGGCCT	1 cut(s)	500
SsiI	CCGC	4 cut(s)	8, 15, 107, 164
SspMI	CTAG	2 cut(s)	57, 150
StuI	AGGCCT	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	286
TasI	AATT	6 cut(s)	306, 345, 418, 442, 529, 555
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	8 cut(s)	68, 93, 123, 128, 332, 351, 368, 559
Tru9I	TTAA	8 cut(s)	68, 93, 123, 128, 332, 351, 368, 559
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	17, 209, 337
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	17, 163
TspRI	CASTG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	477
XapI	RAATTY	4 cut(s)	345, 418, 442, 555
XhoI	CTCGAG	1 cut(s)	285
XspI	CTAG	2 cut(s)	57, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.