Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

12464965 .. 12467079

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18903.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCAGGAGACGCCACTGCTCGATCTAGTCGACATCGCACCTCTCCCCCTTTCCAAGTATATGGAGCACCAAAGCAACCTAAATCCAACAGTTCTGCCGAATCCAAAGCCTCCTGAAACTTCCACATTTGCTCAAGATTGCGAGGAAGCCCCCCATCATTCTCCCCCCAAATTCAGAATCTCGTTGAAATCACCTATTACCACCCAAGGAAGCGAAGACGCCTCATACAAGAGGGAAATCAACCAAACCACTCCTACCACCATAAAGTGGTCTCCTCCTCTCAATCCACACATCAAGATCAATTTTGATGGCTCAGTTCAAGGGAATTTAGCTGCAGGAGGATATGTCTTCAGGAACCATGAAGGCAATGTTATTCTTTCTGGAGCTAAAAGATTGGGAAAAACAACTATACCAACTGCTGAAGCTGTGACGCTAAGAGATAGTTTAATCAAAGCAAAGGAACAAGGTTACCAGTATATCCAAGTGGAAGGTATTAATGTGAATATATCTTCTGCACAAATCAAGCCCGATTTGAATCACTCATTTCTACATGGTATCAGAGCAGTGAGGGGAGGTTCTAAGCACATAGAATTCGACTATCACTTTGTTCGTGAGAAAGTTGCACTTGGCAGTCACCGTGTCTGTTACATACCATCTGTTGACCAACCAACTGATCTACTGACAAAGTCCCTCCACAAACACCGCCATACTACCCTGTGTCTCAACCTTGTCCATCCAAGGCCGTCCATTTCTACAGAAGGCGACTCAAAACTAGTAATAGAAGTTGTTAATGGGAGAATTAGCACCCCTTGGAGAATGCTCAAGATCATTCAAGATGTCAAAAACATTGCAAGATCCTTCTCTTCTATTTCTTTCAACCATGTGTATAAAGAAGCCAACTTTATGGCAGATGCTGATGCCTTAGCTCATGAAGGACACCAGCTTCCAGATGGTCATATATGGAGTAATAGAATTCATAGCTCGGCTGCTCGGCTACTAGAGCTTTGCTCTTTGATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.88

Weight (kDa)

8.57

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	101 - 164	3.1e-07	Reverse transcriptase-like
RVT_3	PF13456	249 - 306	1.7e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	1 cut(s)	703
AclWI	GGATC	1 cut(s)	849
AcsI	RAATTY	4 cut(s)	170, 325, 590, 972
AcuI	CTGAAG	2 cut(s)	334, 441
AcyI	GRCGYC	2 cut(s)	11, 219
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	187, 320, 535, 833, 877
AhlI	ACTAGT	1 cut(s)	772
AluBI	AGCT	7 cut(s)	332, 386, 425, 926, 943, 981, 1003
AluI	AGCT	7 cut(s)	332, 386, 425, 926, 943, 981, 1003
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	3 cut(s)	2, 276, 725
AlwI	GGATC	1 cut(s)	849
AlwNI	CAGNNNCTG	1 cut(s)	914
AoxI	GGCC	1 cut(s)	740
ApeKI	GCWGC	2 cut(s)	332, 986
ApoI	RAATTY	4 cut(s)	170, 325, 590, 972
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AseI	ATTAAT	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	183, 626
BbsI	GAAGAC	2 cut(s)	222, 340
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	319, 973
BccI	CCATC	5 cut(s)	162, 302, 661, 741, 944
BceAI	ACGGC	1 cut(s)	727
BcoDI	GTCTC	3 cut(s)	2, 276, 725
BcuI	ACTAGT	1 cut(s)	772
BfaI	CTAG	3 cut(s)	26, 773, 998
BfmI	CTRYAG	2 cut(s)	333, 753
BisI	GCNGC	2 cut(s)	333, 987
BlsI	GCNGC	2 cut(s)	334, 988
BmiI	GGNNCC	1 cut(s)	356
BmsI	GCATC	2 cut(s)	901, 907
BpiI	GAAGAC	2 cut(s)	222, 340
BplI	GAGNNNNNCTC	1 cut(s)	992
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	922
BpuEI	CTTGAG	2 cut(s)	117, 806
BsaBI	GATNNNNATC	1 cut(s)	534
BsaHI	GRCGYC	2 cut(s)	11, 219
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	205, 737, 809
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	2 cut(s)	373, 846
Bse8I	GATNNNNATC	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	205, 737, 809
BseGI	GGATG	1 cut(s)	733
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMI	GCAATG	2 cut(s)	373, 846
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	2 cut(s)	264, 267
BseXI	GCAGC	2 cut(s)	319, 973
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	742
BsiHKAI	GWGCWC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	3 cut(s)	2, 276, 725
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	1 cut(s)	742
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	5 cut(s)	22, 297, 673, 825, 854
BspACI	CCGC	1 cut(s)	703
BspANI	GGCC	1 cut(s)	742
BspCNI	CTCAG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	1 cut(s)	356
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	849
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	2 cut(s)	373, 846
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	3 cut(s)	205, 737, 809
BssMI	GATC	5 cut(s)	22, 297, 673, 825, 854
BssNI	GRCGYC	2 cut(s)	11, 219
BssT1I	CCWWGG	3 cut(s)	205, 737, 809
Bst4CI	ACNGT	2 cut(s)	91, 638
Bst6I	CTCTTC	1 cut(s)	868
BstACI	GRCGYC	2 cut(s)	11, 219
BstDEI	CTNAG	4 cut(s)	313, 434, 579, 922
BstEII	GGTNACC	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	733
BstKTI	GATC	5 cut(s)	25, 300, 676, 828, 857
BstMAI	GTCTC	3 cut(s)	2, 276, 725
BstMBI	GATC	5 cut(s)	22, 297, 673, 825, 854
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 1000
BstPI	GGTNACC	1 cut(s)	467
BstSFI	CTRYAG	2 cut(s)	333, 753
BstV1I	GCAGC	2 cut(s)	319, 973
BstV2I	GAAGAC	2 cut(s)	222, 340
BstX2I	RGATCY	1 cut(s)	854
BstXI	CCANNNNNNTGG	2 cut(s)	61, 904
BstYI	RGATCY	1 cut(s)	854
BsuRI	GGCC	1 cut(s)	742
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	2 cut(s)	14, 570
BtsIMutI	CAGTG	2 cut(s)	14, 570
CaiI	CAGNNNCTG	1 cut(s)	914
CciI	TCATGA	1 cut(s)	928
CseI	GACGC	3 cut(s)	19, 227, 439
CviAII	CATG	4 cut(s)	359, 551, 881, 929
DdeI	CTNAG	4 cut(s)	313, 434, 579, 922
DpnI	GATC	5 cut(s)	24, 299, 675, 827, 856
DpnII	GATC	5 cut(s)	22, 297, 673, 825, 854
Eam1104I	CTCTTC	1 cut(s)	868
EarI	CTCTTC	1 cut(s)	868
Eco130I	CCWWGG	3 cut(s)	205, 737, 809
Eco31I	GGTCTC	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	334, 441
Eco91I	GGTNACC	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	467
EcoRI	GAATTC	2 cut(s)	590, 972
EcoT14I	CCWWGG	3 cut(s)	205, 737, 809
ErhI	CCWWGG	3 cut(s)	205, 737, 809
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	4 cut(s)	362, 554, 884, 932
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	4 cut(s)	358, 550, 880, 928
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	333, 987
FokI	GGATG	1 cut(s)	720
Fsp4HI	GCNGC	2 cut(s)	333, 987
FspBI	CTAG	3 cut(s)	26, 773, 998
GluI	GCNGC	2 cut(s)	333, 987
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	742
HgaI	GACGC	3 cut(s)	19, 227, 439
Hin1I	GRCGYC	2 cut(s)	11, 219
Hin1II	CATG	4 cut(s)	362, 554, 884, 932
HincII	GTYRAC	2 cut(s)	31, 661
HindII	GTYRAC	2 cut(s)	31, 661
HinfI	GANTC	4 cut(s)	100, 177, 535, 764
HphI	GGTGA	2 cut(s)	183, 626
Hpy166II	GTNNAC	2 cut(s)	31, 661
Hpy188I	TCNGA	2 cut(s)	176, 560
Hpy8I	GTNNAC	2 cut(s)	31, 661
HpyAV	CCTTC	5 cut(s)	356, 482, 752, 868, 926
HpyCH4III	ACNGT	2 cut(s)	91, 638
HpyCH4V	TGCA	5 cut(s)	4, 335, 515, 623, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 1000
HpyF3I	CTNAG	4 cut(s)	313, 434, 579, 922
Hsp92I	GRCGYC	2 cut(s)	11, 219
Hsp92II	CATG	4 cut(s)	362, 554, 884, 932
Kzo9I	GATC	5 cut(s)	22, 297, 673, 825, 854
LmnI	GCTCC	2 cut(s)	64, 383
LpnPI	CCDG	8 cut(s)	126, 321, 337, 366, 485, 728, 953, 960
Lsp1109I	GCAGC	2 cut(s)	319, 973
LweI	GCATC	2 cut(s)	901, 907
MaeI	CTAG	3 cut(s)	26, 773, 998
MaeIII	GTNAC	4 cut(s)	427, 467, 632, 644
MalI	GATC	5 cut(s)	24, 299, 675, 827, 856
MboI	GATC	5 cut(s)	22, 297, 673, 825, 854
MboII	GAAGA	4 cut(s)	227, 340, 501, 855
MflI	RGATCY	1 cut(s)	854
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	6 cut(s)	170, 301, 325, 590, 798, 972
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	110
MseI	TTAA	3 cut(s)	446, 495, 789
Mva1269I	GAATGC	1 cut(s)	822
MwoI	GCNNNNNNNGC	2 cut(s)	10, 1000
NdeII	GATC	5 cut(s)	22, 297, 673, 825, 854
NlaIII	CATG	4 cut(s)	362, 554, 884, 932
NlaIV	GGNNCC	1 cut(s)	356
NmeAIII	GCCGAG	2 cut(s)	962, 970
NmuCI	GTSAC	2 cut(s)	427, 632
PagI	TCATGA	1 cut(s)	928
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	3 cut(s)	100, 177, 535
PflFI	GACNNNGTC	1 cut(s)	685
PflMI	CCANNNNNTGG	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	334, 988
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
PshBI	ATTAAT	1 cut(s)	495
PspEI	GGTNACC	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	914
PsuI	RGATCY	1 cut(s)	854
PsyI	GACNNNGTC	1 cut(s)	685
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	446, 495, 789
SatI	GCNGC	2 cut(s)	333, 987
Sau3AI	GATC	5 cut(s)	22, 297, 673, 825, 854
SchI	GAGTC	1 cut(s)	758
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	2 cut(s)	901, 907
SfcI	CTRYAG	2 cut(s)	333, 753
SmlI	CTYRAG	2 cut(s)	132, 821
SmoI	CTYRAG	2 cut(s)	132, 821
SpeI	ACTAGT	1 cut(s)	772
Sse9I	AATT	6 cut(s)	170, 301, 325, 590, 798, 972
SsiI	CCGC	1 cut(s)	703
SspMI	CTAG	3 cut(s)	26, 773, 998
StyI	CCWWGG	3 cut(s)	205, 737, 809
TaaI	ACNGT	2 cut(s)	91, 638
TaqI	TCGA	3 cut(s)	21, 30, 594
TasI	AATT	6 cut(s)	170, 301, 325, 590, 798, 972
TfiI	GAWTC	3 cut(s)	100, 177, 535
Tru1I	TTAA	3 cut(s)	446, 495, 789
Tru9I	TTAA	3 cut(s)	446, 495, 789
TscAI	CASTG	2 cut(s)	21, 570
TseFI	GTSAC	2 cut(s)	427, 632
TseI	GCWGC	2 cut(s)	332, 986
Tsp45I	GTSAC	2 cut(s)	427, 632
TspDTI	ATGAA	3 cut(s)	375, 945, 965
TspRI	CASTG	2 cut(s)	21, 570
Tth111I	GACNNNGTC	1 cut(s)	685
Van91I	CCANNNNNTGG	1 cut(s)	267
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	4 cut(s)	170, 325, 590, 972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	947
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	3 cut(s)	26, 773, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.