Rroxscaffold_6G00400320

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000710
Physical Location & Seq
Forward (+)
22445087 .. 22446407
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400320.1

Sequence Viewer

Length: 294 bp
ATGCTTGCTGTCTCTATTGGTGAGAATTACAGAAGAAACAAGCCTTGCCACTTCAAGGGTCCTGCTTCTACCTCTCAAATTATTCGCTGGTTACCTCCTCCTATTGTTAACGATAAGAAAGCTGCTGCTAGTTTTATTATTAGAGATCACGATGGTTCCTCCCTTTTTGCCGGTGCAAGAGCTATTGGTCATGCTTCTATCCCCATTGCTGAAGACAGTGCTGTTCGTGATGGTTTTTTCATGCCCTCCTCCTTAATTGCTGAAAGCTTTATGTCGAAAGTGACTCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

97

Amino Acids

10.46

Weight (kDa)

9.43

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 55
AluBI AGCT 3 cut(s) 122, 182, 267
AluI AGCT 3 cut(s) 122, 182, 267
Alw26I GTCTC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 122, 125
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 109, 112
BccI CCATC 2 cut(s) 146, 224
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 60, 157
BpiI GAAGAC 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 87, 238
BseXI GCAGC 2 cut(s) 109, 112
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 60, 157
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 90
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 145
BstPI GGTNACC 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 109, 112
BstV2I GAAGAC 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 2 cut(s) 191, 241
CviJI RGCY 4 cut(s) 43, 122, 182, 267
CviKI_1 RGCY 4 cut(s) 43, 122, 182, 267
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 231
Eco91I GGTNACC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 90
FaeI CATG 2 cut(s) 194, 244
FaiI YATR 3 cut(s) 192, 242, 272
FatI CATG 2 cut(s) 190, 240
Fnu4HI GCNGC 2 cut(s) 123, 126
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 1 cut(s) 129
GluI GCNGC 2 cut(s) 123, 126
HapII CCGG 1 cut(s) 171
Hin1II CATG 2 cut(s) 194, 244
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 1 cut(s) 283
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 149, 227
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 176
Hsp92II CATG 2 cut(s) 194, 244
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 73, 75, 184
Lsp1109I GCAGC 2 cut(s) 109, 112
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 90, 280
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 45, 224
MluCI AATT 3 cut(s) 25, 78, 255
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 6 cut(s) 82, 105, 108, 169, 256, 259
MseI TTAA 2 cut(s) 108, 254
MspI CCGG 1 cut(s) 171
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 194, 244
NlaIV GGNNCC 2 cut(s) 60, 157
NmuCI GTSAC 1 cut(s) 280
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 60, 157
PspPI GGNCC 1 cut(s) 59
PspPPI RGGWCCY 1 cut(s) 59
SaqAI TTAA 2 cut(s) 108, 254
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 277
SetI ASST 5 cut(s) 74, 97, 124, 184, 269
SinI GGWCC 1 cut(s) 59
Sse9I AATT 3 cut(s) 25, 78, 255
SspMI CTAG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 275
TasI AATT 3 cut(s) 25, 78, 255
Tru1I TTAA 2 cut(s) 108, 254
Tru9I TTAA 2 cut(s) 108, 254
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 122, 125
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 229
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 59
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.