Prupe.6G046000_v2.0.a1

ribonuclease H protein At1g65750

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
3322286 .. 3323824
1539 bp
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UTR
Exon/CDS
Intron
Prupe.6G046000.1

Sequence Viewer

Length: 222 bp
ATGAAGATTATCTCTTGGAATATAAGAGGTCTGGGAAGCAGAAGAAAGAGGCTGGTTTTGAAGGAACAGTTGGTGTGGCTTAGGCCGGAAATCGTAATTTTGCAAGAGACTAAGAAACAAGCAATTGACAGGAGATTGGTGGCTAGTGTGTGGGGTTCTAGATTCAGGGATTGGGTCTGTGTGCCTTCAACAGGCAGGTCTGGTGGTATTGTGATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.47

Weight (kDa)

11.65

Isoelectric Point (pI)

70.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 61, 189
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 144, 159
BfuAI ACCTGC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 191
BshFI GGCC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 1 cut(s) 85
BspANI GGCC 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 80, 111
BstENI CCTNNNNNAGG 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 85
BveI ACCTGC 1 cut(s) 186
CviJI RGCY 4 cut(s) 52, 79, 85, 143
CviKI_1 RGCY 4 cut(s) 52, 79, 85, 143
DdeI CTNAG 2 cut(s) 80, 111
EcoNI CCTNNNNNAGG 1 cut(s) 189
FaiI YATR 1 cut(s) 23
FspBI CTAG 2 cut(s) 144, 159
HaeIII GGCC 1 cut(s) 85
HapII CCGG 1 cut(s) 86
HinfI GANTC 1 cut(s) 162
HpaII CCGG 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 55, 195
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 80, 111
LpnPI CCDG 8 cut(s) 17, 38, 99, 115, 151, 177, 181, 186
MaeI CTAG 2 cut(s) 144, 159
MboII GAAGA 2 cut(s) 16, 54
MfeI CAATTG 1 cut(s) 123
MluCI AATT 2 cut(s) 96, 123
MnlI CCTC 2 cut(s) 20, 42
MspI CCGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 123
PfeI GAWTC 1 cut(s) 162
SetI ASST 2 cut(s) 31, 200
Sse9I AATT 2 cut(s) 96, 123
SspMI CTAG 2 cut(s) 144, 159
TaaI ACNGT 1 cut(s) 69
TasI AATT 2 cut(s) 96, 123
TfiI GAWTC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 189
XbaI TCTAGA 1 cut(s) 158
XspI CTAG 2 cut(s) 144, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.