Rorug02G0235200

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000710
Physical Location & Seq
Reverse (-)
23476904 .. 23488491
11588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0235200.1

Sequence Viewer

Length: 3213 bp
ATGTCGGAGCCCAAGCGCTATGGTCTTGGAAATCAATTAGATATTCAGCAGATACTTTTAGAAGCTAAACACCGATGGCTACGCCCAGCTGAAATATGCGAAATTCTTCAAAATTATAAAAAATTTCATATATCTTCAGAGCCTGCAAGTACACCACCTGGTGGATCACTTTTTCTTTTCGATCGAAAGGTGCTGAGGTATTTCAGGAAAGATGGTCATAACTGGAGGAAGAAAAAGGATGGAAAGACAGTGAAGGAGGCCCATGAGAGACTCAAGGCTGGAAGTGTTGATGTGTTGCACTGCTACTATGCCCATGGAGAAGACAATGAAAATTTCCAAAGACGCAGTTATTGGATGCTTGAAGAGGACCTCTCGCACATTGTTCTCGTCCACTACCGGGAAGTAAAGGGAAATAGGACAAATTTCAATCATGTTAAAGAGACTGAAGGTATTCCCTATTCCAATGGAGCTGAAGAAATTGCCCGCCAGTCTGAGATGGAGAATTCTGTTTCTTCTAGTTTCAATCCAAGTAGTTACCAAATGCATTCTCAAGTTACGGACGCGACAAGCTTGAGTAGTGCTCAGGCGTCAGAGTTCGAAGATGCCGAATCAGCATTTTATAACCAAGCAAGTTCCCGGTTGCAGCCTGTGGCTGAGAAAATTAATTCTGAGTTCTCTGATGCGTACTATCCTGCATTCTCAAATGATTTTCAAGAAAAGTTGTCAACCATTCCTGGGGTGGATTTTAGCTCACTCTCTCAAGCATATAAGAGGGAAGATAGTATTGATGCTGGAGATATCTATGAGCCCAGGAAAGATCGTGAATTTGCATTATGGGACGATATGGAAAACAGTGCTACTGGCATTCAATCTTTTCAGTCATCATTTTCAGCAACACATTCTGATACAATGGGAAGCTTTCCTAAGATTGAGACGATTGGGCATCTTTATACAGACAGTTTTGATAAAGGGCTCGTGTATGGGACTGAAAATAGACCAAAGGTCCAACAAAGTTGGCAGACTTCTGAAGGATCATCAAACTGGCCTATGGATCAGAGCTTGCAATCACATACAGAATACAATGTCACCACTAAGCTCGATGAAGGAGCCGATACCACTGATTTACTCAAGTCCTTGGGGCCTTTCCTTATGGATTCAGACAAGCAAAATGACCTTCAATTTCATCTTTCAAACACAGATACTATTTCAAAGAGAAATGATAACATTGAGGGAAAAGCTGATCGCCCTTCTGCTATTAAGCCTCTGTTGGGATTCGATGATGGTCTGAAGAAGCTCGACAGTTTCAACCGATGGATGAGTAAAGAACTTGAAGATGTGGATGAGCCACAAATGCAGTCCAGTTCTGGAGCCTACTGGGAAACTGTTGAAAGTGAGAATGAGGTTGATGAGTCCAGTGTTCCCCTGCAAGTACGCTTGGATAGCTATATGCTGGGGCCTTCTCTTTCTCATGACCAGCTCTTTAGCATTGTTGATTTCTCACCAAACTGGGCATATGAAAACTCTGAAATCAAGGTTTTGATCACAGGAAAATTTTTGAAAAGTCAACATGCAGAAAGTTGTAAATGGTCATGTATGTTTGGGGAAGTTGAAGTTCCTGCTGAGGTTATAGCAGATGGTGTTCTTCGTTGTTATACTCCCATACACAAGGCTGGAAGGGTTCCGTTTTATGTGACATGTTCCAATAGGCTGGCTTGTAGTGAAGTAAGGGAATTTGAATACCGGGTAGCCCAAATTCAAGATGTTGATTCTAAAGATTATTACAGTGACTGCTCAAATGAAACACTCAGTATGCGCTTCGGAAAATTATTGTCTTTAAGCTCTACCTCACCTAATTGTGATTCAGCAAGTACAGCAGAGAATTCTGAGTTGACCGCTAAAATTACTTCTATGCTGAAAAATGACAATGATGAATGGGACAAGATGCTACAACTTACGTCAGACGAGGACTTTTCCTTGGAAAGAGTAGAGGATCAGTTGCTTCAACAGTTACTTAAGGAGAAGTTGCATGCATGGCTCTTGCAGAAGCTGGCTGCTGGTGGTAAAGGCCCTAGTGTTCTAGACGAGGGTGGCCAAGGTGTGTTACATTTTGGAGCTGCTCTTGGCTATGACTGGGTCTTACTGCCCACAATAACTGCTGGAGTTAGCGTCAATTTTCGTGATGTGAATGGATGGACGGCACTTCATTGGGCAGCCTTTTGTGGCAGAGAGCGCACAGTCGCTTCTCTCATCTCCCTGGGTGCAGCTCCTGGAGCATTAACAGATCCAACTACCAAATATCCTTCAGGAGAAACACCCGCAGACCTAGCTTCTGAACAAGGACACAAAGGGATTGCTGGATATCTTGCAGAATCTGCTTTGAGTGCCCACCTTGAATCTCTTAATTTGGATCTCAAGAACGGAAATTCGGCAGAGACTTCAGGAACAAAAGCAGTTTCAGGTTCTAGCAGGGATGGGGAGTTAACGGATGGGCTTTCCCTGAGGGATTCTTTAACTGCTGTCTGTAATGCGACACAAGCTGCTGCTCGTATTCATCAAGTGTTCAGGGTACAATCTTTCCAAAGGAAGCAGTTGAAAGAGTACGATGGTGATAAATTTGGATTTTCCAATGAACGGGCATTATCACTTATTGCACTCAAGTCACATAAGGCAGGGAAACGTGATGAGCATGTGGATGCTGCAGCAGTACGAATACAAAATAAGTTCCGTAGTTGGAAGGGTAGAAAAGACTATTTGATAATCCGACAACGGATTGTCAAAATTCAGGCCCATGTAAGAGGTCACCAGGTGAGGAAAAACTATAGAAAGATAGTGTGGTCTGTCGGAATTGTAGAGAAGATCATCCTGCGTTGGAGAAGAAAAGGAAGTGGGTTGCGTGGGTTCAAGCCAGAACCTGTTACTGAGGGCCCCAGCATGCAAGTTTCATCCACAAAGGATGATGATTATGACTTACTGAAAGAAGGAAGGAAGCAAACAGAGGAAAGGCTGCAAAAGGCACTTGCTAGGGTGAAATCCATGGTTCAGTATCCTGAAGCAAGAGATCAATACCATCGACTTTTAAATGTTGTCACTGAGATTCAGGAAACCAAGGTGCTGAATAGTTCAGAAGGAACATCAGCTTATATGGATGATGACCTCATAGACATTGAAGCATTGTTTGATGATGACGTTTTGATGCCTACAGCAGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

1070

Amino Acids

120.26

Weight (kDa)

5.39

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 21 - 134 3.5e-50 CG-1 domain
Ank_2 PF12796 703 - 791 7.7e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 117, 621
AccB7I CCANNNNNTGG 1 cut(s) 161
AccII CGCG 1 cut(s) 563
AciI CCGC 3 cut(s) 484, 1893, 2316
AclWI GGATC 6 cut(s) 172, 1039, 1059, 1998, 2276, 2415
AcoI YGGCCR 1 cut(s) 2089
AcuI CTGAAG 8 cut(s) 120, 465, 492, 1047, 1307, 2286, 2421, 3069
AcyI GRCGYC 1 cut(s) 587
AdeI CACNNNGTG 2 cut(s) 161, 2806
AfaI GTAC 7 cut(s) 151, 686, 1431, 1870, 2568, 2600, 2706
AfeI AGCGCT 1 cut(s) 17
AfiI CCNNNNNNNGG 5 cut(s) 161, 397, 735, 1268, 2631
AflII CTTAAG 1 cut(s) 2012
AflIII ACRYGT 1 cut(s) 1694
AhdI GACNNNNNGTC 1 cut(s) 1001
AjnI CCWGG 6 cut(s) 157, 733, 809, 2253, 2266, 2802
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 4 cut(s) 262, 434, 926, 2426
AlwI GGATC 6 cut(s) 172, 1039, 1059, 1998, 2276, 2415
AlwNI CAGNNNCTG 6 cut(s) 143, 1788, 2047, 2267, 2372, 2912
Aor51HI AGCGCT 1 cut(s) 17
AoxI GGCC 8 cut(s) 258, 1043, 1139, 1454, 2065, 2089, 2784, 2923
ApaI GGGCCC 1 cut(s) 2927
AseI ATTAAT 1 cut(s) 663
Asp700I GAANNNNTTC 2 cut(s) 105, 450
AspLEI GCGC 3 cut(s) 18, 1815, 2232
AspS9I GGNCC 9 cut(s) 259, 367, 1003, 1139, 1454, 2066, 2785, 2923, 2924
AsuC2I CCSGG 3 cut(s) 398, 637, 1742
AsuHPI GGTGA 7 cut(s) 1078, 1491, 1839, 2618, 2792, 2818, 3037
AsuII TTCGAA 1 cut(s) 597
AvaII GGWCC 2 cut(s) 367, 1003
AxyI CCTNAGG 1 cut(s) 2498
BaeGI GKGCMC 2 cut(s) 2386, 2927
BalI TGGCCA 1 cut(s) 2091
BanII GRGCYC 4 cut(s) 12, 810, 975, 2927
BauI CACGAG 1 cut(s) 974
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 583
BbvCI CCTCAGC 2 cut(s) 194, 1620
BceAI ACGGC 1 cut(s) 2211
BciT130I CCWGG 6 cut(s) 159, 735, 811, 2255, 2268, 2804
BciVI GTATCC 1 cut(s) 3054
BclI TGATCA 1 cut(s) 1539
BcnI CCSGG 3 cut(s) 398, 637, 1742
BcoDI GTCTC 4 cut(s) 262, 434, 926, 2426
BfaI CTAG 6 cut(s) 516, 2070, 2078, 2324, 2463, 3021
BfmI CTRYAG 3 cut(s) 2697, 2818, 3198
BfoI RGCGCY 1 cut(s) 19
BfrI CTTAAG 1 cut(s) 2012
BfuI GTATCC 1 cut(s) 3054
Bme1390I CCNGG 9 cut(s) 159, 398, 637, 735, 811, 1742, 2255, 2268, 2804
Bme18I GGWCC 2 cut(s) 367, 1003
BmeRI GACNNNNNGTC 1 cut(s) 1001
BmgT120I GGNCC 9 cut(s) 259, 367, 1003, 1139, 1454, 2066, 2785, 2923, 2924
BmiI GGNNCC 8 cut(s) 9, 1108, 1140, 1369, 1455, 1680, 2925, 2926
BmrFI CCNGG 9 cut(s) 159, 398, 637, 735, 811, 1742, 2255, 2268, 2804
BmrI ACTGGG 3 cut(s) 1384, 1516, 2140
BmsI GCATC 8 cut(s) 345, 592, 670, 778, 952, 1932, 2683, 3183
BmuI ACTGGG 3 cut(s) 1384, 1516, 2140
BpiI GAAGAC 1 cut(s) 327
BplI GAGNNNNNCTC 4 cut(s) 356, 388, 565, 597
BpmI CTGGAG 5 cut(s) 244, 813, 1386, 2178, 2289
Bpu10I CCTNAGC 3 cut(s) 194, 582, 1620
Bpu14I TTCGAA 1 cut(s) 597
BpuEI CTTGAG 7 cut(s) 257, 534, 592, 744, 1112, 2396, 2639
BpuMI CCSGG 3 cut(s) 398, 637, 1742
BsaHI GRCGYC 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 2151, 2181
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 397, 735, 1268, 2631
Bse1I ACTGG 9 cut(s) 227, 487, 865, 1046, 1359, 1379, 1413, 1511, 2135
Bse21I CCTNAGG 1 cut(s) 2498
BseBI CCWGG 6 cut(s) 159, 735, 811, 2255, 2268, 2804
BseLI CCNNNNNNNGG 5 cut(s) 161, 397, 735, 1268, 2631
BseNI ACTGG 9 cut(s) 227, 487, 865, 1046, 1359, 1379, 1413, 1511, 2135
BseSI GKGCMC 2 cut(s) 2386, 2927
BseYI CCCAGC 3 cut(s) 85, 1450, 2927
BsgI GTGCAG 1 cut(s) 2280
Bsh1236I CGCG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 8 cut(s) 260, 1045, 1141, 1456, 2067, 2091, 2786, 2925
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 3 cut(s) 397, 637, 1741
BslFI GGGAC 3 cut(s) 851, 997, 1949
BslI CCNNNNNNNGG 5 cut(s) 161, 397, 735, 1268, 2631
BsmAI GTCTC 4 cut(s) 262, 434, 926, 2426
BsmBI CGTCTC 1 cut(s) 926
BsmFI GGGAC 3 cut(s) 851, 997, 1949
BsmI GAATGC 3 cut(s) 544, 695, 864
BsnI GGCC 8 cut(s) 260, 1045, 1141, 1456, 2067, 2091, 2786, 2925
Bsp119I TTCGAA 1 cut(s) 597
Bsp120I GGGCCC 1 cut(s) 2923
Bsp1286I GDGCHC 6 cut(s) 12, 583, 810, 975, 2386, 2927
Bsp19I CCATGG 2 cut(s) 313, 3033
BspACI CCGC 3 cut(s) 484, 1893, 2316
BspANI GGCC 8 cut(s) 260, 1045, 1141, 1456, 2067, 2091, 2786, 2925
BspFNI CGCG 1 cut(s) 563
BspHI TCATGA 1 cut(s) 1468
BspLI GGNNCC 8 cut(s) 9, 1108, 1140, 1369, 1455, 1680, 2925, 2926
BspMAI CTGCAG 1 cut(s) 2701
BspPI GGATC 6 cut(s) 172, 1039, 1059, 1998, 2276, 2415
BspT104I TTCGAA 1 cut(s) 597
BspTI CTTAAG 1 cut(s) 2012
BsrI ACTGG 9 cut(s) 227, 487, 865, 1046, 1359, 1379, 1413, 1511, 2135
BssNI GRCGYC 1 cut(s) 587
BssSI CACGAG 1 cut(s) 974
BssT1I CCWWGG 6 cut(s) 313, 1134, 1974, 2092, 3033, 3105
Bst2BI CACGAG 1 cut(s) 974
Bst2UI CCWGG 6 cut(s) 159, 735, 811, 2255, 2268, 2804
Bst4CI ACNGT 8 cut(s) 250, 854, 959, 1301, 1384, 1784, 2007, 2236
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 587
BstAFI CTTAAG 1 cut(s) 2012
BstAPI GCANNNNNTGC 1 cut(s) 2372
BstBI TTCGAA 1 cut(s) 597
BstC8I GCNNGC 7 cut(s) 144, 484, 1061, 1710, 2028, 2049, 2933
BstDSI CCRYGG 2 cut(s) 313, 3033
BstEII GGTNACC 1 cut(s) 2798
BstFNI CGCG 1 cut(s) 563
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 3 cut(s) 18, 1815, 2232
BstMAI GTCTC 4 cut(s) 262, 434, 926, 2426
BstMCI CGRYCG 1 cut(s) 184
BstNI CCWGG 6 cut(s) 159, 735, 811, 2255, 2268, 2804
BstNSI RCATGY 5 cut(s) 1571, 1698, 2030, 2690, 2935
BstPI GGTNACC 1 cut(s) 2798
BstSCI CCNGG 9 cut(s) 157, 396, 635, 733, 809, 1740, 2253, 2266, 2802
BstSFI CTRYAG 3 cut(s) 2697, 2818, 3198
BstSLI GKGCMC 2 cut(s) 2386, 2927
BstUI CGCG 1 cut(s) 563
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 2281, 2407
BstXI CCANNNNNNTGG 1 cut(s) 1708
BstYI RGATCY 2 cut(s) 2281, 2407
Bsu36I CCTNAGG 1 cut(s) 2498
BsuI GTATCC 1 cut(s) 3054
BsuRI GGCC 8 cut(s) 260, 1045, 1141, 1456, 2067, 2091, 2786, 2925
BtgI CCRYGG 2 cut(s) 313, 3033
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 7 cut(s) 255, 298, 859, 1116, 1420, 1789, 3087
Cac8I GCNNGC 7 cut(s) 144, 484, 1061, 1710, 2028, 2049, 2933
CaiI CAGNNNCTG 6 cut(s) 143, 1788, 2047, 2267, 2372, 2912
CciI TCATGA 1 cut(s) 1468
CfoI GCGC 3 cut(s) 18, 1815, 2232
Cfr13I GGNCC 9 cut(s) 259, 367, 1003, 1139, 1454, 2066, 2785, 2923, 2924
CseI GACGC 4 cut(s) 351, 569, 576, 2155
CsiI ACCWGGT 2 cut(s) 157, 2802
Csp6I GTAC 7 cut(s) 150, 685, 1430, 1869, 2567, 2599, 2705
CviQI GTAC 7 cut(s) 150, 685, 1430, 1869, 2567, 2599, 2705
DraI TTTAAA 1 cut(s) 3078
DraIII CACNNNGTG 2 cut(s) 161, 2806
DriI GACNNNNNGTC 1 cut(s) 1001
EaeI YGGCCR 1 cut(s) 2089
Eam1104I CTCTTC 1 cut(s) 357
Eam1105I GACNNNNNGTC 1 cut(s) 1001
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 6 cut(s) 313, 1134, 1974, 2092, 3033, 3105
Eco24I GRGCYC 4 cut(s) 12, 810, 975, 2927
Eco32I GATATC 2 cut(s) 799, 2360
Eco47I GGWCC 2 cut(s) 367, 1003
Eco47III AGCGCT 1 cut(s) 17
Eco57I CTGAAG 8 cut(s) 120, 465, 492, 1047, 1307, 2286, 2421, 3069
Eco81I CCTNAGG 1 cut(s) 2498
Eco91I GGTNACC 1 cut(s) 2798
EcoO109I RGGNCCY 6 cut(s) 367, 1139, 1454, 2066, 2923, 2924
EcoO65I GGTNACC 1 cut(s) 2798
EcoRI GAATTC 2 cut(s) 502, 1879
EcoRII CCWGG 6 cut(s) 157, 733, 809, 2253, 2266, 2802
EcoRV GATATC 2 cut(s) 799, 2360
EcoT14I CCWWGG 6 cut(s) 313, 1134, 1974, 2092, 3033, 3105
EcoT22I ATGCAT 2 cut(s) 546, 2032
EcoT38I GRGCYC 4 cut(s) 12, 810, 975, 2927
ErhI CCWWGG 6 cut(s) 313, 1134, 1974, 2092, 3033, 3105
Esp3I CGTCTC 1 cut(s) 926
FaqI GGGAC 3 cut(s) 851, 997, 1949
FauI CCCGC 2 cut(s) 491, 2323
FauNDI CATATG 1 cut(s) 1513
FbaI TGATCA 1 cut(s) 1539
FriOI GRGCYC 4 cut(s) 12, 810, 975, 2927
FspBI CTAG 6 cut(s) 516, 2070, 2078, 2324, 2463, 3021
GlaI GCGC 3 cut(s) 17, 1814, 2231
GsaI CCCAGC 3 cut(s) 89, 1454, 2931
GsuI CTGGAG 5 cut(s) 244, 813, 1386, 2178, 2289
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 8 cut(s) 260, 1045, 1141, 1456, 2067, 2091, 2786, 2925
HapII CCGG 3 cut(s) 397, 637, 1741
HgaI GACGC 4 cut(s) 351, 569, 576, 2155
HhaI GCGC 3 cut(s) 18, 1815, 2232
Hin1I GRCGYC 1 cut(s) 587
Hin6I GCGC 3 cut(s) 16, 1813, 2230
HinP1I GCGC 3 cut(s) 16, 1813, 2230
HincII GTYRAC 4 cut(s) 726, 1565, 1890, 2481
HindII GTYRAC 4 cut(s) 726, 1565, 1890, 2481
HindIII AAGCTT 2 cut(s) 568, 916
HpaI GTTAAC 1 cut(s) 2481
HpaII CCGG 3 cut(s) 397, 637, 1741
HphI GGTGA 7 cut(s) 1078, 1491, 1839, 2618, 2792, 2818, 3037
Hpy166II GTNNAC 6 cut(s) 152, 391, 726, 1565, 1890, 2481
Hpy8I GTNNAC 6 cut(s) 152, 391, 726, 1565, 1890, 2481
HpyCH4III ACNGT 8 cut(s) 250, 854, 959, 1301, 1384, 1784, 2007, 2236
HpyCH4IV ACGT 3 cut(s) 1955, 2677, 3186
HpySE526I ACGT 3 cut(s) 1955, 2677, 3186
Hsp92I GRCGYC 1 cut(s) 587
HspAI GCGC 3 cut(s) 16, 1813, 2230
Ksp22I TGATCA 1 cut(s) 1539
KspAI GTTAAC 1 cut(s) 2481
LmnI GCTCC 7 cut(s) 7, 467, 1106, 1367, 2111, 2269, 2270
LweI GCATC 8 cut(s) 345, 592, 670, 778, 952, 1932, 2683, 3183
MabI ACCWGGT 2 cut(s) 157, 2802
MaeI CTAG 6 cut(s) 516, 2070, 2078, 2324, 2463, 3021
MaeII ACGT 3 cut(s) 1955, 2677, 3186
MflI RGATCY 2 cut(s) 2281, 2407
MhlI GDGCHC 6 cut(s) 12, 583, 810, 975, 2386, 2927
MlsI TGGCCA 1 cut(s) 2091
MluNI TGGCCA 1 cut(s) 2091
MlyI GAGTC 2 cut(s) 264, 1418
MmeI TCCRAC 6 cut(s) 1030, 2309, 2711, 2785, 2821, 2849
Mox20I TGGCCA 1 cut(s) 2091
Mph1103I ATGCAT 2 cut(s) 546, 2032
MroXI GAANNNNTTC 2 cut(s) 105, 450
MscI TGGCCA 1 cut(s) 2091
MslI CAYNNNNRTG 1 cut(s) 2691
Msp20I TGGCCA 1 cut(s) 2091
MspA1I CMGCKG 1 cut(s) 89
MspCI CTTAAG 1 cut(s) 2012
MspI CCGG 3 cut(s) 397, 637, 1741
MspR9I CCNGG 9 cut(s) 159, 398, 637, 735, 811, 1742, 2255, 2268, 2804
Mva1269I GAATGC 3 cut(s) 544, 695, 864
MvaI CCWGG 6 cut(s) 159, 735, 811, 2255, 2268, 2804
MvnI CGCG 1 cut(s) 563
NciI CCSGG 3 cut(s) 398, 637, 1742
NcoI CCATGG 2 cut(s) 313, 3033
NdeI CATATG 1 cut(s) 1513
NlaIV GGNNCC 8 cut(s) 9, 1108, 1140, 1369, 1455, 1680, 2925, 2926
NmuCI GTSAC 6 cut(s) 1084, 1690, 1784, 2658, 2798, 3085
NsiI ATGCAT 2 cut(s) 546, 2032
NspI RCATGY 5 cut(s) 1571, 1698, 2030, 2690, 2935
NspV TTCGAA 1 cut(s) 597
PaeI GCATGC 2 cut(s) 2030, 2935
PagI TCATGA 1 cut(s) 1468
PasI CCCWGGG 1 cut(s) 2254
PciI ACATGT 1 cut(s) 1694
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PctI GAATGC 3 cut(s) 544, 695, 864
PdmI GAANNNNTTC 2 cut(s) 105, 450
PfeI GAWTC 9 cut(s) 608, 1154, 1272, 1766, 1859, 2369, 2393, 2504, 3094
PflFI GACNNNGTC 1 cut(s) 2132
PflMI CCANNNNNTGG 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 2266
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 2 cut(s) 264, 1417
PpsI GAGTC 2 cut(s) 264, 1417
PpuMI RGGWCCY 1 cut(s) 367
PscI ACATGT 1 cut(s) 1694
PshBI ATTAAT 1 cut(s) 663
PsiI TTATAA 2 cut(s) 117, 621
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 6 cut(s) 157, 733, 809, 2253, 2266, 2802
PspEI GGTNACC 1 cut(s) 2798
PspFI CCCAGC 3 cut(s) 85, 1450, 2927
PspGI CCWGG 6 cut(s) 157, 733, 809, 2253, 2266, 2802
PspN4I GGNNCC 8 cut(s) 9, 1108, 1140, 1369, 1455, 1680, 2925, 2926
PspOMI GGGCCC 1 cut(s) 2923
PspPI GGNCC 9 cut(s) 259, 367, 1003, 1139, 1454, 2066, 2785, 2923, 2924
PspPPI RGGWCCY 1 cut(s) 367
PstI CTGCAG 1 cut(s) 2701
PstNI CAGNNNCTG 6 cut(s) 143, 1788, 2047, 2267, 2372, 2912
PsuI RGATCY 2 cut(s) 2281, 2407
PsyI GACNNNGTC 1 cut(s) 2132
PvuI CGATCG 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 7 cut(s) 151, 686, 1431, 1870, 2568, 2600, 2706
RsaNI GTAC 7 cut(s) 150, 685, 1430, 1869, 2567, 2599, 2705
RseI CAYNNNNRTG 1 cut(s) 2691
Sau96I GGNCC 9 cut(s) 259, 367, 1003, 1139, 1454, 2066, 2785, 2923, 2924
SchI GAGTC 2 cut(s) 264, 1418
ScrFI CCNGG 9 cut(s) 159, 398, 637, 735, 811, 1742, 2255, 2268, 2804
SduI GDGCHC 6 cut(s) 12, 583, 810, 975, 2386, 2927
SexAI ACCWGGT 2 cut(s) 157, 2802
SfaNI GCATC 8 cut(s) 345, 592, 670, 778, 952, 1932, 2683, 3183
SfcI CTRYAG 3 cut(s) 2697, 2818, 3198
SfuI TTCGAA 1 cut(s) 597
SinI GGWCC 2 cut(s) 367, 1003
SmiMI CAYNNNNRTG 1 cut(s) 2691
SmlI CTYRAG 8 cut(s) 272, 549, 571, 759, 1127, 2012, 2411, 2654
SmoI CTYRAG 8 cut(s) 272, 549, 571, 759, 1127, 2012, 2411, 2654
SphI GCATGC 2 cut(s) 2030, 2935
SsiI CCGC 3 cut(s) 484, 1893, 2316
SspMI CTAG 6 cut(s) 516, 2070, 2078, 2324, 2463, 3021
StyD4I CCNGG 9 cut(s) 157, 396, 635, 733, 809, 1740, 2253, 2266, 2802
StyI CCWWGG 6 cut(s) 313, 1134, 1974, 2092, 3033, 3105
TaaI ACNGT 8 cut(s) 250, 854, 959, 1301, 1384, 1784, 2007, 2236
TaiI ACGT 3 cut(s) 1958, 2680, 3189
TaqI TCGA 7 cut(s) 180, 184, 597, 1098, 1275, 1296, 3070
TatI WGTACW 2 cut(s) 149, 1868
TfiI GAWTC 9 cut(s) 608, 1154, 1272, 1766, 1859, 2369, 2393, 2504, 3094
TscAI CASTG 7 cut(s) 255, 305, 859, 1123, 1420, 1789, 3094
TseFI GTSAC 6 cut(s) 1084, 1690, 1784, 2658, 2798, 3085
Tsp45I GTSAC 6 cut(s) 1084, 1690, 1784, 2658, 2798, 3085
TspGWI ACGGA 6 cut(s) 572, 1671, 2433, 2498, 2714, 2782
TspRI CASTG 7 cut(s) 255, 305, 859, 1123, 1420, 1789, 3094
Tth111I GACNNNGTC 1 cut(s) 2132
Van91I CCANNNNNTGG 1 cut(s) 161
Vha464I CTTAAG 1 cut(s) 2012
VpaK11BI GGWCC 2 cut(s) 367, 1003
VspI ATTAAT 1 cut(s) 663
XbaI TCTAGA 1 cut(s) 2077
XceI RCATGY 5 cut(s) 1571, 1698, 2030, 2690, 2935
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XmnI GAANNNNTTC 2 cut(s) 105, 450
XspI CTAG 6 cut(s) 516, 2070, 2078, 2324, 2463, 3021
Zsp2I ATGCAT 2 cut(s) 546, 2032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.