Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

26971910 .. 26972348

Gene Structure 439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAAATTCCGCTGCAGGTAGTTTTGTTATACGTGATGTTCATGGCAAGCCCCTGGGTTGGTACTTCTACAGCTCCTTTAGCAGAAGCCATTGCTCTATGTAACAGACTCGTCTGTGCTTTAGAACGAGGACACAACAGAATTGAAGTTGAGGGCGACTCCAAACTTATAATAGATGCTGTCAATAAAGTTATACACCCCCCCTGGCGATTAATCAAAATTGTTCAAGATATCCAGGACATTGCTACAAGATTCAACTCAATCTCCTTTCGACATATTTTTCGGGAAGCAAATTTTGTAGCTGATGCCTTAGCTAATCTAGGCCACAAATGTACTAGTGGAAATATGTGGACAAATAGAGTCCGATCCCTTTGGAGGCTCAAGAGCCTTAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

132

Amino Acids

14.97

Weight (kDa)

9.3

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	15 - 107	2.6e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	7
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	6, 292
AfaI	GTAC	2 cut(s)	64, 334
AfiI	CCNNNNNNNGG	2 cut(s)	59, 375
AgsI	TTSAA	3 cut(s)	146, 227, 256
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	3 cut(s)	53, 203, 234
AluBI	AGCT	3 cut(s)	74, 302, 314
AluI	AGCT	3 cut(s)	74, 302, 314
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	2 cut(s)	6, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AseI	ATTAAT	1 cut(s)	212
BciT130I	CCWGG	3 cut(s)	55, 205, 236
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	2 cut(s)	320, 336
BfmI	CTRYAG	2 cut(s)	14, 69
BfuAI	ACCTGC	1 cut(s)	7
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	3 cut(s)	55, 205, 236
BmrFI	CCNGG	3 cut(s)	55, 205, 236
BmsI	GCATC	2 cut(s)	166, 295
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	53, 54, 203
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 375
Bse3DI	GCAATG	2 cut(s)	90, 240
BseBI	CCWGG	3 cut(s)	55, 205, 236
BseDI	CCNNGG	3 cut(s)	53, 54, 203
BseLI	CCNNNNNNNGG	2 cut(s)	59, 375
BseMI	GCAATG	2 cut(s)	90, 240
BshFI	GGCC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	59, 375
BsnI	GGCC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	365
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	90, 240
BssECI	CCNNGG	3 cut(s)	53, 54, 203
BssMI	GATC	1 cut(s)	365
Bst2UI	CCWGG	3 cut(s)	55, 205, 236
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	3 cut(s)	55, 205, 236
BstSCI	CCNGG	3 cut(s)	53, 203, 234
BstSFI	CTRYAG	2 cut(s)	14, 69
BsuRI	GGCC	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	63, 333
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	8 cut(s)	51, 74, 89, 302, 314, 324, 379, 387
CviKI_1	RGCY	8 cut(s)	51, 74, 89, 302, 314, 324, 379, 387
CviQI	GTAC	2 cut(s)	63, 333
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	232
EcoRII	CCWGG	3 cut(s)	53, 203, 234
EcoRV	GATATC	1 cut(s)	232
FaeI	CATG	1 cut(s)	46
FaiI	YATR	7 cut(s)	31, 44, 100, 170, 194, 276, 347
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	2 cut(s)	320, 336
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	4 cut(s)	108, 158, 252, 360
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	3 cut(s)	227, 284, 382
Hpy8I	GTNNAC	1 cut(s)	351
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	365
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	2, 40, 67, 190, 217, 221, 248
LweI	GCATC	2 cut(s)	166, 295
MaeI	CTAG	2 cut(s)	320, 336
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	367
MboI	GATC	1 cut(s)	365
MluCI	AATT	4 cut(s)	6, 141, 219, 292
MlyI	GAGTC	3 cut(s)	102, 152, 369
MnlI	CCTC	3 cut(s)	122, 145, 369
MseI	TTAA	2 cut(s)	212, 390
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	3 cut(s)	55, 205, 236
MvaI	CCWGG	3 cut(s)	55, 205, 236
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	1 cut(s)	46
PasI	CCCWGGG	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	252
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	3 cut(s)	102, 152, 368
PpsI	GAGTC	3 cut(s)	102, 152, 368
Ppu21I	YACGTR	1 cut(s)	34
PshBI	ATTAAT	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	170
Psp6I	CCWGG	3 cut(s)	53, 203, 234
PspGI	CCWGG	3 cut(s)	53, 203, 234
PstI	CTGCAG	1 cut(s)	18
RsaI	GTAC	2 cut(s)	64, 334
RsaNI	GTAC	2 cut(s)	63, 333
SaqAI	TTAA	2 cut(s)	212, 390
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	365
SchI	GAGTC	3 cut(s)	102, 152, 369
ScrFI	CCNGG	3 cut(s)	55, 205, 236
SetI	ASST	5 cut(s)	21, 36, 76, 304, 316
SfaNI	GCATC	2 cut(s)	166, 295
SfcI	CTRYAG	2 cut(s)	14, 69
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	4 cut(s)	6, 141, 219, 292
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	320, 336
StyD4I	CCNGG	3 cut(s)	53, 203, 234
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	271
TasI	AATT	4 cut(s)	6, 141, 219, 292
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	212, 390
Tru9I	TTAA	2 cut(s)	212, 390
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	212
XapI	RAATTY	2 cut(s)	6, 292
XspI	CTAG	2 cut(s)	320, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.