Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000170.1

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

711 .. 1995

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000170.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggcttggcgtgggattctggaaagtagagacatcattactcaagctggaatctcttctcatggttttactacttttgatgattggttttcttcttggtttgacactggccatgaaaaaacttcgactgaaaattgtgttctgatttgctggaagatttgggaggcaagaaataaccttgtctttcggcagaaagtctcctcccctgcctcagttgtcttctcttctgcggcaactgctaaagatttcagatgcgccaacttgatgtcaagttcagctacttctccagattcatcttcccctcctgttcttcgagctcagctttcagacatcaaatggaaacctcctcctcctggtttctgtaagttaaactttgatggttccgtcattgggaacaagagtgctgctgcgggttttgtccttcgagatgagcatggcaaccctatttttgctaggtccagaaacattgggatctcttctgtccctgctgcggaaggaaatgctcttcgagatggcccctatcatgcctttctcctcagatgtaggaagattattgttgaaggtgattccaagcttttgattaacgtgtcaataacaagtgtgccactctgtcgaggcttcatactcttgccagagatatcgttaacttgtctagcaactttgaacacattgtctttgcgtacatcccccgggaggctaacttcatggttgatgcgatggcgaatcaaggtcaccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

246

Amino Acids

27.07

Weight (kDa)

9.47

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	230, 410, 491
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	109
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	4 cut(s)	353, 390, 490, 693
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	2 cut(s)	560, 664
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	5 cut(s)	47, 278, 317, 322, 574
AluI	AGCT	5 cut(s)	47, 278, 317, 322, 574
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	24, 202
AlwI	GGATC	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	2 cut(s)	109, 514
ApeKI	GCWGC	3 cut(s)	404, 407, 488
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	456, 515
AsuC2I	CCSGG	2 cut(s)	690, 691
AsuHPI	GGTGA	2 cut(s)	575, 724
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	456
BalI	TGGCCA	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	3 cut(s)	391, 394, 475
BccI	CCATC	3 cut(s)	371, 506, 711
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	690, 691
BcoDI	GTCTC	2 cut(s)	24, 202
BfaI	CTAG	2 cut(s)	453, 653
BisI	GCNGC	4 cut(s)	231, 405, 408, 489
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	4 cut(s)	232, 406, 409, 490
Bme1390I	CCNGG	3 cut(s)	354, 690, 691
Bme18I	GGWCC	1 cut(s)	456
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	456, 515
BmiI	GGNNCC	2 cut(s)	382, 517
BmrFI	CCNGG	3 cut(s)	354, 690, 691
BmsI	GCATC	2 cut(s)	242, 702
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	2 cut(s)	690, 691
BsaJI	CCNNGG	2 cut(s)	688, 689
Bsc4I	CCNNNNNNNGG	4 cut(s)	353, 390, 490, 693
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	688, 689
BseGI	GGATG	1 cut(s)	683
BseLI	CCNNNNNNNGG	4 cut(s)	353, 390, 490, 693
BseMII	CTCAG	3 cut(s)	225, 332, 550
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	4 cut(s)	190, 336, 339, 524
BseXI	GCAGC	3 cut(s)	391, 394, 475
BshFI	GGCC	2 cut(s)	111, 516
BsiHKAI	GWGCWC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	4 cut(s)	353, 390, 490, 693
BsmAI	GTCTC	2 cut(s)	24, 202
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	2 cut(s)	111, 516
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	471
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	3 cut(s)	230, 410, 491
BspANI	GGCC	2 cut(s)	111, 516
BspCNI	CTCAG	3 cut(s)	224, 331, 549
BspLI	GGNNCC	2 cut(s)	382, 517
BspPI	GGATC	1 cut(s)	479
BspQI	GCTCTTC	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	688, 689
BssMI	GATC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	354
Bst6I	CTCTTC	4 cut(s)	61, 229, 481, 510
BstDEI	CTNAG	3 cut(s)	211, 318, 536
BstEII	GGTNACC	1 cut(s)	730
BstF5I	GGATG	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	474
BstMAI	GTCTC	2 cut(s)	24, 202
BstMBI	GATC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	730
BstSCI	CCNGG	3 cut(s)	352, 688, 689
BstV1I	GCAGC	3 cut(s)	391, 394, 475
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	111, 516
BtgZI	GCGATG	1 cut(s)	730
BtsCI	GGATG	1 cut(s)	683
BtsIMutI	CAGTG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	456, 515
Cfr9I	CCCGGG	1 cut(s)	689
Csp6I	GTAC	1 cut(s)	681
CviAII	CATG	5 cut(s)	62, 113, 434, 524, 705
CviQI	GTAC	1 cut(s)	681
DdeI	CTNAG	3 cut(s)	211, 318, 536
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	4 cut(s)	61, 229, 481, 510
EarI	CTCTTC	4 cut(s)	61, 229, 481, 510
Ecl136II	GAGCTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	689
Eco91I	GGTNACC	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	319
FaeI	CATG	5 cut(s)	65, 116, 437, 527, 708
FaiI	YATR	6 cut(s)	63, 114, 435, 525, 623, 706
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	5 cut(s)	61, 112, 433, 523, 704
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	231, 405, 408, 489
FokI	GGATG	1 cut(s)	670
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	4 cut(s)	231, 405, 408, 489
FspBI	CTAG	2 cut(s)	453, 653
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	4 cut(s)	231, 405, 408, 489
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	111, 516
HapII	CCGG	1 cut(s)	690
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	5 cut(s)	65, 116, 437, 527, 708
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	5 cut(s)	16, 51, 290, 566, 723
HpaI	GTTAAC	1 cut(s)	645
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	2 cut(s)	575, 724
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	4 cut(s)	144, 251, 328, 539
Hpy188III	TCNNGA	5 cut(s)	20, 287, 425, 459, 509
Hpy8I	GTNNAC	1 cut(s)	645
HpyAV	CCTTC	3 cut(s)	431, 488, 554
HpyCH4IV	ACGT	1 cut(s)	585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	3 cut(s)	211, 318, 536
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	5 cut(s)	65, 116, 437, 527, 708
HspAI	GCGC	1 cut(s)	255
KspAI	GTTAAC	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	471
LguI	GCTCTTC	1 cut(s)	510
Lsp1109I	GCAGC	3 cut(s)	391, 394, 475
LweI	GCATC	2 cut(s)	242, 702
MaeI	CTAG	2 cut(s)	453, 653
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	133
MluNI	TGGCCA	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	3 cut(s)	368, 582, 644
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	3 cut(s)	354, 690, 691
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	2 cut(s)	690, 691
NdeII	GATC	1 cut(s)	471
NlaIII	CATG	5 cut(s)	65, 116, 437, 527, 708
NlaIV	GGNNCC	2 cut(s)	382, 517
NmuCI	GTSAC	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	5 cut(s)	16, 51, 290, 566, 723
PkrI	GCNGC	4 cut(s)	232, 406, 409, 490
Psp124BI	GAGCTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	382, 517
PspPI	GGNCC	2 cut(s)	456, 515
PsuI	RGATCY	1 cut(s)	471
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
SacI	GAGCTC	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	368, 582, 644
SatI	GCNGC	4 cut(s)	231, 405, 408, 489
Sau3AI	GATC	1 cut(s)	471
Sau96I	GGNCC	2 cut(s)	456, 515
ScrFI	CCNGG	3 cut(s)	354, 690, 691
SduI	GDGCHC	1 cut(s)	319
SfaNI	GCATC	2 cut(s)	242, 702
SinI	GGWCC	1 cut(s)	456
SmaI	CCCGGG	1 cut(s)	691
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	3 cut(s)	230, 410, 491
SspMI	CTAG	2 cut(s)	453, 653
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	3 cut(s)	352, 688, 689
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	5 cut(s)	125, 313, 424, 508, 613
TasI	AATT	1 cut(s)	133
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	5 cut(s)	16, 51, 290, 566, 723
Tru1I	TTAA	3 cut(s)	368, 582, 644
Tru9I	TTAA	3 cut(s)	368, 582, 644
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	3 cut(s)	404, 407, 488
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	4 cut(s)	129, 282, 610, 693
TspGWI	ACGGA	1 cut(s)	373
TspMI	CCCGGG	1 cut(s)	689
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	456
XmaI	CCCGGG	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	2 cut(s)	453, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.