Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

21156160 .. 21157067

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17203.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCCTCCGATGACATGAGTAGCTATGCGGCAGGCGGTTTCATTTTTAGAAACCCTCTTGGAAGCCCCCTTGCTGCAGCTGCTTTCAACTTTGGTTCAACGACTGTTCCTGTAGCTAAAGCCCTAGCCCTCCGTAACGGCCTCATTGATGCAAAAAGAAGAGGCTTTAAAAAGGTGGAGGTTGAAGGCGACTCCAAGCTCGTAATTAATGTCATTAATGGCGTCTCTGCACCCCCGTGGAGATTGCTTAAGCTTTGTCAAGATATTAAATCCCTTCGAAGCTCGTTCGAGTTCATCAGCTTCAAACATGTTTTCAAGGAGGCGAACTTTGTGGCTTACGCCATTGCAAACTTTGATCATAGGTTAGATAATTCGTGTGTTTGGGAGGAGTGTGTTCCTCCGGATGCAGTTTTAGCTTTAACCTTTGACTCTGTAAACTCATGGTGCACTAGAGGCACCTCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

156

Amino Acids

16.95

Weight (kDa)

8.39

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	7 - 118	5.9e-19	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	2 cut(s)	29, 36
AcyI	GRCGYC	1 cut(s)	222
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	5 cut(s)	88, 99, 185, 304, 316
AleI	CACNNNNGTG	1 cut(s)	235
AluBI	AGCT	8 cut(s)	24, 80, 116, 199, 253, 282, 300, 416
AluI	AGCT	8 cut(s)	24, 80, 116, 199, 253, 282, 300, 416
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	445
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	1 cut(s)	139
ApaLI	GTGCAC	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	74, 77, 80
AseI	ATTAAT	2 cut(s)	207, 216
AsuII	TTCGAA	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	449
BbvI	GCAGC	3 cut(s)	61, 67, 89
BceAI	ACGGC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	2 cut(s)	125, 450
BfmI	CTRYAG	2 cut(s)	75, 111
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	4 cut(s)	30, 75, 78, 81
BlsI	GCNGC	4 cut(s)	31, 76, 79, 82
BmiI	GGNNCC	1 cut(s)	457
BmsI	GCATC	2 cut(s)	139, 394
Bpu14I	TTCGAA	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	61, 67, 89
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	229
BsmBI	CGTCTC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	2 cut(s)	29, 36
BspANI	GGCC	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	355
BssNI	GRCGYC	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 413, 453
BstNSI	RCATGY	1 cut(s)	311
BstSFI	CTRYAG	2 cut(s)	75, 111
BstSLI	GKGCMC	1 cut(s)	449
BstV1I	GCAGC	3 cut(s)	61, 67, 89
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	34
CseI	GACGC	1 cut(s)	211
CviAII	CATG	3 cut(s)	16, 308, 441
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
DraI	TTTAAA	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	3 cut(s)	19, 311, 444
FaiI	YATR	5 cut(s)	17, 27, 309, 360, 442
FatI	CATG	3 cut(s)	15, 307, 440
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	30, 75, 78, 81
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	30, 75, 78, 81
FspBI	CTAG	2 cut(s)	125, 450
GluI	GCNGC	4 cut(s)	30, 75, 78, 81
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	19, 311, 444
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	191, 428
HpaII	CCGG	1 cut(s)	401
Hpy166II	GTNNAC	2 cut(s)	436, 447
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	260, 401
Hpy8I	GTNNAC	2 cut(s)	436, 447
HpyAV	CCTTC	2 cut(s)	179, 284
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	6 cut(s)	77, 152, 230, 347, 407, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 413, 453
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	19, 311, 444
Kpn2I	TCCGGA	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	355
LpnPI	CCDG	3 cut(s)	18, 123, 414
Lsp1109I	GCAGC	3 cut(s)	61, 67, 89
LweI	GCATC	2 cut(s)	139, 394
MaeI	CTAG	2 cut(s)	125, 450
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	2 cut(s)	204, 370
MlyI	GAGTC	2 cut(s)	185, 422
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	6 cut(s)	168, 207, 216, 249, 267, 419
MslI	CAYNNNNRTG	1 cut(s)	235
MspA1I	CMGCKG	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	80, 413, 453
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	19, 311, 444
NlaIV	GGNNCC	1 cut(s)	457
NspI	RCATGY	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	235
PciI	ACATGT	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	31, 76, 79, 82
PleI	GAGTC	2 cut(s)	185, 422
PpsI	GAGTC	2 cut(s)	185, 422
PscI	ACATGT	1 cut(s)	307
PshBI	ATTAAT	2 cut(s)	207, 216
PspN4I	GGNNCC	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	235
SaqAI	TTAA	6 cut(s)	168, 207, 216, 249, 267, 419
SatI	GCNGC	4 cut(s)	30, 75, 78, 81
Sau3AI	GATC	1 cut(s)	355
SchI	GAGTC	2 cut(s)	185, 422
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	139, 394
SfcI	CTRYAG	2 cut(s)	75, 111
SfuI	TTCGAA	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	204, 370
SsiI	CCGC	2 cut(s)	29, 36
SspMI	CTAG	2 cut(s)	125, 450
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	277, 288
TasI	AATT	2 cut(s)	204, 370
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	6 cut(s)	168, 207, 216, 249, 267, 419
Tru9I	TTAA	6 cut(s)	168, 207, 216, 249, 267, 419
TseI	GCWGC	3 cut(s)	74, 77, 80
TspDTI	ATGAA	2 cut(s)	31, 283
TspGWI	ACGGA	1 cut(s)	122
Vha464I	CTTAAG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	445
VspI	ATTAAT	2 cut(s)	207, 216
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	2 cut(s)	125, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.