Rorug03G0264000

Reverse transcriptase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
25615553 .. 25616801
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0264000.1

Sequence Viewer

Length: 399 bp
ATGTCAAATTATGACGGCAATGTGGACTTTAACTATGAAGATATTGACTTGGACAATGTAAACCAATCACAGCTTCACAACAATGTGGCTTTTAATGATAGTGAAACACAAGATGTAGGAGGTTTGTATAATGCTCAAGTTGAAGTCAATGGAGGCACAAATATGGGAGCGAATCTAAGTAGTACTCAACCTAAAGTCAATGAAAATGTAGCAGCCAATTGGAAAGAGTTTGTTGAATATTTGGATGAGGAAGATACTCAGACGAAGGCTACCATAAATGTTAGTAATCGTTCTCAAAGGATTATGCATCATAGCACAGGAACAAGGACTTTTCCGGCTGTTGTACATGAATGGCAAGTTGAAAATGGAGTTAACACATGGATATCAGTGGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

14.75

Weight (kDa)

4.31

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 184, 345
AgsI TTSAA 3 cut(s) 143, 236, 362
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 31
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmcAI AGTACT 1 cut(s) 184
BmsI GCATC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 25
BseGI GGATG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 335
Bsp1407I TGTACA 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 343
BstDEI CTNAG 2 cut(s) 176, 258
BstF5I GGATG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 393
Csp6I GTAC 2 cut(s) 183, 344
CviAII CATG 2 cut(s) 347, 378
CviJI RGCY 5 cut(s) 73, 89, 215, 269, 338
CviKI_1 RGCY 5 cut(s) 73, 89, 215, 269, 338
CviQI GTAC 2 cut(s) 183, 344
DdeI CTNAG 2 cut(s) 176, 258
Eco32I GATATC 1 cut(s) 384
EcoRV GATATC 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 309
FaeI CATG 2 cut(s) 350, 381
FaiI YATR 9 cut(s) 12, 36, 129, 164, 275, 305, 312, 348, 379
FatI CATG 2 cut(s) 346, 377
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
HapII CCGG 1 cut(s) 335
Hin1II CATG 2 cut(s) 350, 381
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 1 cut(s) 172
HpaI GTTAAC 1 cut(s) 373
HpaII CCGG 1 cut(s) 335
Hpy166II GTNNAC 3 cut(s) 25, 61, 373
Hpy188I TCNGA 1 cut(s) 261
Hpy8I GTNNAC 3 cut(s) 25, 61, 373
HpyAV CCTTC 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 307
HpyF3I CTNAG 2 cut(s) 176, 258
Hsp92II CATG 2 cut(s) 350, 381
KspAI GTTAAC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 2 cut(s) 303, 348
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 50, 263
MfeI CAATTG 1 cut(s) 217
MluCI AATT 3 cut(s) 7, 217, 394
MnlI CCTC 3 cut(s) 113, 146, 241
Mph1103I ATGCAT 1 cut(s) 309
MseI TTAA 3 cut(s) 30, 93, 372
MslI CAYNNNNRTG 2 cut(s) 81, 161
MspI CCGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 217
NlaIII CATG 2 cut(s) 350, 381
NsiI ATGCAT 1 cut(s) 309
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 214
RsaI GTAC 2 cut(s) 184, 345
RsaNI GTAC 2 cut(s) 183, 344
RseI CAYNNNNRTG 2 cut(s) 81, 161
SaqAI TTAA 3 cut(s) 30, 93, 372
SatI GCNGC 1 cut(s) 213
ScaI AGTACT 1 cut(s) 184
SetI ASST 3 cut(s) 75, 124, 193
SfaNI GCATC 1 cut(s) 316
SgeI CNNG 9 cut(s) 61, 122, 149, 330, 336, 347, 359, 368, 390
SmiMI CAYNNNNRTG 2 cut(s) 81, 161
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 3 cut(s) 7, 217, 394
SspI AATATT 1 cut(s) 239
TasI AATT 3 cut(s) 7, 217, 394
TatI WGTACW 2 cut(s) 182, 343
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 3 cut(s) 30, 93, 372
Tru9I TTAA 3 cut(s) 30, 93, 372
TscAI CASTG 1 cut(s) 393
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 51, 216, 363
TspRI CASTG 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.