Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

9597059 .. 9599471

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16792.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTATCAGATATGGACTACGGTATGCAGATAGTGGACTACGGTATGCAGATAGGGTTAATTAACTTTGGGAGCCGTGTGGGGTTTGTTAGAGACTTGCAAGAGCAAAGGTTTGAAGAATGTTTGTTCTTCCTGCAGATTGAAGAACTCGATCGGCAACAGATCCAGGGAGAGCAGCTGCAGTTTGCAATCATGGGTCTTGGTGATTCTAGTTCAACTAGGAATTTGAATACTCTCGGAACAGACTCTGAAATGATCAGGTGGTCACCACCCCTTATTGATAGGGTTGAAATCAACTTTGATTGCTCAATCTGGAGGAACTCTGAGGAGGATTCAATTACCACAATCTCAGTTGCAGAAGCCCTTTCACCCCGAAACAACCTTATTTGTGCCAAGGAGAGAGACTTGTTCAGAGTGGAGGTTGAAGGAGACTCGAAGCTTGTCATCGATGCAGTTAATGGCATTGTTGCTATTCCTTGGAGGATTCTTAAGCTAGTTCAAGAAATTAGATTTTTGAGAAACTTTTTTGATTATATTAGTTTCAAGCATATTTTTAGAGAGACCAATTTTGTAGCTAATGCTGTTGTAAATTTTGGTCACAAAGTAGGAGATGTTCGTTTTTGGGAGGAGAGTGTTCCTCTGAAAGCTAGTCTAGAGCTGTCTTTTGACTCTGTAAACTGCGGGTGCATTAGAGGCACCTCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

236

Amino Acids

26.92

Weight (kDa)

4.68

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	112 - 198	3.3e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	695
AciI	CCGC	1 cut(s)	681
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	223, 589
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	9 cut(s)	116, 143, 216, 229, 290, 336, 425, 500, 544
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	6 cut(s)	178, 439, 493, 575, 647, 658
AluI	AGCT	6 cut(s)	178, 439, 493, 575, 647, 658
Alw26I	GTCTC	4 cut(s)	87, 396, 423, 554
AlwI	GGATC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	175, 178
ApoI	RAATTY	2 cut(s)	223, 589
AsuHPI	GGTGA	3 cut(s)	215, 258, 360
BanI	GGYRCC	1 cut(s)	695
BbvI	GCAGC	2 cut(s)	165, 187
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	4 cut(s)	87, 396, 423, 554
BfaI	CTAG	5 cut(s)	210, 219, 494, 648, 653
BfmI	CTRYAG	2 cut(s)	134, 179
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	2 cut(s)	176, 179
BlsI	GCNGC	2 cut(s)	177, 180
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	74, 697
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BpmI	CTGGAG	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	166, 393, 476
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	3 cut(s)	166, 393, 476
BseMII	CTCAG	2 cut(s)	315, 363
BseRI	GAGGAG	2 cut(s)	341, 641
BseXI	GCAGC	2 cut(s)	165, 187
Bsh1285I	CGRYCG	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	695
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	154
BsmAI	GTCTC	4 cut(s)	87, 396, 423, 554
Bso31I	GGTCTC	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	151, 162, 255
BspACI	CCGC	1 cut(s)	681
BspCNI	CTCAG	2 cut(s)	316, 362
BspDI	ATCGAT	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	74, 697
BspMAI	CTGCAG	2 cut(s)	138, 183
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	695
BspTI	CTTAAG	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	554
BssECI	CCNNGG	3 cut(s)	166, 393, 476
BssMI	GATC	3 cut(s)	151, 162, 255
BssT1I	CCWWGG	2 cut(s)	393, 476
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	23, 44
BstAFI	CTTAAG	1 cut(s)	488
BstDEI	CTNAG	2 cut(s)	324, 349
BstEII	GGTNACC	1 cut(s)	264
BstKTI	GATC	3 cut(s)	154, 165, 258
BstMAI	GTCTC	4 cut(s)	87, 396, 423, 554
BstMBI	GATC	3 cut(s)	151, 162, 255
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	693
BstNI	CCWGG	1 cut(s)	167
BstPI	GGTNACC	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	2 cut(s)	134, 179
BstV1I	GCAGC	2 cut(s)	165, 187
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	447
BsuTUI	ATCGAT	1 cut(s)	447
CaiI	CAGNNNCTG	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	447
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	8 cut(s)	75, 178, 362, 439, 493, 575, 647, 658
CviKI_1	RGCY	8 cut(s)	75, 178, 362, 439, 493, 575, 647, 658
DdeI	CTNAG	2 cut(s)	324, 349
DpnI	GATC	3 cut(s)	153, 164, 257
DpnII	GATC	3 cut(s)	151, 162, 255
Eco130I	CCWWGG	2 cut(s)	393, 476
Eco31I	GGTCTC	1 cut(s)	554
Eco91I	GGTNACC	1 cut(s)	264
EcoO65I	GGTNACC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	393, 476
ErhI	CCWWGG	2 cut(s)	393, 476
FaeI	CATG	1 cut(s)	196
FaiI	YATR	6 cut(s)	14, 26, 47, 194, 534, 549
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	674
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	176, 179
Fsp4HI	GCNGC	2 cut(s)	176, 179
FspBI	CTAG	5 cut(s)	210, 219, 494, 648, 653
GluI	GCNGC	2 cut(s)	176, 179
GsuI	CTGGAG	1 cut(s)	334
Hin1II	CATG	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	6 cut(s)	206, 245, 332, 431, 484, 668
HphI	GGTGA	3 cut(s)	215, 258, 360
Hpy166II	GTNNAC	2 cut(s)	37, 676
Hpy188I	TCNGA	6 cut(s)	10, 239, 250, 325, 413, 642
Hpy188III	TCNNGA	3 cut(s)	313, 500, 653
Hpy8I	GTNNAC	2 cut(s)	37, 676
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	2 cut(s)	23, 44
HpyCH4V	TGCA	9 cut(s)	28, 49, 100, 136, 181, 188, 356, 452, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	693
HpyF3I	CTNAG	2 cut(s)	324, 349
Hsp92II	CATG	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	151, 162, 255
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	5 cut(s)	146, 152, 179, 244, 298
Lsp1109I	GCAGC	2 cut(s)	165, 187
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	5 cut(s)	210, 219, 494, 648, 653
MaeIII	GTNAC	2 cut(s)	264, 596
MalI	GATC	3 cut(s)	153, 164, 257
MboI	GATC	3 cut(s)	151, 162, 255
MboII	GAAGA	3 cut(s)	121, 128, 155
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	6 cut(s)	60, 223, 336, 504, 565, 589
MlyI	GAGTC	3 cut(s)	239, 425, 662
MnlI	CCTC	8 cut(s)	309, 319, 322, 412, 474, 619, 648, 686
MseI	TTAA	5 cut(s)	59, 63, 456, 489, 706
MspA1I	CMGCKG	1 cut(s)	178
MspCI	CTTAAG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	693
NdeII	GATC	3 cut(s)	151, 162, 255
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	74, 697
NmuCI	GTSAC	2 cut(s)	264, 596
PacI	TTAATTAA	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	206, 332, 484
PkrI	GCNGC	2 cut(s)	177, 180
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	3 cut(s)	239, 425, 662
PpsI	GAGTC	3 cut(s)	239, 425, 662
Psp6I	CCWGG	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	74, 697
PsrI	GAACNNNNNNTAC	2 cut(s)	597, 629
PstI	CTGCAG	2 cut(s)	138, 183
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	162
PvuI	CGATCG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	178
SaqAI	TTAA	5 cut(s)	59, 63, 456, 489, 706
SatI	GCNGC	2 cut(s)	176, 179
Sau3AI	GATC	3 cut(s)	151, 162, 255
SchI	GAGTC	3 cut(s)	239, 425, 662
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	2 cut(s)	134, 179
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	6 cut(s)	60, 223, 336, 504, 565, 589
SsiI	CCGC	1 cut(s)	681
SspMI	CTAG	5 cut(s)	210, 219, 494, 648, 653
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	393, 476
TaaI	ACNGT	2 cut(s)	23, 44
TaqI	TCGA	3 cut(s)	150, 434, 447
TasI	AATT	6 cut(s)	60, 223, 336, 504, 565, 589
TfiI	GAWTC	3 cut(s)	206, 332, 484
Tru1I	TTAA	5 cut(s)	59, 63, 456, 489, 706
Tru9I	TTAA	5 cut(s)	59, 63, 456, 489, 706
TseFI	GTSAC	2 cut(s)	264, 596
TseI	GCWGC	2 cut(s)	175, 178
Tsp45I	GTSAC	2 cut(s)	264, 596
Vha464I	CTTAAG	1 cut(s)	488
XapI	RAATTY	2 cut(s)	223, 589
XbaI	TCTAGA	1 cut(s)	652
XspI	CTAG	5 cut(s)	210, 219, 494, 648, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.