Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

25857872 .. 25858257

Gene Structure 386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35301.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCCCTACAAATTGATATGCAAAGTTGCCTTCAACTCTGGTGTTGCTAGTGTTCCCCTTGCCGAAGCTCTTGCGCTAAGACATAGTCTAGTATGCACTAAAGAGAAAGGCTTGTCAAAGATTGAAGTAGAAGGTGATTCCAAGCTCGTCATTGACATTGCGAATGGAGTTTGTGATCCCCCTTGGAGGCATATGAAGATCTTCCAAGATATCAAGTCATTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.25

Weight (kDa)

8.52

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	13 - 59	4.5e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	34, 125
AluBI	AGCT	2 cut(s)	68, 145
AluI	AGCT	2 cut(s)	68, 145
AlwI	GGATC	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BfaI	CTAG	2 cut(s)	48, 89
BglII	AGATCT	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	175, 198
BspPI	GGATC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	2 cut(s)	175, 198
BssT1I	CCWWGG	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	178, 201
BstMBI	GATC	2 cut(s)	175, 198
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
CfoI	GCGC	1 cut(s)	76
CviJI	RGCY	3 cut(s)	68, 111, 145
CviKI_1	RGCY	3 cut(s)	68, 111, 145
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	177, 200
DpnII	GATC	2 cut(s)	175, 198
Eco130I	CCWWGG	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FaiI	YATR	5 cut(s)	19, 84, 94, 192, 194
FauNDI	CATATG	1 cut(s)	192
FspBI	CTAG	2 cut(s)	48, 89
GlaI	GCGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	40, 125
HpyCH4V	TGCA	2 cut(s)	21, 96
HpyF3I	CTNAG	1 cut(s)	77
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	175, 198
LpnPI	CCDG	1 cut(s)	24
MaeI	CTAG	2 cut(s)	48, 89
MalI	GATC	2 cut(s)	177, 200
MboI	GATC	2 cut(s)	175, 198
MboII	GAAGA	2 cut(s)	193, 208
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	1 cut(s)	11
MnlI	CCTC	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	200
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	2 cut(s)	175, 198
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	198
PsyI	GACNNNGTC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	175, 198
SetI	ASST	3 cut(s)	70, 136, 147
Sse9I	AATT	1 cut(s)	11
SspMI	CTAG	2 cut(s)	48, 89
StyI	CCWWGG	1 cut(s)	182
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	209
Tth111I	GACNNNGTC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	2 cut(s)	48, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.