Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002322.1

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

253379 .. 254496

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002322.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgcataacaacagagactcagctgttagtggtttcgttattagagaccatgatggaagaccagttattgctaccaccaagtatgttgacaactttactacccttgttgcagaagctactgcacttaggaatagtctgattgtggccaaagacaaaggttttacaagagttgaagttgaaggagacttgaagctagttattgatgcagttaatgggctagtaaccccaaatccaatccccatcccttctgtcacagttaggattctggtgattcgaattctagattggttctcccgaatggccttcttatctccctcattaatggctctaagccgggacggctcctcgcttgaggacgacgccgttttgtcctccaccagggcttttgtgcaagatgccatgctgcaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

137

Amino Acids

15.03

Weight (kDa)

5.59

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	3 cut(s)	173, 179, 190
AjnI	CCWGG	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	268, 300
AluBI	AGCT	3 cut(s)	23, 116, 193
AluI	AGCT	3 cut(s)	23, 116, 193
Alw26I	GTCTC	3 cut(s)	9, 39, 177
AoxI	GGCC	2 cut(s)	144, 300
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	276
AseI	ATTAAT	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	47, 248
BceAI	ACGGC	2 cut(s)	347, 355
BciT130I	CCWGG	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	9, 39, 177
BfaI	CTAG	4 cut(s)	194, 218, 281, 412
BglI	GCCNNNNNGGC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	2 cut(s)	335, 379
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	335, 379
BmsI	GCATC	2 cut(s)	193, 385
BpiI	GAAGAC	1 cut(s)	64
Bpu14I	TTCGAA	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	390
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	146, 302
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	3 cut(s)	9, 39, 177
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	146, 302
Bso31I	GGTCTC	1 cut(s)	39
Bsp119I	TTCGAA	1 cut(s)	274
BspANI	GGCC	2 cut(s)	146, 302
BspCNI	CTCAG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	378
BssNI	GRCGYC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	274
BstDEI	CTNAG	3 cut(s)	19, 125, 329
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	240
BstMAI	GTCTC	3 cut(s)	9, 39, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	333, 377
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	146, 302
BtsCI	GGATG	1 cut(s)	240
CseI	GACGC	1 cut(s)	368
CviAII	CATG	2 cut(s)	50, 400
DdeI	CTNAG	3 cut(s)	19, 125, 329
EaeI	YGGCCR	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	53, 403
FaiI	YATR	4 cut(s)	6, 51, 84, 401
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	49, 399
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	4 cut(s)	194, 218, 281, 412
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	146, 302
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	53, 403
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	3 cut(s)	17, 262, 271
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	281, 294
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	3 cut(s)	173, 255, 313
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	6 cut(s)	4, 110, 122, 206, 391, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	3 cut(s)	19, 125, 329
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	53, 403
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	5 cut(s)	75, 251, 347, 364, 391
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	193, 385
MaeI	CTAG	4 cut(s)	194, 218, 281, 412
MaeIII	GTNAC	2 cut(s)	220, 250
MboII	GAAGA	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	2 cut(s)	276, 407
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	4 cut(s)	325, 346, 355, 382
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	2 cut(s)	210, 320
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	335, 379
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	335
NlaIII	CATG	2 cut(s)	53, 403
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	262, 271
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PshBI	ATTAAT	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	210, 320
SatI	GCNGC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	335, 379
SetI	ASST	4 cut(s)	25, 118, 160, 195
SfaNI	GCATC	2 cut(s)	193, 385
SfuI	TTCGAA	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	276, 407
SspMI	CTAG	4 cut(s)	194, 218, 281, 412
StyD4I	CCNGG	2 cut(s)	333, 377
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	276, 407
TfiI	GAWTC	2 cut(s)	262, 271
Tru1I	TTAA	2 cut(s)	210, 320
Tru9I	TTAA	2 cut(s)	210, 320
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	250
VspI	ATTAAT	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	276
XbaI	TCTAGA	1 cut(s)	280
XspI	CTAG	4 cut(s)	194, 218, 281, 412
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.