Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

17609915 .. 17610654

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21141.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCAAGTAATATGAACACAAATATGATTAGGTGGACACCACCCCCTTCTAATTGGGTTAAAATAAACTTTGATGACTCTGTCCAAAACAAGGCTGCGGCTGGAGGTTTTGTTTTAAGATCTAATGATGGAAAACCTCTTGTTTCTGCTGCCTTCAACTCTGGTACTGCCAATGTTCCTCTTGCTGAAGCGCTGACGCTTAGAAACAACTTACTTTGTGCCAAGGAGAAAGGTGTGTTGAAGGTCGAAGTGGAGGGCGATTCAAAACTCATTATTGACATTGTGAATGGAGTTTGTGATCTCCCTTGGAGGCTTCTGAAGGTTGTTCAAGACATCAAGTTGCTAAGTTGTCACTTTGAGTCCATTAGGTTCAAGCATGTTTTTAGGGAGGCTAATTTTGTGGCCAATGCTTTGGCAAATCTAGGGCATAGAGTTCAGATTAGTAGGCTTTGGGTGGAGTGTGTTCCCCCAGAAGCCTCACTCGCTATTGCGTTTGATTCTGTAAACTCTAGGTGTCGTCGAGGCACCTCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.63

Weight (kDa)

9.12

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	27 - 141	2.4e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AciI	CCGC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	402
AcuI	CTGAAG	2 cut(s)	207, 338
AfaI	GTAC	1 cut(s)	166
AfeI	AGCGCT	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	5 cut(s)	157, 241, 264, 329, 373
Aor51HI	AGCGCT	1 cut(s)	192
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	2 cut(s)	95, 149
AspLEI	GCGC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	524
BbvI	GCAGC	2 cut(s)	82, 136
BccI	CCATC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	422, 510
BfoI	RGCGCY	1 cut(s)	194
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	3 cut(s)	96, 99, 150
BlsI	GCNGC	3 cut(s)	97, 100, 151
BmiI	GGNNCC	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	222, 305
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	222, 305
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	82, 136
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	91
BsnI	GGCC	1 cut(s)	404
Bsp143I	GATC	2 cut(s)	119, 298
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	524
BssECI	CCNNGG	2 cut(s)	222, 305
BssMI	GATC	2 cut(s)	119, 298
BssT1I	CCWWGG	2 cut(s)	222, 305
BstDEI	CTNAG	2 cut(s)	200, 344
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	122, 301
BstMBI	GATC	2 cut(s)	119, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	82, 136
BstX2I	RGATCY	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	404
CfoI	GCGC	1 cut(s)	193
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	7 cut(s)	95, 101, 313, 392, 404, 448, 476
CviKI_1	RGCY	7 cut(s)	95, 101, 313, 392, 404, 448, 476
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	200, 344
DpnI	GATC	2 cut(s)	121, 300
DpnII	GATC	2 cut(s)	119, 298
EaeI	YGGCCR	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	222, 305
Eco47III	AGCGCT	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	207, 338
EcoT14I	CCWWGG	2 cut(s)	222, 305
ErhI	CCWWGG	2 cut(s)	222, 305
FaeI	CATG	1 cut(s)	380
FaiI	YATR	4 cut(s)	14, 26, 378, 429
FatI	CATG	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	96, 99, 150
Fsp4HI	GCNGC	3 cut(s)	96, 99, 150
FspBI	CTAG	2 cut(s)	422, 510
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	3 cut(s)	96, 99, 150
GsuI	CTGGAG	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	404
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	4 cut(s)	77, 260, 359, 497
Hpy166II	GTNNAC	2 cut(s)	36, 505
Hpy188I	TCNGA	2 cut(s)	318, 438
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	2 cut(s)	36, 505
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	4 cut(s)	57, 163, 235, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	200, 344
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	2 cut(s)	119, 298
LpnPI	CCDG	3 cut(s)	87, 147, 483
Lsp1109I	GCAGC	2 cut(s)	82, 136
MaeI	CTAG	2 cut(s)	422, 510
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	2 cut(s)	121, 300
MboI	GATC	2 cut(s)	119, 298
MflI	RGATCY	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	2 cut(s)	52, 394
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	2 cut(s)	71, 368
MnlI	CCTC	8 cut(s)	98, 147, 189, 247, 303, 382, 487, 515
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	3 cut(s)	60, 116, 535
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	2 cut(s)	119, 298
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	260, 497
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	97, 100, 151
PleI	GAGTC	2 cut(s)	71, 367
PpsI	GAGTC	2 cut(s)	71, 367
PspN4I	GGNNCC	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	119
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	60, 116, 535
SatI	GCNGC	3 cut(s)	96, 99, 150
Sau3AI	GATC	2 cut(s)	119, 298
SchI	GAGTC	2 cut(s)	71, 368
SetI	ASST	9 cut(s)	35, 109, 139, 235, 246, 324, 371, 515, 530
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	52, 394
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	2 cut(s)	422, 510
StyI	CCWWGG	2 cut(s)	222, 305
TaqI	TCGA	2 cut(s)	246, 520
TasI	AATT	2 cut(s)	52, 394
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	260, 497
Tru1I	TTAA	3 cut(s)	60, 116, 535
Tru9I	TTAA	3 cut(s)	60, 116, 535
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	2 cut(s)	95, 149
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	80
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	2 cut(s)	422, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.