Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Forward (+)

64743478 .. 64745742

Gene Structure 2265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATCATGATGATGATGATGACATTTAAACATTCTCGATCAACAAAAACTTCAAACATTTCAACCACAATTAAGTGGTCTGCTCCTCCTAGTTCTTTTGTTAAAATTAATTTTGATGGTTCAGTTTGTAGAGATTCAGCTGCTAGTGGTTTTGTTATTAGAGACCATGATGGAAGACCAGTTATCGCTTCCACCAAGTATATTGGCAACTCTACTACCCCTGTTGCAGAAGCTACTGCTCTCAGGGATAGCCTGGTTGCAGCCAAAGACAAAGGTTTCACAAGAGTTGAAGTTGAAGGAGACTCGAAGCTGGTTATCGATGCAGTTAATGGAGGGGTGACCCCACCTTGGAGGCTGCTCAAATTAATTGAAGACATTAGAACTATTGCAACTTCCTTTTCTCAAATTTCCTTTAAACATATCTATAGGGAAGCAAACTTTGTAGCTGATGCCATTGCAAATTTAGGACATGGGGCTGCTTTTCCTATGTCTTGGAATGATAGGGTTCCTAGTGAGGCTTCTAGTGCCTTATTGTTTGACGTTGTAAACATTGGTTGCCCAAGAGGCTTCCTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

192

Amino Acids

20.87

Weight (kDa)

8.97

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	37 - 155	5.1e-26	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	405, 460
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	5 cut(s)	54, 63, 290, 296, 371
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	4 cut(s)	140, 233, 310, 446
AluI	AGCT	4 cut(s)	140, 233, 310, 446
Alw26I	GTCTC	2 cut(s)	156, 294
ApeKI	GCWGC	4 cut(s)	140, 260, 355, 476
ApoI	RAATTY	2 cut(s)	405, 460
AseI	ATTAAT	2 cut(s)	108, 365
AsuHPI	GGTGA	1 cut(s)	349
BbsI	GAAGAC	2 cut(s)	181, 378
BbvI	GCAGC	4 cut(s)	127, 272, 342, 463
BccI	CCATC	2 cut(s)	110, 164
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	156, 294
BfaI	CTAG	4 cut(s)	90, 144, 510, 522
BfmI	CTRYAG	1 cut(s)	424
BglI	GCCNNNNNGGC	1 cut(s)	564
BisI	GCNGC	4 cut(s)	141, 261, 356, 477
BlsI	GCNGC	4 cut(s)	142, 262, 357, 478
Bme1390I	CCNGG	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	310, 439
BpiI	GAAGAC	2 cut(s)	181, 378
Bsa29I	ATCGAT	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	4 cut(s)	127, 272, 342, 463
BshVI	ATCGAT	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	156, 294
Bso31I	GGTCTC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	3, 38
BspCNI	CTCAG	1 cut(s)	255
BspDI	ATCGAT	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	3, 38
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	6, 41
BstMAI	GTCTC	2 cut(s)	156, 294
BstMBI	GATC	2 cut(s)	3, 38
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 564
BstNI	CCWGG	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	4 cut(s)	127, 272, 342, 463
BstV2I	GAAGAC	2 cut(s)	181, 378
Bsu15I	ATCGAT	1 cut(s)	318
BsuTUI	ATCGAT	1 cut(s)	318
CciI	TCATGA	1 cut(s)	6
ClaI	ATCGAT	1 cut(s)	318
CviAII	CATG	3 cut(s)	7, 167, 470
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	5, 40
DpnII	GATC	2 cut(s)	3, 38
DraI	TTTAAA	2 cut(s)	28, 415
Eco130I	CCWWGG	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	156
Eco91I	GGTNACC	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	3 cut(s)	10, 170, 473
FaiI	YATR	7 cut(s)	8, 168, 201, 420, 426, 471, 488
FatI	CATG	3 cut(s)	6, 166, 469
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	141, 261, 356, 477
Fsp4HI	GCNGC	4 cut(s)	141, 261, 356, 477
FspBI	CTAG	4 cut(s)	90, 144, 510, 522
GluI	GCNGC	4 cut(s)	141, 261, 356, 477
Hin1II	CATG	3 cut(s)	10, 170, 473
HinfI	GANTC	2 cut(s)	134, 302
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188III	TCNNGA	2 cut(s)	7, 36
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	5 cut(s)	227, 260, 323, 389, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 564
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	10, 170, 473
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 38
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	192, 229, 234, 239, 266, 296
Lsp1109I	GCAGC	4 cut(s)	127, 272, 342, 463
LweI	GCATC	2 cut(s)	310, 439
MaeI	CTAG	4 cut(s)	90, 144, 510, 522
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	5, 40
MboI	GATC	2 cut(s)	3, 38
MboII	GAAGA	2 cut(s)	186, 383
MluCI	AATT	7 cut(s)	69, 105, 109, 362, 366, 405, 460
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	96, 326, 345, 508, 557
MseI	TTAA	8 cut(s)	27, 72, 102, 108, 327, 365, 414, 577
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	524, 564
NdeII	GATC	2 cut(s)	3, 38
NlaIII	CATG	3 cut(s)	10, 170, 473
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	337
PagI	TCATGA	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	142, 262, 357, 478
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PshBI	ATTAAT	2 cut(s)	108, 365
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	8 cut(s)	27, 72, 102, 108, 327, 365, 414, 577
SatI	GCNGC	4 cut(s)	141, 261, 356, 477
Sau3AI	GATC	2 cut(s)	3, 38
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	7 cut(s)	142, 235, 277, 312, 349, 448, 543
SfaNI	GCATC	2 cut(s)	310, 439
SfcI	CTRYAG	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	7 cut(s)	69, 105, 109, 362, 366, 405, 460
SspMI	CTAG	4 cut(s)	90, 144, 510, 522
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	347
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	37, 305, 318
TasI	AATT	7 cut(s)	69, 105, 109, 362, 366, 405, 460
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	8 cut(s)	27, 72, 102, 108, 327, 365, 414, 577
Tru9I	TTAA	8 cut(s)	27, 72, 102, 108, 327, 365, 414, 577
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	4 cut(s)	140, 260, 355, 476
Tsp45I	GTSAC	1 cut(s)	337
VspI	ATTAAT	2 cut(s)	108, 365
XapI	RAATTY	2 cut(s)	405, 460
XspI	CTAG	4 cut(s)	90, 144, 510, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.