Rw1G034260

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000710
Physical Location & Seq
Forward (+)
62181618 .. 62182295
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034260.1

Sequence Viewer

Length: 678 bp
ATGCTAGCCATCTGCTGGCAAATCTGGAAAGCCAGGAATGACTGTTCTTTCAGGAATATCAGAAGACAGCCAGCTTCTGTCATTACTGCTGCTGCAGTAACCCTAAAGAATTATGAGAATCACAACCTCCCAAATGTTGGAGAAGTTTCACAAAAACCCCAAGGTGCCATAAGATGGCGTCCTCCTCCAAAACAGTATGTAAAGATAAATTTCGATGGGTCTGTTTCAAGTTCGTCAGCAGCTTGTGGATTCATCCTAAGAGATCATGAAGGCAAGCCAATTGTTGCTGTCTCTAAAAATGCCGGAAGAGCTTCAGTGCCTATGGTCGAGGCTCTTGTTCTACTAGATGGCTTACAGCACGCAGCAAGGAAAAGAGTAAGGAAACTACAAGTTGAGGGAGATTCAAAACTAGTCATTGATGCAATCACAAAAAAGTTTAGCCCCCCTTGGAGAATACAACAAATCATTGAGGACATTCACAAAATTGCCTCGAAGTTTGAGGACATAACCTTCAAGCACATATTCAGGGAACCAAATTTTGCGGCAGATGCTTGTGCTCATCTTGGCTTAAACTGTAATAGAGAAAATAGTTGGGAACCTTGGCTCCCATCTAGGATTGCTAGGGCTGTTCATTTTGATAATCTCGAGCATGGTTGTCTGAGAGGAGATGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

225

Amino Acids

25.38

Weight (kDa)

9.43

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 70 - 187 1.7e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccB7I CCANNNNNTGG 3 cut(s) 15, 137, 174
AciI CCGC 1 cut(s) 542
AcsI RAATTY 2 cut(s) 208, 535
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 178
AfiI CCNNNNNNNGG 3 cut(s) 15, 137, 174
AgsI TTSAA 3 cut(s) 228, 405, 514
AhlI ACTAGT 1 cut(s) 409
AjnI CCWGG 1 cut(s) 32
AloI GAACNNNNNNTCC 4 cut(s) 28, 60, 588, 620
AluBI AGCT 3 cut(s) 74, 242, 311
AluI AGCT 3 cut(s) 74, 242, 311
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 644
ApeKI GCWGC 4 cut(s) 89, 92, 239, 362
ApoI RAATTY 2 cut(s) 208, 535
Asp700I GAANNNNTTC 1 cut(s) 310
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 644
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 4 cut(s) 76, 79, 251, 374
BccI CCATC 5 cut(s) 17, 168, 209, 341, 616
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 295
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 5 cut(s) 5, 344, 410, 612, 621
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 5 cut(s) 90, 93, 240, 363, 543
BlsI GCNGC 5 cut(s) 91, 94, 241, 364, 544
Bme1390I CCNGG 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 644
BmiI GGNNCC 4 cut(s) 166, 531, 597, 605
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 409, 538
BmtI GCTAGC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 160, 446, 599
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 137, 174
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 3 cut(s) 160, 446, 599
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 3 cut(s) 15, 137, 174
BseMII CTCAG 1 cut(s) 650
BseRI GAGGAG 2 cut(s) 174, 678
BseXI GCAGC 4 cut(s) 76, 79, 251, 374
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 15, 137, 174
BsmAI GTCTC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 542
BspCNI CTCAG 1 cut(s) 651
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 4 cut(s) 166, 531, 597, 605
BspMAI CTGCAG 1 cut(s) 97
BspOI GCTAGC 1 cut(s) 8
BspQI GCTCTTC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 160, 446, 599
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 178
BssT1I CCWWGG 3 cut(s) 160, 446, 599
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 3 cut(s) 44, 195, 575
Bst6I CTCTTC 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 178
BstC8I GCNNGC 5 cut(s) 6, 17, 72, 275, 360
BstDEI CTNAG 2 cut(s) 257, 659
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 308, 548
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 76, 79, 251, 374
BstV2I GAAGAC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 5 cut(s) 6, 17, 72, 275, 360
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 265
CseI GACGC 1 cut(s) 167
CviAII CATG 2 cut(s) 266, 650
DdeI CTNAG 2 cut(s) 257, 659
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco130I CCWWGG 3 cut(s) 160, 446, 599
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 3 cut(s) 160, 446, 599
ErhI CCWWGG 3 cut(s) 160, 446, 599
FaeI CATG 2 cut(s) 269, 653
FaiI YATR 8 cut(s) 114, 170, 198, 267, 323, 506, 521, 651
FatI CATG 2 cut(s) 265, 649
Fnu4HI GCNGC 5 cut(s) 90, 93, 240, 363, 543
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 5 cut(s) 90, 93, 240, 363, 543
FspBI CTAG 5 cut(s) 5, 344, 410, 612, 621
GluI GCNGC 5 cut(s) 90, 93, 240, 363, 543
HapII CCGG 1 cut(s) 303
HgaI GACGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 2 cut(s) 269, 653
HinfI GANTC 3 cut(s) 118, 249, 401
HpaII CCGG 1 cut(s) 303
Hpy188I TCNGA 2 cut(s) 62, 660
Hpy188III TCNNGA 4 cut(s) 25, 52, 266, 644
HpyAV CCTTC 2 cut(s) 263, 520
HpyCH4III ACNGT 3 cut(s) 44, 195, 575
HpyCH4V TGCA 2 cut(s) 95, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 548
HpyF3I CTNAG 2 cut(s) 257, 659
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 2 cut(s) 269, 653
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 609
LpnPI CCDG 7 cut(s) 10, 19, 37, 46, 84, 316, 511
Lsp1109I GCAGC 4 cut(s) 76, 79, 251, 374
LweI GCATC 2 cut(s) 409, 538
MaeI CTAG 5 cut(s) 5, 344, 410, 612, 621
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 2 cut(s) 75, 318
MfeI CAATTG 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 5 cut(s) 109, 208, 279, 483, 535
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 9 cut(s) 137, 192, 195, 322, 388, 463, 493, 499, 656
MroXI GAANNNNTTC 1 cut(s) 310
MseI TTAA 1 cut(s) 569
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 308, 548
NdeII GATC 1 cut(s) 262
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 269, 653
NlaIV GGNNCC 4 cut(s) 166, 531, 597, 605
PaeR7I CTCGAG 1 cut(s) 644
PagI TCATGA 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 3 cut(s) 118, 249, 401
PflMI CCANNNNNTGG 3 cut(s) 15, 137, 174
PkrI GCNGC 5 cut(s) 91, 94, 241, 364, 544
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 4 cut(s) 166, 531, 597, 605
PstI CTGCAG 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 5 cut(s) 90, 93, 240, 363, 543
Sau3AI GATC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 559
SetI ASST 7 cut(s) 76, 129, 166, 244, 313, 512, 601
SfaNI GCATC 2 cut(s) 409, 538
SfcI CTRYAG 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 644
SlaI CTCGAG 1 cut(s) 644
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 5 cut(s) 109, 208, 279, 483, 535
SsiI CCGC 1 cut(s) 542
SspMI CTAG 5 cut(s) 5, 344, 410, 612, 621
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 3 cut(s) 160, 446, 599
TaaI ACNGT 3 cut(s) 44, 195, 575
TaqI TCGA 4 cut(s) 213, 327, 491, 645
TasI AATT 5 cut(s) 109, 208, 279, 483, 535
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 3 cut(s) 118, 249, 401
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 1 cut(s) 321
TseI GCWGC 4 cut(s) 89, 92, 239, 362
TspDTI ATGAA 3 cut(s) 241, 282, 620
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 3 cut(s) 15, 137, 174
XapI RAATTY 2 cut(s) 208, 535
XhoI CTCGAG 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 5 cut(s) 5, 344, 410, 612, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.