Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Forward (+)

6123456 .. 6124218

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G053900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCAGCTTTAATAGTCTTACCTGCCAGAACTGCAACTCAACAAGGACCAGGGTCCCTATCAAGATTTGCCACCTTCACTCTTTCTCGTGCCCTTGGCACCGCAACTTCAGCAAATGAGACTCGGACCCAGAAGCTCGAGCGCATTGCAGACGAGCTTCTTGACCTTACAAAGATCGAGAGGCACGACTACTCCATCCTCTTCAGGCTGAAAATGGGCCTCAATCGTTACGGCCCGGCAGTCTCGGGGATTGGCTCGGCATCTTCGGAATCTGGGCCAGCCTCCGCAGACTCCAAGGTCGTTGAGAAGACTGCATTTGATATAAAGATTGAGAAGTTCGACGCAGCGGCAAAGATCAAAATCATAAAGGAGGTTAGGACTTTCACTGACCTGGGACTGAAGGAGGCTAAAGAACTGGTGGAGAAGGCCCCTGTTGTGGTGAAGAAAGGCGTGACCAAAGAGGAGGCGGGGCCCATTGTTGACAAACTTAAGGAATTGGGTGCTACTGTGGTATTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

174

Amino Acids

18.6

Weight (kDa)

9.25

Isoelectric Point (pI)

24.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	98
AciI	CCGC	4 cut(s)	102, 285, 347, 467
AcuI	CTGAAG	3 cut(s)	93, 187, 419
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflII	CTTAAG	1 cut(s)	488
AjnI	CCWGG	2 cut(s)	49, 390
AluBI	AGCT	3 cut(s)	8, 136, 157
AluI	AGCT	3 cut(s)	8, 136, 157
Alw26I	GTCTC	2 cut(s)	113, 247
Ama87I	CYCGRG	2 cut(s)	137, 244
AoxI	GGCC	5 cut(s)	217, 232, 275, 426, 470
ApaI	GGGCCC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	5, 344
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	9 cut(s)	47, 54, 126, 217, 233, 275, 427, 470, 471
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	451
AvaI	CYCGRG	2 cut(s)	137, 244
AvaII	GGWCC	3 cut(s)	47, 54, 126
BaeGI	GKGCMC	2 cut(s)	94, 474
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	17, 356
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	2 cut(s)	51, 392
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	113, 247
BfrI	CTTAAG	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	6, 345, 348
BlsI	GCNGC	3 cut(s)	7, 346, 349
Bme1390I	CCNGG	3 cut(s)	51, 236, 392
Bme18I	GGWCC	3 cut(s)	47, 54, 126
BmeT110I	CYCGRG	2 cut(s)	137, 244
BmgT120I	GGNCC	9 cut(s)	47, 54, 126, 217, 233, 275, 427, 470, 471
BmiI	GGNNCC	7 cut(s)	55, 56, 100, 128, 429, 471, 472
BmrFI	CCNGG	3 cut(s)	51, 236, 392
BmsI	GCATC	1 cut(s)	269
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	359
BsaJI	CCNNGG	4 cut(s)	50, 94, 294, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	2 cut(s)	51, 392
BseDI	CCNNGG	4 cut(s)	50, 94, 294, 391
BseGI	GGATG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	2 cut(s)	94, 474
BseXI	GCAGC	2 cut(s)	17, 356
BshFI	GGCC	5 cut(s)	219, 234, 277, 428, 472
BshNI	GGYRCC	1 cut(s)	98
BsiHKCI	CYCGRG	2 cut(s)	137, 244
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	40, 408
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	113, 247
BsmFI	GGGAC	2 cut(s)	40, 408
BsnI	GGCC	5 cut(s)	219, 234, 277, 428, 472
BsoBI	CYCGRG	2 cut(s)	137, 244
Bsp120I	GGGCCC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	94, 474
Bsp143I	GATC	2 cut(s)	174, 354
BspACI	CCGC	4 cut(s)	102, 285, 347, 467
BspANI	GGCC	5 cut(s)	219, 234, 277, 428, 472
BspLI	GGNNCC	7 cut(s)	55, 56, 100, 128, 429, 471, 472
BspMI	ACCTGC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	4 cut(s)	50, 94, 294, 391
BssMI	GATC	2 cut(s)	174, 354
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	94, 294
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	51, 392
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	177, 357
BstMAI	GTCTC	2 cut(s)	113, 247
BstMBI	GATC	2 cut(s)	174, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 110
BstNI	CCWGG	2 cut(s)	51, 392
BstPAI	GACNNNNGTC	1 cut(s)	52
BstSCI	CCNGG	3 cut(s)	49, 234, 390
BstSLI	GKGCMC	2 cut(s)	94, 474
BstV1I	GCAGC	2 cut(s)	17, 356
BstV2I	GAAGAC	1 cut(s)	314
BsuRI	GGCC	5 cut(s)	219, 234, 277, 428, 472
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	9 cut(s)	47, 54, 126, 217, 233, 275, 427, 470, 471
CseI	GACGC	1 cut(s)	350
DpnI	GATC	2 cut(s)	176, 356
DpnII	GATC	2 cut(s)	174, 354
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	94, 294
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	3 cut(s)	47, 54, 126
Eco57I	CTGAAG	3 cut(s)	93, 187, 419
Eco88I	CYCGRG	2 cut(s)	137, 244
EcoO109I	RGGNCCY	3 cut(s)	54, 427, 470
EcoRII	CCWGG	2 cut(s)	49, 390
EcoT14I	CCWWGG	2 cut(s)	94, 294
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	2 cut(s)	94, 294
FaiI	YATR	2 cut(s)	323, 365
FaqI	GGGAC	2 cut(s)	40, 408
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	6, 345, 348
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	3 cut(s)	6, 345, 348
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	3 cut(s)	6, 345, 348
HaeIII	GGCC	5 cut(s)	219, 234, 277, 428, 472
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	121, 269, 290
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	2 cut(s)	126, 268
Hpy188III	TCNNGA	3 cut(s)	63, 161, 178
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	85, 394, 418
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	35, 149, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 110
HspAI	GCGC	1 cut(s)	142
KflI	GGGWCCC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	174, 354
Lsp1109I	GCAGC	2 cut(s)	17, 356
LweI	GCATC	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	227, 451
MalI	GATC	2 cut(s)	176, 356
MboI	GATC	2 cut(s)	174, 354
MboII	GAAGA	4 cut(s)	193, 255, 319, 454
MhlI	GDGCHC	2 cut(s)	94, 474
MluCI	AATT	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	115, 284
MnlI	CCTC	8 cut(s)	174, 209, 230, 292, 364, 397, 454, 457
MseI	TTAA	2 cut(s)	11, 489
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	3 cut(s)	51, 236, 392
MvaI	CCWGG	2 cut(s)	51, 392
MwoI	GCNNNNNNNGC	2 cut(s)	32, 110
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	2 cut(s)	174, 354
NlaIV	GGNNCC	7 cut(s)	55, 56, 100, 128, 429, 471, 472
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	7, 346, 349
PleI	GAGTC	2 cut(s)	115, 284
PpsI	GAGTC	2 cut(s)	115, 284
PpuMI	RGGWCCY	1 cut(s)	54
PshAI	GACNNNNGTC	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	49, 390
PspGI	CCWGG	2 cut(s)	49, 390
PspN4I	GGNNCC	7 cut(s)	55, 56, 100, 128, 429, 471, 472
PspOMI	GGGCCC	1 cut(s)	470
PspPI	GGNCC	9 cut(s)	47, 54, 126, 217, 233, 275, 427, 470, 471
PspPPI	RGGWCCY	1 cut(s)	54
PspXI	VCTCGAGB	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	11, 489
SatI	GCNGC	3 cut(s)	6, 345, 348
Sau3AI	GATC	2 cut(s)	174, 354
Sau96I	GGNCC	9 cut(s)	47, 54, 126, 217, 233, 275, 427, 470, 471
SchI	GAGTC	2 cut(s)	115, 284
ScrFI	CCNGG	3 cut(s)	51, 236, 392
SduI	GDGCHC	2 cut(s)	94, 474
SetI	ASST	9 cut(s)	10, 25, 77, 138, 159, 168, 300, 375, 393
SfaNI	GCATC	1 cut(s)	269
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	3 cut(s)	47, 54, 126
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	137, 488
SmoI	CTYRAG	2 cut(s)	137, 488
Sse9I	AATT	1 cut(s)	494
SsiI	CCGC	4 cut(s)	102, 285, 347, 467
StyD4I	CCNGG	3 cut(s)	49, 234, 390
StyI	CCWWGG	2 cut(s)	94, 294
TaaI	ACNGT	1 cut(s)	508
TaqI	TCGA	3 cut(s)	138, 177, 339
TasI	AATT	1 cut(s)	494
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	11, 489
Tru9I	TTAA	2 cut(s)	11, 489
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	5, 344
Tsp45I	GTSAC	1 cut(s)	451
TspRI	CASTG	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	3 cut(s)	47, 54, 126
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.