Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007780.1

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Reverse (-)

23349 .. 23819

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007780.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgtcccaatccggacctgcctcgagcagtctttctcgcaccctctacacagccactgcagcaagtgagcgtcggtccaagaatcttgagcgcattactgacaacctcttggacctcacaaagattgagaggcatgactactccatcctcttcaaacttaaaatgggcctcaacagatatggtccagctgtctcagggataggcccgacatcttccgaatctgggtctgcctccacaggctccaaggtggtggtgaagaccgcatttgatataaagcttgagaagtttgacggagtggcaaagatcaaaatcataaaggaggttaggactttcattgatttgggactaaaggacgctaaagacttggtggaaaaggctccagttttgctgaaaatgggtgtcaccagagaggaggcaggccccattgttgacaggctcaaggagttgggtgctactgtggtattggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

156

Amino Acids

16.9

Weight (kDa)

9.42

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	2 cut(s)	188, 277
AluI	AGCT	2 cut(s)	188, 277
Alw26I	GTCTC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	22
Aor13HI	TCCGGA	1 cut(s)	11
AoxI	GGCC	3 cut(s)	166, 202, 418
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	7 cut(s)	14, 75, 112, 166, 182, 203, 419
AsuHPI	GGTGA	2 cut(s)	265, 394
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	4 cut(s)	14, 75, 112, 182
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme18I	GGWCC	4 cut(s)	14, 75, 112, 182
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	7 cut(s)	14, 75, 112, 166, 182, 203, 419
BmiI	GGNNCC	3 cut(s)	241, 378, 421
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	3 cut(s)	107, 299, 422
BsaBI	GATNNNNATC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	308
BseAI	TCCGGA	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	3 cut(s)	168, 204, 420
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	168, 204, 420
BsoBI	CYCGRG	1 cut(s)	22
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	168, 204, 420
BspCNI	CTCAG	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	241, 378, 421
BspMAI	CTGCAG	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	168, 204, 420
BtsCI	GGATG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	7 cut(s)	14, 75, 112, 166, 182, 203, 419
CseI	GACGC	2 cut(s)	59, 362
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	9 cut(s)	53, 168, 188, 204, 240, 277, 377, 420, 436
CviKI_1	RGCY	9 cut(s)	53, 168, 188, 204, 240, 277, 377, 420, 436
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	4 cut(s)	14, 75, 112, 182
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	137
FaiI	YATR	4 cut(s)	135, 180, 272, 314
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	60
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	3 cut(s)	168, 204, 420
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	2 cut(s)	59, 362
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	82, 218
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	2 cut(s)	265, 394
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	12, 86
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	2 cut(s)	245, 382
Lsp1109I	GCAGC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	3 cut(s)	142, 204, 268
MroI	TCCGGA	1 cut(s)	11
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	3 cut(s)	241, 378, 421
NmuCI	GTSAC	1 cut(s)	400
PaeR7I	CTCGAG	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	82, 218
PkrI	GCNGC	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	241, 378, 421
PspPI	GGNCC	7 cut(s)	14, 75, 112, 166, 182, 203, 419
PspXI	VCTCGAGB	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	7 cut(s)	14, 75, 112, 166, 182, 203, 419
SetI	ASST	7 cut(s)	19, 108, 117, 190, 249, 279, 324
SfcI	CTRYAG	1 cut(s)	57
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	4 cut(s)	14, 75, 112, 182
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	4 cut(s)	22, 86, 278, 437
SmoI	CTYRAG	4 cut(s)	22, 86, 278, 437
SsiI	CCGC	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	82, 218
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	322
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	4 cut(s)	14, 75, 112, 182
XhoI	CTCGAG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.