Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010769

Physical Location & Seq

Genomic Coordinates Forward (+)

6217173 .. 6218275

Gene Structure 1103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCAGAAGTCAAGCTCTTTAAGACATGGTCAAGCTTTTTTGCTTTGAGGATAGTTTGGGCACTGAAGCTCAAAGATGTCCCCTATGATACCATCCTTGAAGATCTTTCAAACAAAAGTCCTTTGCTTCTTCAACACAACCCCATTCATAAGAAGGTTCCAGTGCTTGTGCACAACGGAAAATCAATTGCTGAATCTCTTGTGATCCTTGAATACATTGAGGAAACATGGAAACATAACCCTTTGCTGCCCCAAGATCCTCATGATAGAGCCGCTGCACGATTTTGGGCCAAATTTGGTGATGACAAGATTTTTCCAGCTGTTAAGGACACATTATGCAGTGAAGGGAAAGAGCAAGAGGAAGCTATTGTGAAAGCAAAGGAGAACTTGAAGTACTTGGAAGGAGAGCTAAAGGGAAAGAAATTCTTTGGGGGAGAGCAAATTGGATTTACAGATATTGCGCTTGGATGGCTTGCACACCATGAGAACGTGTTTGAAGAGGTAGCTAATGTGAAGCTGATAGCAGAAGATGAGTTCCCATTGTTATCAGAATGGCAAAAGACTTTTGCAGATGTTCCTATGATCAAAGAGAATTGGCCTCCTAGAGAGAAACTTGTCACTAAATTTCAGGCGATCCGTGAGCGTGGACTTGCCAAGAAGCTGAAGAAGGCACCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

226

Amino Acids

26.01

Weight (kDa)

7.79

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	3 - 75	4.9e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	6 - 76	1.9e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	12 - 76	6.4e-14	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	96 - 191	9.7e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09630
fragaria_vesca	FvH4_2g11060
malus_domestica	MD10G1057900.v1.1
prunus_persica	Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1
pyrus_communis	pycom10g04460
rosa_chinensis	RchiOBHm_Chr6g0269261
rosa_laevigata	RLG00000013867
rosa_roxburghii	Rroxscaffold_7G00198900
rosa_rugosa	Rorug06G0046900 Rorug06G0047000 Rorug06G0047100 Rorug06G0047200
rosa_samantha	Rh6AG166700 Rh6BG172300 Rh6DG157800
rosa_wichuraiana	Rw6G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	670
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	3 cut(s)	199, 251, 628
AcsI	RAATTY	3 cut(s)	293, 422, 623
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	6 cut(s)	101, 111, 134, 212, 391, 497
AluBI	AGCT	9 cut(s)	16, 36, 70, 320, 365, 409, 506, 517, 661
AluI	AGCT	9 cut(s)	16, 36, 70, 320, 365, 409, 506, 517, 661
Alw21I	GWGCWC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	199, 251, 628
AoxI	GGCC	2 cut(s)	288, 596
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	247, 275
ApoI	RAATTY	3 cut(s)	293, 422, 623
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	311
BaeGI	GKGCMC	2 cut(s)	64, 174
BanI	GGYRCC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	234, 262
BccI	CCATC	2 cut(s)	101, 462
BclI	TGATCA	1 cut(s)	582
BfaI	CTAG	1 cut(s)	603
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	3 cut(s)	248, 273, 276
BlsI	GCNGC	3 cut(s)	249, 274, 277
BmcAI	AGTACT	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	159, 672
Bse1I	ACTGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	93, 473
BseNI	ACTGG	1 cut(s)	161
BseSI	GKGCMC	2 cut(s)	64, 174
BseXI	GCAGC	2 cut(s)	234, 262
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	290, 598
BshNI	GGYRCC	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	290, 598
Bsp1286I	GDGCHC	2 cut(s)	64, 174
Bsp143I	GATC	5 cut(s)	103, 204, 256, 582, 633
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	2 cut(s)	290, 598
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	159, 672
BspPI	GGATC	3 cut(s)	199, 251, 628
BspT107I	GGYRCC	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	5 cut(s)	103, 204, 256, 582, 633
Bst6I	CTCTTC	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	93, 473
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	5 cut(s)	106, 207, 259, 585, 636
BstMBI	GATC	5 cut(s)	103, 204, 256, 582, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstSLI	GKGCMC	2 cut(s)	64, 174
BstV1I	GCAGC	2 cut(s)	234, 262
BstX2I	RGATCY	2 cut(s)	103, 256
BstYI	RGATCY	2 cut(s)	103, 256
BsuRI	GGCC	2 cut(s)	290, 598
BtsCI	GGATG	2 cut(s)	93, 473
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	3 cut(s)	62, 168, 346
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	4 cut(s)	27, 228, 263, 482
CviQI	GTAC	1 cut(s)	394
DpnI	GATC	5 cut(s)	105, 206, 258, 584, 635
DpnII	GATC	5 cut(s)	103, 204, 256, 582, 633
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	86
FaeI	CATG	4 cut(s)	30, 231, 266, 485
FaiI	YATR	9 cut(s)	28, 87, 150, 229, 237, 264, 337, 483, 581
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 410, 442
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	4 cut(s)	26, 227, 262, 481
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	248, 273, 276
FokI	GGATG	2 cut(s)	80, 480
Fsp4HI	GCNGC	3 cut(s)	248, 273, 276
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	3 cut(s)	248, 273, 276
HaeIII	GGCC	2 cut(s)	290, 598
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	4 cut(s)	30, 231, 266, 485
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	172, 647
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	172, 647
HpyAV	CCTTC	4 cut(s)	148, 338, 395, 661
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	5 cut(s)	172, 278, 339, 476, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	4 cut(s)	30, 231, 266, 485
HspAI	GCGC	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	5 cut(s)	103, 204, 256, 582, 633
LpnPI	CCDG	3 cut(s)	174, 330, 614
Lsp1109I	GCAGC	2 cut(s)	234, 262
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	5 cut(s)	105, 206, 258, 584, 635
MboI	GATC	5 cut(s)	103, 204, 256, 582, 633
MboII	GAAGA	5 cut(s)	113, 122, 509, 539, 676
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	2 cut(s)	103, 256
MhlI	GDGCHC	2 cut(s)	64, 174
MluCI	AATT	6 cut(s)	186, 293, 422, 441, 592, 623
MnlI	CCTC	6 cut(s)	42, 214, 270, 352, 493, 609
MseI	TTAA	2 cut(s)	21, 324
MslI	CAYNNNNRTG	1 cut(s)	676
MspA1I	CMGCKG	2 cut(s)	275, 320
MunI	CAATTG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	5 cut(s)	103, 204, 256, 582, 633
NlaIII	CATG	4 cut(s)	30, 231, 266, 485
NlaIV	GGNNCC	2 cut(s)	159, 672
NmuCI	GTSAC	1 cut(s)	616
PagI	TCATGA	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	194
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	249, 274, 277
PspN4I	GGNNCC	2 cut(s)	159, 672
PspPI	GGNCC	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	377, 409
PsuI	RGATCY	2 cut(s)	103, 256
PsyI	GACNNNGTC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	676
SaqAI	TTAA	2 cut(s)	21, 324
SatI	GCNGC	3 cut(s)	248, 273, 276
Sau3AI	GATC	5 cut(s)	103, 204, 256, 582, 633
Sau96I	GGNCC	1 cut(s)	288
ScaI	AGTACT	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	64, 174
SmiMI	CAYNNNNRTG	1 cut(s)	676
Sse9I	AATT	6 cut(s)	186, 293, 422, 441, 592, 623
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	1 cut(s)	603
TaiI	ACGT	1 cut(s)	492
TasI	AATT	6 cut(s)	186, 293, 422, 441, 592, 623
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	21, 324
Tru9I	TTAA	2 cut(s)	21, 324
TscAI	CASTG	3 cut(s)	69, 168, 346
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	2 cut(s)	247, 275
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	2 cut(s)	192, 626
TspRI	CASTG	3 cut(s)	69, 168, 346
Tth111I	GACNNNGTC	1 cut(s)	28
VneI	GTGCAC	1 cut(s)	170
XapI	RAATTY	3 cut(s)	293, 422, 623
XspI	CTAG	1 cut(s)	603
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.