Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010769

Physical Location & Seq

Genomic Coordinates Reverse (-)

11100438 .. 11104237

Gene Structure 3800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G076700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGCTAAGTACCATCAAAGATGCATTTGAGCGTGTTGTTAAGAAGCAAAAATTATGTTCTTCTAGATCCCAAGAAGTAATTGACCTAGTTGGTCGCGAAATTGAACAGGCACTGACGCGACTCCTATCAGCTCATGATCCCACCTCTCCTGTTGATTATAGATCCATCCTTGCAGAGCTTAAACTCAAGCTCAATGGAATTGGCCCAATCCACCTGTTAGAGGGCTCACATAAGGAACTAAACGGAAACCTTAGCAAGTACACTAAATTCCTGGAAAAGTCCTTGAATCCAGACATATCAAAGGCATACCGAGATGTTGACTTCGACCATCACATTGAGAATCAGCTGATTGCAAATCATTTTTACCGGCAAGGTTCGTTTGATCTGGGAGATGGCATAATAGATGAGGCTGGAGAACCAGAGTCAACCATTCTAAAATCTCAGTTCGTGGTAATGCATCAGATACTTGAGGCTATGAAGGTTAAGAACCTCGAGCCTGCTCTGAACTGGGTCTCTGCTAACCGCGAGAAACTGAATCAGAGTGGGTCAAATCTCGAGCTTAAACTTCATAGTTTGCAGTTTCTGGAGATTTTGAAAAAGGGAACTCAAGCTGATGCACTTAAATATGCCAGGACTTGCCTTGCTCCTTTTGCTTCTCCCGCCTCCCCTCACAAGGAAGAGGTCCTGAAGCTCATGGGTTGCCTGTTGTATCCAGGAAGGCTTGACAGCTCCCCATATTCTGAGTTTACATCCCCAACCCATTGGGAGAAGTCGATGGAGGATCTCACACGGCAGTTCTGCAGTCTGTTGGGGCAGTCCTATAATAGCCCGTTGAGTATGACAATAGCTGCTGGATTGGAAGGGTTGCCAACTCTCTTGAAGTTGGCAAATGTAATGGCTGCGAAGAAGCAGGAGTGGCAGGCGATGAAACAATTGCCAGTCCCTGTGGAGTTGGGGAAGGAATTTCAGTTCCATTCAATATTTGTCTGTCCTGTGAGTAGAGATCAAAGCAGTGAAGAGAATCCGCCTATGTTGATGCCATGTTTGCATGTTCTCTGCAAGCAATCAATCCTGAAGCTGACCAAGAGCAGCACACGAACATTTAAATGCCCGTATTGTCCAGCAGAGGCTTCAGCTGCTCAGTGCCGCCAGCTATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

389

Amino Acids

43.61

Weight (kDa)

7.17

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09630
fragaria_vesca	FvH4_2g11060
malus_domestica	MD10G1057900.v1.1
prunus_persica	Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1
pyrus_communis	pycom10g04460
rosa_chinensis	RchiOBHm_Chr6g0269261
rosa_laevigata	RLG00000013867
rosa_roxburghii	Rroxscaffold_7G00198900
rosa_rugosa	Rorug06G0046900 Rorug06G0047000 Rorug06G0047100 Rorug06G0047200
rosa_samantha	Rh6AG166700 Rh6BG172300 Rh6DG157800
rosa_wichuraiana	Rw6G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	99, 121, 528
AciI	CCGC	4 cut(s)	526, 663, 1028, 1150
AclWI	GGATC	4 cut(s)	63, 134, 159, 792
AcsI	RAATTY	2 cut(s)	269, 965
AcuI	CTGAAG	3 cut(s)	710, 1097, 1119
AfaI	GTAC	2 cut(s)	13, 263
AfiI	CCNNNNNNNGG	2 cut(s)	223, 676
AgsI	TTSAA	5 cut(s)	107, 289, 598, 883, 981
AjnI	CCWGG	3 cut(s)	273, 632, 715
AloI	GAACNNNNNNTCC	2 cut(s)	956, 988
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	4 cut(s)	63, 134, 159, 792
AlwNI	CAGNNNCTG	3 cut(s)	115, 586, 947
Ama87I	CYCGRG	2 cut(s)	494, 557
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	851, 902, 1092, 1139
ApoI	RAATTY	2 cut(s)	269, 965
AspS9I	GGNCC	2 cut(s)	206, 685
AvaI	CYCGRG	2 cut(s)	494, 557
AvaII	GGWCC	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	230
BbvI	GCAGC	4 cut(s)	838, 889, 1104, 1126
BccI	CCATC	5 cut(s)	23, 176, 339, 389, 772
BceAI	ACGGC	1 cut(s)	809
BciT130I	CCWGG	3 cut(s)	275, 634, 717
BciVI	GTATCC	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	2 cut(s)	66, 89
BfmI	CTRYAG	1 cut(s)	802
BfuI	GTATCC	1 cut(s)	723
BisI	GCNGC	5 cut(s)	852, 903, 1093, 1140, 1150
BlsI	GCNGC	5 cut(s)	853, 904, 1094, 1141, 1151
Bme1390I	CCNGG	3 cut(s)	275, 634, 717
Bme18I	GGWCC	1 cut(s)	685
BmeT110I	CYCGRG	2 cut(s)	494, 557
BmgT120I	GGNCC	2 cut(s)	206, 685
BmrFI	CCNGG	3 cut(s)	275, 634, 717
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	4 cut(s)	13, 469, 607, 1029
BmuI	ACTGGG	1 cut(s)	520
BpmI	CTGGAG	2 cut(s)	435, 608
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	3 cut(s)	173, 491, 594
BsaI	GGTCTC	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 676
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	515, 941
BseBI	CCWGG	3 cut(s)	275, 634, 717
BseGI	GGATG	2 cut(s)	168, 752
BseLI	CCNNNNNNNGG	2 cut(s)	223, 676
BseMII	CTCAG	3 cut(s)	458, 735, 1157
BseNI	ACTGG	2 cut(s)	515, 941
BseXI	GCAGC	4 cut(s)	838, 889, 1104, 1126
Bsh1236I	CGCG	3 cut(s)	99, 121, 528
BshFI	GGCC	1 cut(s)	207
BsiHKCI	CYCGRG	2 cut(s)	494, 557
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	2 cut(s)	223, 676
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	929
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	520
BsoBI	CYCGRG	2 cut(s)	494, 557
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	6 cut(s)	68, 139, 164, 385, 784, 1006
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	4 cut(s)	526, 663, 1028, 1150
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	3 cut(s)	457, 736, 1156
BspFNI	CGCG	3 cut(s)	99, 121, 528
BspHI	TCATGA	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	806
BspPI	GGATC	4 cut(s)	63, 134, 159, 792
BspTNI	GGTCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	515, 941
BssAI	RCCGGY	1 cut(s)	369
BssMI	GATC	6 cut(s)	68, 139, 164, 385, 784, 1006
Bst2UI	CCWGG	3 cut(s)	275, 634, 717
Bst6I	CTCTTC	2 cut(s)	675, 1014
BstC8I	GCNNGC	4 cut(s)	501, 924, 1064, 1154
BstDEI	CTNAG	5 cut(s)	8, 254, 444, 744, 1143
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	168, 752
BstFNI	CGCG	3 cut(s)	99, 121, 528
BstKTI	GATC	6 cut(s)	71, 142, 167, 388, 787, 1009
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	6 cut(s)	68, 139, 164, 385, 784, 1006
BstMWI	GCNNNNNNNGC	5 cut(s)	653, 662, 919, 1048, 1139
BstNI	CCWGG	3 cut(s)	275, 634, 717
BstNSI	RCATGY	1 cut(s)	1055
BstSCI	CCNGG	3 cut(s)	273, 632, 715
BstSFI	CTRYAG	1 cut(s)	802
BstUI	CGCG	3 cut(s)	99, 121, 528
BstV1I	GCAGC	4 cut(s)	838, 889, 1104, 1126
BstX2I	RGATCY	3 cut(s)	68, 164, 784
BstXI	CCANNNNNNTGG	1 cut(s)	765
BstYI	RGATCY	3 cut(s)	68, 164, 784
BsuI	GTATCC	1 cut(s)	723
BsuRI	GGCC	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	941
BtsCI	GGATG	2 cut(s)	168, 752
BtsI	GCAGTG	1 cut(s)	1021
BtsIMutI	CAGTG	3 cut(s)	113, 1021, 1151
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	4 cut(s)	501, 924, 1064, 1154
CaiI	CAGNNNCTG	3 cut(s)	115, 586, 947
CciI	TCATGA	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	206, 685
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	12, 262
CviAII	CATG	4 cut(s)	137, 697, 1044, 1052
CviQI	GTAC	2 cut(s)	12, 262
DdeI	CTNAG	5 cut(s)	8, 254, 444, 744, 1143
DpnI	GATC	6 cut(s)	70, 141, 166, 387, 786, 1008
DpnII	GATC	6 cut(s)	68, 139, 164, 385, 784, 1006
DraI	TTTAAA	1 cut(s)	1108
Eam1104I	CTCTTC	2 cut(s)	675, 1014
EarI	CTCTTC	2 cut(s)	675, 1014
EciI	GGCGGA	1 cut(s)	1017
Eco24I	GRGCYC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	685
Eco57I	CTGAAG	3 cut(s)	710, 1097, 1119
Eco88I	CYCGRG	2 cut(s)	494, 557
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	3 cut(s)	273, 632, 715
EcoT22I	ATGCAT	2 cut(s)	28, 462
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	4 cut(s)	140, 700, 1047, 1055
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	4 cut(s)	136, 696, 1043, 1051
FauI	CCCGC	1 cut(s)	670
Fnu4HI	GCNGC	5 cut(s)	852, 903, 1093, 1140, 1150
FokI	GGATG	2 cut(s)	155, 739
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	5 cut(s)	852, 903, 1093, 1140, 1150
FspBI	CTAG	2 cut(s)	66, 89
GluI	GCNGC	5 cut(s)	852, 903, 1093, 1140, 1150
GsuI	CTGGAG	2 cut(s)	435, 608
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	140, 700, 1047, 1055
HincII	GTYRAC	2 cut(s)	322, 429
HindII	GTYRAC	2 cut(s)	322, 429
HinfI	GANTC	6 cut(s)	123, 289, 343, 425, 538, 1024
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	4 cut(s)	264, 322, 429, 750
Hpy188I	TCNGA	5 cut(s)	465, 507, 543, 745, 1166
Hpy188III	TCNNGA	9 cut(s)	66, 98, 137, 293, 557, 587, 688, 880, 1075
Hpy8I	GTNNAC	4 cut(s)	264, 322, 429, 750
HpyAV	CCTTC	4 cut(s)	475, 714, 857, 955
HpyCH4V	TGCA	9 cut(s)	26, 176, 356, 460, 580, 620, 804, 1051, 1062
HpyF10VI	GCNNNNNNNGC	5 cut(s)	653, 662, 919, 1048, 1139
HpyF3I	CTNAG	5 cut(s)	8, 254, 444, 744, 1143
Hsp92II	CATG	4 cut(s)	140, 700, 1047, 1055
Kzo9I	GATC	6 cut(s)	68, 139, 164, 385, 784, 1006
LmnI	GCTCC	3 cut(s)	4, 652, 737
Lsp1109I	GCAGC	4 cut(s)	838, 889, 1104, 1126
LweI	GCATC	4 cut(s)	13, 469, 607, 1029
MaeI	CTAG	2 cut(s)	66, 89
MalI	GATC	6 cut(s)	70, 141, 166, 387, 786, 1008
MboI	GATC	6 cut(s)	68, 139, 164, 385, 784, 1006
MboII	GAAGA	4 cut(s)	54, 692, 919, 1031
MfeI	CAATTG	1 cut(s)	935
MflI	RGATCY	3 cut(s)	68, 164, 784
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	7 cut(s)	53, 81, 102, 201, 269, 935, 965
MlyI	GAGTC	2 cut(s)	117, 434
Mph1103I	ATGCAT	2 cut(s)	28, 462
MseI	TTAA	6 cut(s)	42, 183, 486, 564, 624, 1107
MslI	CAYNNNNRTG	1 cut(s)	1108
MspA1I	CMGCKG	2 cut(s)	349, 1139
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	3 cut(s)	275, 634, 717
MunI	CAATTG	1 cut(s)	935
MvaI	CCWGG	3 cut(s)	275, 634, 717
MvnI	CGCG	3 cut(s)	99, 121, 528
MwoI	GCNNNNNNNGC	5 cut(s)	653, 662, 919, 1048, 1139
NdeII	GATC	6 cut(s)	68, 139, 164, 385, 784, 1006
NlaIII	CATG	4 cut(s)	140, 700, 1047, 1055
NruI	TCGCGA	1 cut(s)	99
NsiI	ATGCAT	2 cut(s)	28, 462
NspI	RCATGY	1 cut(s)	1055
PaeR7I	CTCGAG	2 cut(s)	494, 557
PagI	TCATGA	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	289, 343, 538, 1024
PfoI	TCCNGGA	2 cut(s)	273, 715
PkrI	GCNGC	5 cut(s)	853, 904, 1094, 1141, 1151
PleI	GAGTC	2 cut(s)	117, 433
PpsI	GAGTC	2 cut(s)	117, 433
PpuMI	RGGWCCY	1 cut(s)	685
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	3 cut(s)	273, 632, 715
PspGI	CCWGG	3 cut(s)	273, 632, 715
PspPI	GGNCC	2 cut(s)	206, 685
PspPPI	RGGWCCY	1 cut(s)	685
PspXI	VCTCGAGB	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	806
PstNI	CAGNNNCTG	3 cut(s)	115, 586, 947
PsuI	RGATCY	3 cut(s)	68, 164, 784
PvuII	CAGCTG	2 cut(s)	349, 1139
RruI	TCGCGA	1 cut(s)	99
RsaI	GTAC	2 cut(s)	13, 263
RsaNI	GTAC	2 cut(s)	12, 262
RseI	CAYNNNNRTG	1 cut(s)	1108
SaqAI	TTAA	6 cut(s)	42, 183, 486, 564, 624, 1107
SatI	GCNGC	5 cut(s)	852, 903, 1093, 1140, 1150
Sau3AI	GATC	6 cut(s)	68, 139, 164, 385, 784, 1006
Sau96I	GGNCC	2 cut(s)	206, 685
SchI	GAGTC	2 cut(s)	117, 434
ScrFI	CCNGG	3 cut(s)	275, 634, 717
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	4 cut(s)	13, 469, 607, 1029
SfcI	CTRYAG	1 cut(s)	802
Sfr274I	CTCGAG	2 cut(s)	494, 557
SinI	GGWCC	1 cut(s)	685
SlaI	CTCGAG	2 cut(s)	494, 557
SmiI	ATTTAAAT	1 cut(s)	1108
SmiMI	CAYNNNNRTG	1 cut(s)	1108
SmlI	CTYRAG	5 cut(s)	188, 470, 494, 557, 609
SmoI	CTYRAG	5 cut(s)	188, 470, 494, 557, 609
Sse9I	AATT	7 cut(s)	53, 81, 102, 201, 269, 935, 965
SsiI	CCGC	4 cut(s)	526, 663, 1028, 1150
SspI	AATATT	1 cut(s)	984
SspMI	CTAG	2 cut(s)	66, 89
StyD4I	CCNGG	3 cut(s)	273, 632, 715
SwaI	ATTTAAAT	1 cut(s)	1108
TaqI	TCGA	4 cut(s)	327, 495, 558, 776
TasI	AATT	7 cut(s)	53, 81, 102, 201, 269, 935, 965
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	1152
TfiI	GAWTC	4 cut(s)	289, 343, 538, 1024
Tru1I	TTAA	6 cut(s)	42, 183, 486, 564, 624, 1107
Tru9I	TTAA	6 cut(s)	42, 183, 486, 564, 624, 1107
TscAI	CASTG	3 cut(s)	120, 1021, 1151
TseI	GCWGC	4 cut(s)	851, 902, 1092, 1139
TspDTI	ATGAA	3 cut(s)	494, 560, 944
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	3 cut(s)	120, 1021, 1151
VpaK11BI	GGWCC	1 cut(s)	685
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	2 cut(s)	269, 965
XbaI	TCTAGA	1 cut(s)	65
XceI	RCATGY	1 cut(s)	1055
XhoI	CTCGAG	2 cut(s)	494, 557
XspI	CTAG	2 cut(s)	66, 89
Zsp2I	ATGCAT	2 cut(s)	28, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.