Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006271

Physical Location & Seq

Genomic Coordinates Reverse (-)

3243915 .. 3246839

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAAGAGCTAAAGAGACTGGAGAAGTTTCAGACTGTTGTATCATCCATTACTTGTCACGGTTTACTTTCTTCTTCATCTTCCGATTCAGCTTCTTCTTCTCGCTTCCTCTCCAATCTAGTCCTTTTCCTGGTACAACCATGCGGCGAACTCGATTTAGATTCGAAACTGGGTCTACTCTCTGAGTTCTTACCGAAAATCTCAGGACCCTTCCTGGAAGAGATATCGAGATCACTTGAGCTAGACGATGAAGCTACTACACCACTTAACACAATTTCAGCAGAGTGCCAAAATAGTTGTGTGAAGAGGAGTGTCATGGACAATGTTGATCCTTACATGTCACAGAAGCACCAAGAAGTTGTGGCAATGGTCGGGCTAGATGCAATGAAGAGAGCAAACTCTACACTTGAGGATTTCTCCAGGTCTTATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTGTGCTTTCATTCACAGAGAGTTACATATATCAGATGGATGCTCTTAATGAGAAGATAGTCAGTGAATCAGCTTGTGGATCCCAAGTCATTTATTCAAGTCATGGATGGAATGCTGAATCACGAGTTCTGTTTGAAACTAATCCGTTGAAGCCGCTTGGAGATCTGCTTGAACGTGAGGCCCTTTTGACAAACAGAGTACAACAAGAGTTTAATTCGGGTGAAGAGTATTGGGCGTTAGAAAGAAAGCTTTGTCATGCACTTTCAAACAAAAACAAGATCTGTCTCGAAGATGTGATGAGAGCAATTCATTTGAAGTCCTTTGATTACAGGGTGTTGAATCTTCTACTATACAAGTTGAGAGGAGAAGAGGTGAATGAGTTGCATATGGACTTCTTGTCAATCTCAGAGTTTCTGGTTGAAGTAGCGGATGATCTGTTCGATTACGAGGATGATGTTCTTGAGAACAATTTCAATGTATTACGTATGTTTGTGGGAATATTCGGCTCATCGAATGCACCCACTGAACTGGCGAAGCGGATATCGGAAGCTGAAGAGAAGTATGAAGAGATTATGAAATCCCTGGATCCACATTTGTCTTCAAATTACCAAAGAAGATGTGAAGAAGCTACTAAAGAAGGTGGGAAAATTTCTGGTCATTCGCTGGGAACATGGAACATACCGGCGGTTATCTCCGACGAAGAAGCATACCGATCTGCTCAACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

45.88

Weight (kDa)

4.8

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13577 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320
fragaria_vesca	FvH4_1g20510 FvH4_1g20510 FvH4_1g20510 FvH4_1g20510
malus_domestica	MD01G1033500.v1.1
prunus_persica	Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112761
rosa_laevigata	RLG00000018007
rosa_multiflora	Rmu_co8442897.1_g000001 Rmu_sc0001708.1_g000035
rosa_roxburghii	Rroxscaffold_2G00131170
rosa_rugosa	Rorug02G0182200
rosa_samantha	Rh2AG236900 Rh2BG249800 Rh2CG240900 Rh2DG244400
rosa_wichuraiana	Rw2G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	175
AciI	CCGC	6 cut(s)	144, 461, 638, 911, 1021, 1169
AclWI	GGATC	5 cut(s)	323, 558, 571, 1064, 1077
AcsI	RAATTY	1 cut(s)	1131
AcuI	CTGAAG	1 cut(s)	1056
AfaI	GTAC	2 cut(s)	135, 684
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	336
AhdI	GACNNNNNGTC	1 cut(s)	880
AjnI	CCWGG	4 cut(s)	129, 213, 419, 1065
AloI	GAACNNNNNNTCC	2 cut(s)	905, 937
AluBI	AGCT	8 cut(s)	10, 92, 241, 254, 557, 733, 1034, 1112
AluI	AGCT	8 cut(s)	10, 92, 241, 254, 557, 733, 1034, 1112
Alw26I	GTCTC	2 cut(s)	10, 773
AlwI	GGATC	5 cut(s)	323, 558, 571, 1064, 1077
AoxI	GGCC	1 cut(s)	663
ApoI	RAATTY	1 cut(s)	1131
Asp700I	GAANNNNTTC	1 cut(s)	953
AspS9I	GGNCC	2 cut(s)	206, 664
AsuHPI	GGTGA	2 cut(s)	716, 868
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	206
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BamHI	GGATCC	2 cut(s)	563, 1069
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	1074
BccI	CCATC	2 cut(s)	514, 585
BciT130I	CCWGG	4 cut(s)	131, 215, 421, 1067
BcoDI	GTCTC	2 cut(s)	10, 773
BfaI	CTAG	3 cut(s)	119, 242, 377
BglII	AGATCT	2 cut(s)	646, 762
BisI	GCNGC	2 cut(s)	145, 638
BlsI	GCNGC	2 cut(s)	146, 639
Bme1390I	CCNGG	4 cut(s)	131, 215, 421, 1067
Bme18I	GGWCC	1 cut(s)	206
BmeRI	GACNNNNNGTC	1 cut(s)	880
BmgT120I	GGNCC	2 cut(s)	206, 664
BmiI	GGNNCC	3 cut(s)	208, 565, 1071
BmrFI	CCNGG	4 cut(s)	131, 215, 421, 1067
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	370, 514
BmuI	ACTGGG	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	1074
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	2 cut(s)	41, 403
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	3 cut(s)	257, 428, 965
BsaAI	YACGTR	1 cut(s)	968
BsaJI	CCNNGG	1 cut(s)	1065
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	1165
Bse1I	ACTGG	3 cut(s)	24, 174, 1017
Bse3DI	GCAATG	2 cut(s)	372, 390
BseBI	CCWGG	4 cut(s)	131, 215, 421, 1067
BseDI	CCNNGG	1 cut(s)	1065
BseGI	GGATG	5 cut(s)	44, 529, 596, 919, 940
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	2 cut(s)	372, 390
BseMII	CTCAG	3 cut(s)	174, 216, 903
BseNI	ACTGG	3 cut(s)	24, 174, 1017
BseRI	GAGGAG	2 cut(s)	322, 861
BseYI	CCCAGC	1 cut(s)	1147
BshFI	GGCC	1 cut(s)	665
BsiSI	CCGG	1 cut(s)	1166
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	10, 773
BsmI	GAATGC	2 cut(s)	601, 1003
BsnI	GGCC	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	164
Bsp143I	GATC	8 cut(s)	230, 328, 563, 646, 762, 916, 1069, 1196
BspACI	CCGC	6 cut(s)	144, 461, 638, 911, 1021, 1169
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	3 cut(s)	175, 215, 902
BspLI	GGNNCC	3 cut(s)	208, 565, 1071
BspPI	GGATC	5 cut(s)	323, 558, 571, 1064, 1077
BspT104I	TTCGAA	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	372, 390
BsrFI	RCCGGY	1 cut(s)	1165
BsrI	ACTGG	3 cut(s)	24, 174, 1017
BssAI	RCCGGY	1 cut(s)	1165
BssECI	CCNNGG	1 cut(s)	1065
BssMI	GATC	8 cut(s)	230, 328, 563, 646, 762, 916, 1069, 1196
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	4 cut(s)	131, 215, 421, 1067
Bst4CI	ACNGT	3 cut(s)	37, 62, 1209
Bst6I	CTCTTC	7 cut(s)	213, 299, 383, 702, 846, 1032, 1044
BstBAI	YACGTR	1 cut(s)	968
BstBI	TTCGAA	1 cut(s)	164
BstDEI	CTNAG	3 cut(s)	183, 202, 889
BstF5I	GGATG	5 cut(s)	44, 529, 596, 919, 940
BstKTI	GATC	8 cut(s)	233, 331, 566, 649, 765, 919, 1072, 1199
BstMAI	GTCTC	2 cut(s)	10, 773
BstMBI	GATC	8 cut(s)	230, 328, 563, 646, 762, 916, 1069, 1196
BstNI	CCWGG	4 cut(s)	131, 215, 421, 1067
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	4 cut(s)	129, 213, 419, 1065
BstSNI	TACGTA	1 cut(s)	968
BstV2I	GAAGAC	1 cut(s)	1074
BstX2I	RGATCY	4 cut(s)	563, 646, 762, 1069
BstXI	CCANNNNNNTGG	1 cut(s)	1012
BstYI	RGATCY	4 cut(s)	563, 646, 762, 1069
BsuRI	GGCC	1 cut(s)	665
BtsCI	GGATG	5 cut(s)	44, 529, 596, 919, 940
BtsIMutI	CAGTG	2 cut(s)	553, 1005
Cfr10I	RCCGGY	1 cut(s)	1165
Cfr13I	GGNCC	2 cut(s)	206, 664
Csp6I	GTAC	2 cut(s)	134, 683
CviAII	CATG	7 cut(s)	141, 316, 337, 433, 587, 740, 1155
CviQI	GTAC	2 cut(s)	134, 683
DdeI	CTNAG	3 cut(s)	183, 202, 889
DpnI	GATC	8 cut(s)	232, 330, 565, 648, 764, 918, 1071, 1198
DpnII	GATC	8 cut(s)	230, 328, 563, 646, 762, 916, 1069, 1196
DriI	GACNNNNNGTC	1 cut(s)	880
Eam1104I	CTCTTC	7 cut(s)	213, 299, 383, 702, 846, 1032, 1044
Eam1105I	GACNNNNNGTC	1 cut(s)	880
EarI	CTCTTC	7 cut(s)	213, 299, 383, 702, 846, 1032, 1044
Eco105I	TACGTA	1 cut(s)	968
Eco32I	GATATC	2 cut(s)	225, 1026
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	1056
EcoO109I	RGGNCCY	2 cut(s)	206, 664
EcoRII	CCWGG	4 cut(s)	129, 213, 419, 1065
EcoRV	GATATC	2 cut(s)	225, 1026
FaeI	CATG	7 cut(s)	144, 319, 340, 436, 590, 743, 1158
FatI	CATG	7 cut(s)	140, 315, 336, 432, 586, 739, 1154
FauNDI	CATATG	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	145, 638
FokI	GGATG	5 cut(s)	31, 536, 603, 926, 947
Fsp4HI	GCNGC	2 cut(s)	145, 638
FspBI	CTAG	3 cut(s)	119, 242, 377
GluI	GCNGC	2 cut(s)	145, 638
GsaI	CCCAGC	1 cut(s)	1151
GsuI	CTGGAG	2 cut(s)	41, 403
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	1 cut(s)	1166
Hin1II	CATG	7 cut(s)	144, 319, 340, 436, 590, 743, 1158
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	5 cut(s)	86, 161, 551, 602, 823
HpaII	CCGG	1 cut(s)	1166
HphI	GGTGA	2 cut(s)	716, 868
Hpy166II	GTNNAC	2 cut(s)	65, 176
Hpy188I	TCNGA	8 cut(s)	33, 85, 184, 476, 519, 892, 1030, 1180
Hpy188III	TCNNGA	5 cut(s)	204, 228, 606, 770, 944
Hpy8I	GTNNAC	2 cut(s)	65, 176
Hpy99I	CGWCG	1 cut(s)	1184
HpyAV	CCTTC	2 cut(s)	220, 1115
HpyCH4III	ACNGT	3 cut(s)	37, 62, 1209
HpyCH4IV	ACGT	2 cut(s)	658, 967
HpyCH4V	TGCA	4 cut(s)	383, 743, 868, 1001
HpyF3I	CTNAG	3 cut(s)	183, 202, 889
HpySE526I	ACGT	2 cut(s)	658, 967
Hsp92II	CATG	7 cut(s)	144, 319, 340, 436, 590, 743, 1158
Kzo9I	GATC	8 cut(s)	230, 328, 563, 646, 762, 916, 1069, 1196
LweI	GCATC	2 cut(s)	370, 514
MaeI	CTAG	3 cut(s)	119, 242, 377
MaeII	ACGT	2 cut(s)	658, 967
MaeIII	GTNAC	3 cut(s)	56, 339, 506
MalI	GATC	8 cut(s)	232, 330, 565, 648, 764, 918, 1071, 1198
MboI	GATC	8 cut(s)	230, 328, 563, 646, 762, 916, 1069, 1196
MflI	RGATCY	4 cut(s)	563, 646, 762, 1069
MluCI	AATT	6 cut(s)	273, 697, 789, 952, 1087, 1131
MmeI	TCCRAC	2 cut(s)	426, 1203
MnlI	CCTC	7 cut(s)	119, 300, 403, 655, 839, 847, 925
MroXI	GAANNNNTTC	1 cut(s)	953
MseI	TTAA	4 cut(s)	267, 453, 531, 696
MspI	CCGG	1 cut(s)	1166
MspR9I	CCNGG	4 cut(s)	131, 215, 421, 1067
Mva1269I	GAATGC	2 cut(s)	601, 1003
MvaI	CCWGG	4 cut(s)	131, 215, 421, 1067
NdeI	CATATG	1 cut(s)	870
NdeII	GATC	8 cut(s)	230, 328, 563, 646, 762, 916, 1069, 1196
NlaIII	CATG	7 cut(s)	144, 319, 340, 436, 590, 743, 1158
NlaIV	GGNNCC	3 cut(s)	208, 565, 1071
NmuCI	GTSAC	2 cut(s)	56, 339
NspI	RCATGY	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	164
PciI	ACATGT	1 cut(s)	336
PctI	GAATGC	2 cut(s)	601, 1003
PdmI	GAANNNNTTC	1 cut(s)	953
PfeI	GAWTC	5 cut(s)	86, 161, 551, 602, 823
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	146, 639
Ppu21I	YACGTR	1 cut(s)	968
PpuMI	RGGWCCY	1 cut(s)	206
PscI	ACATGT	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	4 cut(s)	129, 213, 419, 1065
PspFI	CCCAGC	1 cut(s)	1147
PspGI	CCWGG	4 cut(s)	129, 213, 419, 1065
PspN4I	GGNNCC	3 cut(s)	208, 565, 1071
PspPI	GGNCC	2 cut(s)	206, 664
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	4 cut(s)	563, 646, 762, 1069
RsaI	GTAC	2 cut(s)	135, 684
RsaNI	GTAC	2 cut(s)	134, 683
SaqAI	TTAA	4 cut(s)	267, 453, 531, 696
SatI	GCNGC	2 cut(s)	145, 638
Sau3AI	GATC	8 cut(s)	230, 328, 563, 646, 762, 916, 1069, 1196
Sau96I	GGNCC	2 cut(s)	206, 664
ScrFI	CCNGG	4 cut(s)	131, 215, 421, 1067
SfaNI	GCATC	2 cut(s)	370, 514
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	3 cut(s)	236, 407, 944
SmoI	CTYRAG	3 cut(s)	236, 407, 944
SnaBI	TACGTA	1 cut(s)	968
Sse9I	AATT	6 cut(s)	273, 697, 789, 952, 1087, 1131
SsiI	CCGC	6 cut(s)	144, 461, 638, 911, 1021, 1169
SspI	AATATT	2 cut(s)	471, 984
SspMI	CTAG	3 cut(s)	119, 242, 377
StyD4I	CCNGG	4 cut(s)	129, 213, 419, 1065
TaaI	ACNGT	3 cut(s)	37, 62, 1209
TaiI	ACGT	2 cut(s)	661, 970
TaqI	TCGA	6 cut(s)	153, 164, 227, 771, 924, 995
TasI	AATT	6 cut(s)	273, 697, 789, 952, 1087, 1131
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	2 cut(s)	147, 640
TfiI	GAWTC	5 cut(s)	86, 161, 551, 602, 823
Tru1I	TTAA	4 cut(s)	267, 453, 531, 696
Tru9I	TTAA	4 cut(s)	267, 453, 531, 696
TscAI	CASTG	2 cut(s)	553, 1012
TseFI	GTSAC	2 cut(s)	56, 339
Tsp45I	GTSAC	2 cut(s)	56, 339
TspDTI	ATGAA	9 cut(s)	66, 264, 401, 421, 428, 483, 782, 1062, 1073
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	2 cut(s)	553, 1012
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	1131
XceI	RCATGY	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	953
XspI	CTAG	3 cut(s)	119, 242, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.