Prupe.6G191000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0006271
Physical Location & Seq
Reverse (-)
19806522 .. 19813967
7446 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G191000.3

Sequence Viewer

Length: 1212 bp
ATGGAAGAGTTGAGGAAGCTGGAAGAGGTACAGAGAATGCTGACGTTCGTACAATCTCGAGGCATTCCAACGACGTCGTCCCCTGACGACTGTAGTTGCTTTCTTACTAAGCTCATCCTCCTCCTGGTACAACCATGTGGAGAACTTGACTTGGGCAAAAAGTGCAGTTTGGTTTCTGAATATATGCCAAAGATTTCTGCTGCATTTCTTGATGAAGCATCCAAATGGCTTAATGGAGAAGGCTATGAAGAAAGGTCTGTTGAAAATGCTTTGCAGCTTGCCTGTAGCCATAAGCCTGAGTCTAGCTCATTGGACAATAGTTATGAAGAAATGGCTATGGTTGGACTGGACGCAATGCAACGAGCAAATTCTACCCTTGAAGATTTTTGCAGATCTTATTTTATGTTTCATGGGATGGATATAAACAAACCACAATCAGTATTCCAATATCTACCTGTGCTTTCATTCACAGAAAGCTACATTTATCAGCTTGATCGTTTGAATGAGAAGACATTGCATGCACCAAGCAACGAAATGAACATGTTAGAAAGAGGAAGCCAGACGGAAGGTCAGTGGCTAATTTCTAGGTGTACAAACATGTTTAAAAGTGACCCATTCAGACCACTGTCATGTCTACTTGAGTGTCATGGCCTTTTGACAAAAAGGATACAAGATGAGTTTAAATCTGGAGAAGGATATTGGGCGCTGGAAAGAAAGCTTTGTTATGCACTTATAAATAAAACGGAGATCTCTGTTGAAGATGTTATAAAGGCAATTAATCAGAAGTCCTTCGATTATCGAGTGCTGAATCTTTTACTGTACCAGTTGAGAGGAGAAGAGGTTAATGAGTTGCATATGGAGTTTCTATCAATCTCAGAATTCCTAGTTGAGGTAGCTGATGATCTGTTTGACTATGAGGAAGATGTTATAGAAAATAACTTCAATATATTGCGCATGTTTGTCAGAACATATGGAGCGTGTGCCCCAACTGTGCTGGCAAAATACATAGCTGAGGCTGAAGAGAAGTATAACAATTTACTGAAAATGCTGGATCCTCAGCTGTCCTTGAATTACCGGAGAAGATGCGTAGAAGCAACTAAGGAAGGAGGGAATATGTCTGCACATCCTCTTGGAACATGGAGTATACCACCTCTAATACTAGATGAGGAATTTTATCGATCCAGTCTGTTAGATTCGAAGACGCAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

46.4

Weight (kDa)

4.82

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 734, 767
AatII GACGTC 1 cut(s) 77
Acc16I TGCGCA 1 cut(s) 953
AccI GTMKAC 2 cut(s) 634, 1144
AclWI GGATC 3 cut(s) 1046, 1059, 1173
AcsI RAATTY 3 cut(s) 367, 878, 1169
AcuI CTGAAG 1 cut(s) 1038
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 5 cut(s) 30, 51, 129, 592, 821
AfiI CCNNNNNNNGG 2 cut(s) 124, 889
AflIII ACRYGT 2 cut(s) 540, 597
AgsI TTSAA 6 cut(s) 263, 380, 502, 758, 943, 1069
AhdI GACNNNNNGTC 1 cut(s) 567
AjnI CCWGG 1 cut(s) 123
AlwI GGATC 3 cut(s) 1046, 1059, 1173
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 649
ApeKI GCWGC 2 cut(s) 200, 274
ApoI RAATTY 3 cut(s) 367, 878, 1169
AseI ATTAAT 1 cut(s) 777
Asp700I GAANNNNTTC 1 cut(s) 788
AspLEI GCGC 2 cut(s) 706, 954
AsuII TTCGAA 1 cut(s) 1196
AvaI CYCGRG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 985
BamHI GGATCC 1 cut(s) 1051
BbsI GAAGAC 2 cut(s) 515, 1205
BbvCI CCTCAGC 2 cut(s) 1011, 1056
BbvI GCAGC 2 cut(s) 187, 286
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 660
BfaI CTAG 4 cut(s) 303, 585, 884, 1160
BfmI CTRYAG 2 cut(s) 91, 283
BfoI RGCGCY 1 cut(s) 707
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 2 cut(s) 392, 747
BisI GCNGC 2 cut(s) 201, 275
BlsI GCNGC 2 cut(s) 202, 276
Bme1390I CCNGG 1 cut(s) 125
BmeRI GACNNNNNGTC 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 1053
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 227, 1073
BoxI GACNNNNGTC 1 cut(s) 625
BpiI GAAGAC 2 cut(s) 515, 1205
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpmI CTGGAG 1 cut(s) 708
Bpu10I CCTNAGC 2 cut(s) 1011, 1056
Bpu14I TTCGAA 1 cut(s) 1196
BpuEI CTTGAG 1 cut(s) 659
Bsa29I ATCGAT 1 cut(s) 1177
BsaHI GRCGYC 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 1074
BsaXI ACNNNNNCTCC 2 cut(s) 825, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 889
Bse1I ACTGG 3 cut(s) 351, 823, 1182
Bse3DI GCAATG 2 cut(s) 360, 512
BseBI CCWGG 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 1177
BseGI GGATG 4 cut(s) 114, 218, 420, 1123
BseLI CCNNNNNNNGG 2 cut(s) 124, 889
BseMI GCAATG 2 cut(s) 360, 512
BseMII CTCAG 4 cut(s) 288, 888, 1002, 1070
BseNI ACTGG 3 cut(s) 351, 823, 1182
BseRI GAGGAG 2 cut(s) 110, 846
BseSI GKGCMC 1 cut(s) 985
BseXI GCAGC 2 cut(s) 187, 286
BsgI GTGCAG 2 cut(s) 184, 1104
BshFI GGCC 1 cut(s) 651
BshVI ATCGAT 1 cut(s) 1177
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 1075
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 124, 889
BsmFI GGGAC 1 cut(s) 64
BsmI GAATGC 2 cut(s) 42, 63
BsnI GGCC 1 cut(s) 651
BsoBI CYCGRG 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 1196
Bsp1286I GDGCHC 1 cut(s) 985
Bsp1407I TGTACA 1 cut(s) 590
Bsp143I GATC 6 cut(s) 392, 493, 747, 901, 1051, 1178
BspANI GGCC 1 cut(s) 651
BspCNI CTCAG 4 cut(s) 289, 887, 1003, 1069
BspDI ATCGAT 1 cut(s) 1177
BspLI GGNNCC 1 cut(s) 1053
BspPI GGATC 3 cut(s) 1046, 1059, 1173
BspT104I TTCGAA 1 cut(s) 1196
BsrDI GCAATG 2 cut(s) 360, 512
BsrGI TGTACA 1 cut(s) 590
BsrI ACTGG 3 cut(s) 351, 823, 1182
BssMI GATC 6 cut(s) 392, 493, 747, 901, 1051, 1178
BssNAI GTATAC 1 cut(s) 1145
BssNI GRCGYC 1 cut(s) 74
Bst1107I GTATAC 1 cut(s) 1145
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 4 cut(s) 92, 627, 819, 991
Bst6I CTCTTC 3 cut(s) 18, 831, 1014
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 590
BstBI TTCGAA 1 cut(s) 1196
BstC8I GCNNGC 3 cut(s) 279, 519, 996
BstDEI CTNAG 6 cut(s) 108, 297, 874, 1011, 1056, 1098
BstENI CCTNNNNNAGG 1 cut(s) 887
BstF5I GGATG 4 cut(s) 114, 218, 420, 1123
BstH2I RGCGCY 1 cut(s) 707
BstHHI GCGC 2 cut(s) 706, 954
BstKTI GATC 6 cut(s) 395, 496, 750, 904, 1054, 1181
BstMBI GATC 6 cut(s) 392, 493, 747, 901, 1051, 1178
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 4 cut(s) 521, 544, 601, 958
BstPAI GACNNNNGTC 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 2 cut(s) 91, 283
BstSLI GKGCMC 1 cut(s) 985
BstV1I GCAGC 2 cut(s) 187, 286
BstV2I GAAGAC 2 cut(s) 515, 1205
BstX2I RGATCY 3 cut(s) 392, 747, 1051
BstYI RGATCY 3 cut(s) 392, 747, 1051
BstZ17I GTATAC 1 cut(s) 1145
Bsu15I ATCGAT 1 cut(s) 1177
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 1 cut(s) 651
BsuTUI ATCGAT 1 cut(s) 1177
BtsCI GGATG 4 cut(s) 114, 218, 420, 1123
BtsIMutI CAGTG 2 cut(s) 578, 623
Cac8I GCNNGC 3 cut(s) 279, 519, 996
CfoI GCGC 2 cut(s) 706, 954
ClaI ATCGAT 1 cut(s) 1177
CseI GACGC 1 cut(s) 359
Csp6I GTAC 5 cut(s) 29, 50, 128, 591, 820
CviAII CATG 9 cut(s) 135, 410, 518, 541, 598, 630, 647, 955, 1137
CviQI GTAC 5 cut(s) 29, 50, 128, 591, 820
DdeI CTNAG 6 cut(s) 108, 297, 874, 1011, 1056, 1098
DpnI GATC 6 cut(s) 394, 495, 749, 903, 1053, 1180
DpnII GATC 6 cut(s) 392, 493, 747, 901, 1051, 1178
DraI TTTAAA 2 cut(s) 604, 682
DriI GACNNNNNGTC 1 cut(s) 567
Eam1104I CTCTTC 3 cut(s) 18, 831, 1014
Eam1105I GACNNNNNGTC 1 cut(s) 567
EarI CTCTTC 3 cut(s) 18, 831, 1014
Eco57I CTGAAG 1 cut(s) 1038
Eco88I CYCGRG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoRI GAATTC 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 9 cut(s) 138, 413, 521, 544, 601, 633, 650, 958, 1140
FaqI GGGAC 1 cut(s) 64
FatI CATG 9 cut(s) 134, 409, 517, 540, 597, 629, 646, 954, 1136
FauNDI CATATG 2 cut(s) 855, 970
FblI GTMKAC 2 cut(s) 634, 1144
Fnu4HI GCNGC 2 cut(s) 201, 275
FokI GGATG 4 cut(s) 101, 205, 427, 1110
Fsp4HI GCNGC 2 cut(s) 201, 275
FspBI CTAG 4 cut(s) 303, 585, 884, 1160
FspI TGCGCA 1 cut(s) 953
GlaI GCGC 2 cut(s) 705, 953
GluI GCNGC 2 cut(s) 201, 275
GsuI CTGGAG 1 cut(s) 708
HaeII RGCGCY 1 cut(s) 707
HaeIII GGCC 1 cut(s) 651
HapII CCGG 1 cut(s) 1075
HgaI GACGC 1 cut(s) 359
HhaI GCGC 2 cut(s) 706, 954
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 9 cut(s) 138, 413, 521, 544, 601, 633, 650, 958, 1140
Hin6I GCGC 2 cut(s) 704, 952
HinP1I GCGC 2 cut(s) 704, 952
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 3 cut(s) 299, 808, 1193
HpaII CCGG 1 cut(s) 1075
Hpy166II GTNNAC 3 cut(s) 591, 635, 1145
Hpy188I TCNGA 5 cut(s) 178, 620, 783, 877, 965
Hpy188III TCNNGA 3 cut(s) 57, 209, 687
Hpy8I GTNNAC 3 cut(s) 591, 635, 1145
Hpy99I CGWCG 2 cut(s) 76, 79
HpyAV CCTTC 5 cut(s) 233, 560, 686, 799, 1097
HpyCH4III ACNGT 4 cut(s) 92, 627, 819, 991
HpyCH4IV ACGT 2 cut(s) 44, 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 6 cut(s) 108, 297, 874, 1011, 1056, 1098
HpySE526I ACGT 2 cut(s) 44, 74
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 9 cut(s) 138, 413, 521, 544, 601, 633, 650, 958, 1140
HspAI GCGC 2 cut(s) 704, 952
Kzo9I GATC 6 cut(s) 392, 493, 747, 901, 1051, 1178
LmnI GCTCC 1 cut(s) 974
Lsp1109I GCAGC 2 cut(s) 187, 286
LweI GCATC 2 cut(s) 227, 1073
MaeI CTAG 4 cut(s) 303, 585, 884, 1160
MaeII ACGT 2 cut(s) 44, 74
MaeIII GTNAC 1 cut(s) 608
MalI GATC 6 cut(s) 394, 495, 749, 903, 1053, 1180
MboI GATC 6 cut(s) 392, 493, 747, 901, 1051, 1178
MflI RGATCY 3 cut(s) 392, 747, 1051
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 7 cut(s) 367, 579, 774, 878, 1033, 1069, 1169
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 92, 322
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 5 cut(s) 231, 603, 681, 777, 843
MslI CAYNNNNRTG 2 cut(s) 223, 628
MspA1I CMGCKG 1 cut(s) 1060
MspI CCGG 1 cut(s) 1075
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 2 cut(s) 42, 63
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeI CATATG 2 cut(s) 855, 970
NdeII GATC 6 cut(s) 392, 493, 747, 901, 1051, 1178
NlaIII CATG 9 cut(s) 138, 413, 521, 544, 601, 633, 650, 958, 1140
NlaIV GGNNCC 1 cut(s) 1053
NmuCI GTSAC 1 cut(s) 608
NsbI TGCGCA 1 cut(s) 953
NspI RCATGY 4 cut(s) 521, 544, 601, 958
NspV TTCGAA 1 cut(s) 1196
PaeI GCATGC 1 cut(s) 521
PaeR7I CTCGAG 1 cut(s) 57
PciI ACATGT 2 cut(s) 540, 597
PctI GAATGC 2 cut(s) 42, 63
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 2 cut(s) 808, 1193
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 2 cut(s) 202, 276
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PscI ACATGT 2 cut(s) 540, 597
PshAI GACNNNNGTC 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 777
PsiI TTATAA 2 cut(s) 734, 767
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 1053
PsuI RGATCY 3 cut(s) 392, 747, 1051
PsyI GACNNNGTC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 1060
RsaI GTAC 5 cut(s) 30, 51, 129, 592, 821
RsaNI GTAC 5 cut(s) 29, 50, 128, 591, 820
RseI CAYNNNNRTG 2 cut(s) 223, 628
SaqAI TTAA 5 cut(s) 231, 603, 681, 777, 843
SatI GCNGC 2 cut(s) 201, 275
Sau3AI GATC 6 cut(s) 392, 493, 747, 901, 1051, 1178
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 2 cut(s) 227, 1073
SfcI CTRYAG 2 cut(s) 91, 283
Sfr274I CTCGAG 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 1196
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 2 cut(s) 223, 628
SmlI CTYRAG 2 cut(s) 57, 638
SmoI CTYRAG 2 cut(s) 57, 638
SphI GCATGC 1 cut(s) 521
Sse9I AATT 7 cut(s) 367, 579, 774, 878, 1033, 1069, 1169
SspMI CTAG 4 cut(s) 303, 585, 884, 1160
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 4 cut(s) 92, 627, 819, 991
TaiI ACGT 2 cut(s) 47, 77
TaqI TCGA 5 cut(s) 58, 792, 799, 1177, 1196
TasI AATT 7 cut(s) 367, 579, 774, 878, 1033, 1069, 1169
TatI WGTACW 1 cut(s) 590
TfiI GAWTC 2 cut(s) 808, 1193
Tru1I TTAA 5 cut(s) 231, 603, 681, 777, 843
Tru9I TTAA 5 cut(s) 231, 603, 681, 777, 843
TscAI CASTG 2 cut(s) 578, 630
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 2 cut(s) 200, 274
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 6 cut(s) 228, 261, 339, 398, 453, 551
TspGWI ACGGA 2 cut(s) 578, 758
TspRI CASTG 2 cut(s) 578, 630
Tth111I GACNNNGTC 1 cut(s) 76
VspI ATTAAT 1 cut(s) 777
XagI CCTNNNNNAGG 1 cut(s) 887
XapI RAATTY 3 cut(s) 367, 878, 1169
XceI RCATGY 4 cut(s) 521, 544, 601, 958
XhoI CTCGAG 1 cut(s) 57
XmiI GTMKAC 2 cut(s) 634, 1144
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 4 cut(s) 303, 585, 884, 1160
ZraI GACGTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.