Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006271

Physical Location & Seq

Genomic Coordinates Reverse (-)

67713662 .. 67720075

Gene Structure 6414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAAGAGTTAAGAAAGCTAGAAGAGGTACAGAGAACACTGACGTTTCTTCAATCGCGAGGCATCACAAATGACAATGACGACTGTAATTGCTTCCTTTCCAAGCTCACCCTCCTCCTGGTACAACCTTGTGGGGAGCTTGATTTGGAAAACAAGTGTGCTTTGGTTTCTGAGTATATGCCAAAGATATGTGCTGCAATTCTTGATGAAGCATCTAGCAACCTCACCGGCAAAGTTGCGAAAGGGGAGAGGATGTTTCTTTTAGGCTATGAAGAAAATTGTGTTGAAATTTCTTTGCCCCTTGACTTTGGCCACAAGTCAGAGTCTGGTCCATTGCAAACTAATTTTGAAGAAATAGCTATGGTGGGACTGGATGCAATGCAACGAGCAAATTCAACCCTCGAAGATTTTCTTGACGATTTGAATGAGAAGACAGTGCAAGCATCAAGCAGTGAAATGACCATTTCAGAAAGAGGAACTGCAGTGGAAGGTCATGGGAAAATTTCTCAGTTTTCAAATGTGTTTAAAAGTGATCCTTTCAGGCCACTTGAATGTCTACTTGAATCCCATGTCCTTTTGACAAAGAGAATGCAAGATGAATTCAAGTGTGGAGAAGAGTATTGGGCTCTGGAAAGAAAACTTTGTCATGCACTTAATAATAAATTGCAGGTCAATGAGTTGCACATGGAATTTCTGTCTGTCTCAGAATTCCTAGTTGAGGTAGCTGATGATTTGTTTGACTACGAGGAGGATGTATTAGAAAATAATTTCAATATATTGCGCATGTTTGTCAGAATATATGGAGCTTCTGCCCCTACAGTGCTGGCAAAATACATAACTGAGGCTGAAGAGAAGTACAATCAATTGTTGAAAGCGTTGGATCCTCAGCTGTCTATGCATTACCAGAGAAGATGTGTAGAAGCCACTAAAGAAGGTAAATCTGCCAGCATTAATGTTCAGTCTGTGAAAGTAGATCCTCGTTTCCTTAACGCTTTGTTGATGTTTCTTGAATTTGAAATTTCTAGGAGGGAATATGTCAGGGCATCCTCTCGGAACATGGAGCATACCACCTCTAATATTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

41.24

Weight (kDa)

4.85

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13577 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320
fragaria_vesca	FvH4_1g20510 FvH4_1g20510 FvH4_1g20510 FvH4_1g20510
malus_domestica	MD01G1033500.v1.1
prunus_persica	Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112761
rosa_laevigata	RLG00000018007
rosa_multiflora	Rmu_co8442897.1_g000001 Rmu_sc0001708.1_g000035
rosa_roxburghii	Rroxscaffold_2G00131170
rosa_rugosa	Rorug02G0182200
rosa_samantha	Rh2AG236900 Rh2BG249800 Rh2CG240900 Rh2DG244400
rosa_wichuraiana	Rw2G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	782
Acc36I	ACCTGC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	556
AccII	CGCG	1 cut(s)	58
AclWI	GGATC	4 cut(s)	527, 875, 888, 968
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	8 cut(s)	288, 391, 501, 599, 689, 707, 1010, 1017
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	3 cut(s)	30, 123, 857
AfiI	CCNNNNNNNGG	2 cut(s)	118, 718
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	7 cut(s)	19, 106, 139, 359, 725, 806, 889
AluI	AGCT	7 cut(s)	19, 106, 139, 359, 725, 806, 889
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	4 cut(s)	527, 875, 888, 968
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	310, 542
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	8 cut(s)	288, 391, 501, 599, 689, 707, 1010, 1017
AseI	ATTAAT	1 cut(s)	951
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	100, 217
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	880
BanII	GRGCYC	1 cut(s)	628
BbsI	GAAGAC	1 cut(s)	437
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	4 cut(s)	20, 216, 713, 1023
BfmI	CTRYAG	2 cut(s)	480, 816
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	5 cut(s)	72, 221, 364, 452, 1052
BpiI	GAAGAC	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	885
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 718
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	2 cut(s)	332, 384
BseBI	CCWGG	1 cut(s)	119
BseGI	GGATG	4 cut(s)	258, 379, 757, 1043
BseLI	CCNNNNNNNGG	2 cut(s)	118, 718
BseMI	GCAATG	2 cut(s)	332, 384
BseMII	CTCAG	5 cut(s)	162, 521, 717, 831, 899
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	2 cut(s)	104, 761
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	312, 544
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	2 cut(s)	118, 718
BsmAI	GTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	312, 544
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	532, 880, 973
Bsp68I	TCGCGA	1 cut(s)	58
BspANI	GGCC	2 cut(s)	312, 544
BspCNI	CTCAG	5 cut(s)	163, 520, 716, 832, 898
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	882
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	4 cut(s)	527, 875, 888, 968
BsrDI	GCAATG	2 cut(s)	332, 384
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	3 cut(s)	532, 880, 973
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	86, 436, 820
Bst6I	CTCTTC	3 cut(s)	18, 609, 843
BstC8I	GCNNGC	3 cut(s)	441, 825, 946
BstDEI	CTNAG	5 cut(s)	171, 507, 703, 840, 885
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	4 cut(s)	258, 379, 757, 1043
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	3 cut(s)	535, 883, 976
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	3 cut(s)	532, 880, 973
BstMWI	GCNNNNNNNGC	1 cut(s)	895
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	480, 816
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	2 cut(s)	880, 973
BstYI	RGATCY	2 cut(s)	880, 973
BsuRI	GGCC	2 cut(s)	312, 544
BtsCI	GGATG	4 cut(s)	258, 379, 757, 1043
BtsI	GCAGTG	2 cut(s)	457, 489
BtsIMutI	CAGTG	5 cut(s)	38, 441, 457, 489, 825
BtuMI	TCGCGA	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	441, 825, 946
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	783
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	29, 122, 856
CviAII	CATG	6 cut(s)	494, 569, 647, 685, 784, 1057
CviQI	GTAC	3 cut(s)	29, 122, 856
DdeI	CTNAG	5 cut(s)	171, 507, 703, 840, 885
DpnI	GATC	3 cut(s)	534, 882, 975
DpnII	GATC	3 cut(s)	532, 880, 973
DraI	TTTAAA	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	18, 609, 843
EarI	CTCTTC	3 cut(s)	18, 609, 843
Eco24I	GRGCYC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	867
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoRI	GAATTC	2 cut(s)	599, 707
EcoRII	CCWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	900
EcoT38I	GRGCYC	1 cut(s)	628
FaeI	CATG	6 cut(s)	497, 572, 650, 688, 787, 1060
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 520, 552
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	6 cut(s)	493, 568, 646, 684, 783, 1056
FblI	GTMKAC	1 cut(s)	556
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	4 cut(s)	265, 386, 764, 1030
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	4 cut(s)	20, 216, 713, 1023
FspI	TGCGCA	1 cut(s)	782
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	312, 544
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	783
Hin1II	CATG	6 cut(s)	497, 572, 650, 688, 787, 1060
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HinfI	GANTC	2 cut(s)	323, 563
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	100, 217
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	6 cut(s)	172, 322, 469, 706, 794, 1053
Hpy188III	TCNNGA	5 cut(s)	57, 203, 413, 629, 1007
Hpy8I	GTNNAC	1 cut(s)	557
HpyAV	CCTTC	2 cut(s)	482, 926
HpyCH4III	ACNGT	3 cut(s)	86, 436, 820
HpyCH4IV	ACGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	895
HpyF3I	CTNAG	5 cut(s)	171, 507, 703, 840, 885
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	6 cut(s)	497, 572, 650, 688, 787, 1060
HspAI	GCGC	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	532, 880, 973
LmnI	GCTCC	3 cut(s)	136, 803, 1060
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	5 cut(s)	72, 221, 364, 452, 1052
MaeI	CTAG	4 cut(s)	20, 216, 713, 1023
MaeII	ACGT	1 cut(s)	44
MalI	GATC	3 cut(s)	534, 882, 975
MboI	GATC	3 cut(s)	532, 880, 973
MfeI	CAATTG	1 cut(s)	863
MflI	RGATCY	2 cut(s)	880, 973
MhlI	GDGCHC	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	312
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	858
Mox20I	TGGCCA	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	900
MroXI	GAANNNNTTC	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	5 cut(s)	11, 525, 654, 951, 987
MslI	CAYNNNNRTG	1 cut(s)	550
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	889
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	895
NdeII	GATC	3 cut(s)	532, 880, 973
NlaIII	CATG	6 cut(s)	497, 572, 650, 688, 787, 1060
NlaIV	GGNNCC	1 cut(s)	882
NruI	TCGCGA	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	782
NsiI	ATGCAT	1 cut(s)	900
NspI	RCATGY	1 cut(s)	787
PctI	GAATGC	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	563
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PshBI	ATTAAT	1 cut(s)	951
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	882
PspPI	GGNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	880, 973
PvuII	CAGCTG	1 cut(s)	889
RruI	TCGCGA	1 cut(s)	58
RsaI	GTAC	3 cut(s)	30, 123, 857
RsaNI	GTAC	3 cut(s)	29, 122, 856
RseI	CAYNNNNRTG	1 cut(s)	550
SaqAI	TTAA	5 cut(s)	11, 525, 654, 951, 987
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	3 cut(s)	532, 880, 973
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	5 cut(s)	72, 221, 364, 452, 1052
SfcI	CTRYAG	2 cut(s)	480, 816
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	550
SspI	AATATT	1 cut(s)	1078
SspMI	CTAG	4 cut(s)	20, 216, 713, 1023
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	3 cut(s)	86, 436, 820
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	402
TatI	WGTACW	1 cut(s)	855
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	5 cut(s)	11, 525, 654, 951, 987
Tru9I	TTAA	5 cut(s)	11, 525, 654, 951, 987
TscAI	CASTG	5 cut(s)	45, 441, 457, 489, 825
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	222, 285, 612
TspRI	CASTG	5 cut(s)	45, 441, 457, 489, 825
VpaK11BI	GGWCC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	951
XagI	CCTNNNNNAGG	1 cut(s)	716
XapI	RAATTY	8 cut(s)	288, 391, 501, 599, 689, 707, 1010, 1017
XceI	RCATGY	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	4 cut(s)	20, 216, 713, 1023
Zsp2I	ATGCAT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.