Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006271

Physical Location & Seq

Genomic Coordinates Forward (+)

24935917 .. 24942353

Gene Structure 6437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG244400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAAGAGTTAAGAAAGCTAGAAGAGGTACAGAGAACACTGACGTTTCTTCAATCGCGAGGCATCACAAATGACAATGACGACTGTAATTGCTTCCTTTCCAAGCTCACCCTCCTCCTGGTACAACCTTGTGGGGAGCTTGATTTGGAAAACAAGTGTGCTTTGGTTTCTGAGTATATGCCAAAGATATCTGCTGCAATTCTTGATGAAGCATCTAGCAACCTCACCGGCAAAGGCCATGAAGAAAATTGTGTTGAAAATTCTTTGCCCCTTGACTTTGGCCACAAGTCAGAGTCTGGTCCATTGCAAACTAATTTTGAAAAAATAGCTATGGTGGGACTGGACGCAATGCAACGAGCAAATTCAACCCTCGAAGATTTTTGCAGGTCTTATTTTATGTTTCATGGCATGGATATAAACAAACCACAATCAGTATTCCAATATCTTCCTATGCTTTCATTTGTAGAAAGTTACATTTATCAGCTTGACGATTTGAATGAGAAGACAGTGCAAGCATCAAGCAGTGAAATGACCATTTCAGAAAGAGGAACTGCAGTGGAAGGTCATGGGAAAATTTCTCAGTTTTCAAATGTGTTTAAAAGTGATCCTTTCAGGCCACTCGAATGTCTACTTGAATCCCATGTCCTTTTGACAAAGAGAATGCAAGATGAATTCAAGTGTGGAGAAGAGTATTGGGCTCTGGAAAGAAAACTTTGTCATGCACTTAATAATAAATTGCAGATCTCAGTTGAAGATGCAATGAAGGCAATTCATCTCAAATCCTTTGATTATCGAGTGCTGAATCTTTTACTGTACCAGTTGAGAGGAGAAAAGGTCAATGAGTTGCACATGGAATTTCTGTCTGTCTCAGAATTCCTAGTTGAGGTAGCTGATGATTTGTTTGACTATGAGGAGGATGTATTAGAAAATAATTTCAATATATTGCGCATGTTTGTCAGAATATATGGAGCTTCTGCCCCTACAGTGCTGGCAAAATACATAACTGAGGCTGAAGAGAAGTACAATCAAGTGTTGAAAGTGTTGGATCCTCAGCTGTCTGTGCATTACCAGAGAAGATGTGTAGAAGCCACTAAAGAAGGAGGGAATATGTCAGGGCATCCTCTCGGAACATGGAGCATACCACCTCTAATATTAGATGAGGAATTCTATCGATGCAGTCTATTAGATACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

45.58

Weight (kDa)

4.85

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13577 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320
fragaria_vesca	FvH4_1g20510 FvH4_1g20510 FvH4_1g20510 FvH4_1g20510
malus_domestica	MD01G1033500.v1.1
prunus_persica	Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112761
rosa_laevigata	RLG00000018007
rosa_multiflora	Rmu_co8442897.1_g000001 Rmu_sc0001708.1_g000035
rosa_roxburghii	Rroxscaffold_2G00131170
rosa_rugosa	Rorug02G0182200
rosa_samantha	Rh2AG236900 Rh2BG249800 Rh2CG240900 Rh2DG244400
rosa_wichuraiana	Rw2G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	947
Acc36I	ACCTGC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	628
AccII	CGCG	1 cut(s)	58
AclWI	GGATC	3 cut(s)	599, 1040, 1053
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	7 cut(s)	259, 361, 573, 671, 854, 872, 1163
AcuI	CTGAAG	1 cut(s)	1032
AfaI	GTAC	4 cut(s)	30, 123, 815, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	118, 883
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	8 cut(s)	19, 106, 139, 329, 484, 890, 971, 1054
AluI	AGCT	8 cut(s)	19, 106, 139, 329, 484, 890, 971, 1054
Alw26I	GTCTC	1 cut(s)	871
AlwI	GGATC	3 cut(s)	599, 1040, 1053
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	3 cut(s)	235, 280, 614
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	7 cut(s)	259, 361, 573, 671, 854, 872, 1163
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	100, 217
AvaII	GGWCC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	1045
BanII	GRGCYC	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	509
BbvCI	CCTCAGC	1 cut(s)	1050
BbvI	GCAGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	871
BfaI	CTAG	3 cut(s)	20, 216, 878
BfmI	CTRYAG	2 cut(s)	552, 981
BfuAI	ACCTGC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	741
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	1047
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	6 cut(s)	72, 221, 524, 745, 1126, 1163
BpiI	GAAGAC	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	1050
Bsa29I	ATCGAT	1 cut(s)	1171
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 883
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	345, 817
Bse3DI	GCAATG	3 cut(s)	302, 354, 765
BseBI	CCWGG	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	1171
BseGI	GGATG	2 cut(s)	922, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	118, 883
BseMI	GCAATG	3 cut(s)	302, 354, 765
BseMII	CTCAG	6 cut(s)	162, 593, 759, 882, 996, 1064
BseNI	ACTGG	2 cut(s)	345, 817
BseRI	GAGGAG	3 cut(s)	104, 840, 926
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	237, 282, 616
BshVI	ATCGAT	1 cut(s)	1171
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	118, 883
BsmAI	GTCTC	1 cut(s)	871
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	3 cut(s)	237, 282, 616
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	604, 741, 1045
Bsp68I	TCGCGA	1 cut(s)	58
BspANI	GGCC	3 cut(s)	237, 282, 616
BspCNI	CTCAG	6 cut(s)	163, 592, 758, 881, 997, 1063
BspDI	ATCGAT	1 cut(s)	1171
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	1047
BspMAI	CTGCAG	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	599, 1040, 1053
BsrDI	GCAATG	3 cut(s)	302, 354, 765
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	345, 817
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	3 cut(s)	604, 741, 1045
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	4 cut(s)	86, 508, 813, 985
Bst6I	CTCTTC	3 cut(s)	18, 681, 1008
BstC8I	GCNNGC	2 cut(s)	513, 990
BstDEI	CTNAG	6 cut(s)	171, 579, 745, 868, 1005, 1050
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	2 cut(s)	922, 1117
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	3 cut(s)	607, 744, 1048
BstMAI	GTCTC	1 cut(s)	871
BstMBI	GATC	3 cut(s)	604, 741, 1045
BstMWI	GCNNNNNNNGC	2 cut(s)	764, 1060
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	952
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	552, 981
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	2 cut(s)	741, 1045
BstYI	RGATCY	2 cut(s)	741, 1045
Bsu15I	ATCGAT	1 cut(s)	1171
BsuRI	GGCC	3 cut(s)	237, 282, 616
BsuTUI	ATCGAT	1 cut(s)	1171
BtsCI	GGATG	2 cut(s)	922, 1117
BtsI	GCAGTG	2 cut(s)	529, 561
BtsIMutI	CAGTG	5 cut(s)	38, 513, 529, 561, 990
BtuMI	TCGCGA	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	513, 990
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	948
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	1171
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	4 cut(s)	29, 122, 814, 1021
CviAII	CATG	9 cut(s)	239, 404, 409, 566, 641, 719, 850, 949, 1131
CviQI	GTAC	4 cut(s)	29, 122, 814, 1021
DdeI	CTNAG	6 cut(s)	171, 579, 745, 868, 1005, 1050
DpnI	GATC	3 cut(s)	606, 743, 1047
DpnII	GATC	3 cut(s)	604, 741, 1045
DraI	TTTAAA	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	3 cut(s)	18, 681, 1008
EarI	CTCTTC	3 cut(s)	18, 681, 1008
Eco24I	GRGCYC	1 cut(s)	700
Eco32I	GATATC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	1032
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoRI	GAATTC	3 cut(s)	671, 872, 1163
EcoRII	CCWGG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	700
FaeI	CATG	9 cut(s)	242, 407, 412, 569, 644, 722, 853, 952, 1134
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	9 cut(s)	238, 403, 408, 565, 640, 718, 849, 948, 1130
FblI	GTMKAC	1 cut(s)	628
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	929, 1104
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	3 cut(s)	20, 216, 878
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	237, 282, 616
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	948
Hin1II	CATG	9 cut(s)	242, 407, 412, 569, 644, 722, 853, 952, 1134
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HinfI	GANTC	3 cut(s)	293, 635, 802
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	100, 217
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188I	TCNGA	6 cut(s)	172, 292, 541, 871, 959, 1127
Hpy188III	TCNNGA	3 cut(s)	57, 203, 701
Hpy8I	GTNNAC	1 cut(s)	629
HpyAV	CCTTC	3 cut(s)	554, 757, 1091
HpyCH4III	ACNGT	4 cut(s)	86, 508, 813, 985
HpyCH4IV	ACGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	764, 1060
HpyF3I	CTNAG	6 cut(s)	171, 579, 745, 868, 1005, 1050
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	9 cut(s)	242, 407, 412, 569, 644, 722, 853, 952, 1134
HspAI	GCGC	1 cut(s)	946
Kzo9I	GATC	3 cut(s)	604, 741, 1045
LmnI	GCTCC	3 cut(s)	136, 968, 1134
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	6 cut(s)	72, 221, 524, 745, 1126, 1163
MaeI	CTAG	3 cut(s)	20, 216, 878
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	3 cut(s)	606, 743, 1047
MboI	GATC	3 cut(s)	604, 741, 1045
MflI	RGATCY	2 cut(s)	741, 1045
MhlI	GDGCHC	1 cut(s)	700
MlsI	TGGCCA	1 cut(s)	282
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	1023
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	3 cut(s)	11, 597, 726
MslI	CAYNNNNRTG	1 cut(s)	622
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	1054
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	764, 1060
NdeII	GATC	3 cut(s)	604, 741, 1045
NlaIII	CATG	9 cut(s)	242, 407, 412, 569, 644, 722, 853, 952, 1134
NlaIV	GGNNCC	1 cut(s)	1047
NruI	TCGCGA	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	947
NspI	RCATGY	1 cut(s)	952
PctI	GAATGC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	635, 802
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	1047
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	741, 1045
PvuII	CAGCTG	1 cut(s)	1054
RruI	TCGCGA	1 cut(s)	58
RsaI	GTAC	4 cut(s)	30, 123, 815, 1022
RsaNI	GTAC	4 cut(s)	29, 122, 814, 1021
RseI	CAYNNNNRTG	1 cut(s)	622
SaqAI	TTAA	3 cut(s)	11, 597, 726
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	3 cut(s)	604, 741, 1045
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	6 cut(s)	72, 221, 524, 745, 1126, 1163
SfcI	CTRYAG	2 cut(s)	552, 981
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	622
SspI	AATATT	1 cut(s)	1152
SspMI	CTAG	3 cut(s)	20, 216, 878
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	4 cut(s)	86, 508, 813, 985
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	4 cut(s)	372, 621, 793, 1171
TatI	WGTACW	1 cut(s)	1020
TfiI	GAWTC	2 cut(s)	635, 802
Tru1I	TTAA	3 cut(s)	11, 597, 726
Tru9I	TTAA	3 cut(s)	11, 597, 726
TscAI	CASTG	5 cut(s)	45, 513, 529, 561, 990
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	7 cut(s)	222, 255, 392, 447, 684, 761, 776
TspRI	CASTG	5 cut(s)	45, 513, 529, 561, 990
VpaK11BI	GGWCC	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	881
XapI	RAATTY	7 cut(s)	259, 361, 573, 671, 854, 872, 1163
XceI	RCATGY	1 cut(s)	952
XmiI	GTMKAC	1 cut(s)	628
XspI	CTAG	3 cut(s)	20, 216, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.