Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006271

Physical Location & Seq

Genomic Coordinates Reverse (-)

11583081 .. 11598305

Gene Structure 15225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1033500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGGAATTGAGGAAACTGGAAGATGTCCAGAGAATGCTGACGTTTTTACAATCTCGAGGCCTTCTAACGACGTCGTCGCATGACGACTCGAGTTCCTTTCTCGCCAAGCTCATCCTCTTCCTAGAACAACCATGTGGAGAGCTTGATTTGGGGAAAAAGTGCAGTTTGGTTTCAGAATATATGCCAAGGATTTCTGCTGCATTTCTTGAGGAAGCATCCAAATGCATTACCGGCGAAGGCCATGGAGAAAATTGTGAAAATGCTTTGCAGTTTGACTGTGGCCATAAGCTGGAGTCTAGTTCATTGCACACTGATTTTGAAGAGATGGCTATGGTTGGACTGGACGCAATGCAACGAGCAAATTCTACCCTTGAAGATTTTTGCAGATCTTATTTTATGTTCCATGGAATGGATATAAACAAACCACAGTCAATATTCCAATATCTACCTATGCTTTCATTCACAGAAAGTTACATTTATCAGCTTGATGCTTTGAATGAGAAGACACTTCATGCAGCAAGCAGTGAATTGACCATTTCAGAAAGAGGAACTGAGGCGGAAGGTCAGTGGCTAATTGCTCGGTGTGCAAGTGCATTTAAGGGTGCGCCATTCAGACCACTGTCATGTGCACTTGAATGTCATGGCCTTTTGACAAAGAGGATGCAAGATGAGTTTAAATCTGGAGAAGAGTATTGGGCGCTGGAAAGAAAGCTTTGTTATGCACTGATGAATAAAATGGAGATAGTTGTTGAAGATGTTGTAAAGGCAATTCATCTGAAATCCTTTGATTATCGTGTGCTGAATCTTTTACTGTACCAGATTAGGGGTGAAGAGGTTGATGAGCTGCATATGGAATTTTTATCAATCTCAGAATTCCTAGTTGAGGTAGCTGATGATCTGTTTGACTATGAGGAGGATGTAATAGAAAATAGTTTCAATATATTGCGCATGTTTGTCAAAATGTATGGAGCTTCTGCACCAACTGTGCTGGCAAAATATATAGTTGAGGCTGAAGAGAAGTACAACAATTTACTGAAACGGCTCGATCCACAGCTGTCCTTGAATTACCAGAGAAGATGTGTAGAAGCAACTAAAGAGGGAGGGAGTGCGTCTGCACATCCACTCGGAGCATGGAGTATACCACCTCTAATACTAGACGAGGAATTTTATCGATCCAGTCTGTTAGATCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

45.58

Weight (kDa)

4.81

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13577 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320
fragaria_vesca	FvH4_1g20510 FvH4_1g20510 FvH4_1g20510 FvH4_1g20510
malus_domestica	MD01G1033500.v1.1
prunus_persica	Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112761
rosa_laevigata	RLG00000018007
rosa_multiflora	Rmu_co8442897.1_g000001 Rmu_sc0001708.1_g000035
rosa_roxburghii	Rroxscaffold_2G00131170
rosa_rugosa	Rorug02G0182200
rosa_samantha	Rh2AG236900 Rh2BG249800 Rh2CG240900 Rh2DG244400
rosa_wichuraiana	Rw2G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	77
Acc16I	TGCGCA	1 cut(s)	950
AccB7I	CCANNNNNTGG	2 cut(s)	292, 412
AccI	GTMKAC	1 cut(s)	1141
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	2 cut(s)	1043, 1170
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	4 cut(s)	364, 857, 875, 1166
AcuI	CTGAAG	1 cut(s)	1035
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	818, 1025
AfiI	CCNNNNNNNGG	4 cut(s)	292, 412, 826, 886
AgsI	TTSAA	7 cut(s)	323, 377, 499, 638, 755, 940, 1066
AluBI	AGCT	9 cut(s)	112, 145, 292, 487, 715, 847, 893, 974, 1057
AluI	AGCT	9 cut(s)	112, 145, 292, 487, 715, 847, 893, 974, 1057
Alw21I	GWGCWC	1 cut(s)	634
Alw44I	GTGCAC	1 cut(s)	630
AlwI	GGATC	2 cut(s)	1043, 1170
Ama87I	CYCGRG	2 cut(s)	57, 91
AoxI	GGCC	4 cut(s)	61, 241, 283, 646
ApaLI	GTGCAC	1 cut(s)	630
ApeKI	GCWGC	3 cut(s)	200, 518, 847
ApoI	RAATTY	4 cut(s)	364, 857, 875, 1166
AspLEI	GCGC	3 cut(s)	610, 703, 951
AsuHPI	GGTGA	1 cut(s)	842
AvaI	CYCGRG	2 cut(s)	57, 91
BaeGI	GKGCMC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	3 cut(s)	187, 530, 834
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	1058
BfaI	CTAG	4 cut(s)	125, 300, 881, 1157
BfoI	RGCGCY	1 cut(s)	704
BglII	AGATCT	1 cut(s)	389
BisI	GCNGC	3 cut(s)	201, 519, 848
BlsI	GCNGC	3 cut(s)	202, 520, 849
BmeT110I	CYCGRG	2 cut(s)	57, 91
BmsI	GCATC	3 cut(s)	227, 481, 654
BoxI	GACNNNNGTC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	512
BpmI	CTGGAG	2 cut(s)	314, 705
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	1174
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	188, 244, 406
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 412, 826, 886
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	24, 348, 1179
Bse3DI	GCAATG	2 cut(s)	305, 357
BseCI	ATCGAT	1 cut(s)	1174
BseDI	CCNNGG	3 cut(s)	188, 244, 406
BseGI	GGATG	5 cut(s)	114, 218, 669, 925, 1120
BseLI	CCNNNNNNNGG	4 cut(s)	292, 412, 826, 886
BseMI	GCAATG	2 cut(s)	305, 357
BseMII	CTCAG	2 cut(s)	546, 885
BseNI	ACTGG	3 cut(s)	24, 348, 1179
BseRI	GAGGAG	1 cut(s)	929
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	3 cut(s)	187, 530, 834
BsgI	GTGCAG	3 cut(s)	184, 963, 1101
BshFI	GGCC	4 cut(s)	63, 243, 285, 648
BshVI	ATCGAT	1 cut(s)	1174
BsiHKAI	GWGCWC	1 cut(s)	634
BsiHKCI	CYCGRG	2 cut(s)	57, 91
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	4 cut(s)	292, 412, 826, 886
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	4 cut(s)	63, 243, 285, 648
BsoBI	CYCGRG	2 cut(s)	57, 91
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	5 cut(s)	389, 898, 1048, 1175, 1189
Bsp19I	CCATGG	2 cut(s)	244, 406
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	4 cut(s)	63, 243, 285, 648
BspCNI	CTCAG	2 cut(s)	547, 884
BspDI	ATCGAT	1 cut(s)	1174
BspPI	GGATC	2 cut(s)	1043, 1170
BsrDI	GCAATG	2 cut(s)	305, 357
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	24, 348, 1179
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	188, 244, 406
BssMI	GATC	5 cut(s)	389, 898, 1048, 1175, 1189
BssNAI	GTATAC	1 cut(s)	1142
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	3 cut(s)	188, 244, 406
Bst1107I	GTATAC	1 cut(s)	1142
Bst4CI	ACNGT	5 cut(s)	281, 432, 624, 816, 988
Bst6I	CTCTTC	5 cut(s)	125, 318, 684, 828, 1011
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	523, 993
BstDEI	CTNAG	2 cut(s)	555, 871
BstDSI	CCRYGG	2 cut(s)	244, 406
BstENI	CCTNNNNNAGG	1 cut(s)	884
BstF5I	GGATG	5 cut(s)	114, 218, 669, 925, 1120
BstH2I	RGCGCY	1 cut(s)	704
BstHHI	GCGC	3 cut(s)	610, 703, 951
BstKTI	GATC	5 cut(s)	392, 901, 1051, 1178, 1192
BstMBI	GATC	5 cut(s)	389, 898, 1048, 1175, 1189
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 587
BstNSI	RCATGY	1 cut(s)	955
BstPAI	GACNNNNGTC	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	634
BstV1I	GCAGC	3 cut(s)	187, 530, 834
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BstZ17I	GTATAC	1 cut(s)	1142
Bsu15I	ATCGAT	1 cut(s)	1174
BsuRI	GGCC	4 cut(s)	63, 243, 285, 648
BsuTUI	ATCGAT	1 cut(s)	1174
BtgI	CCRYGG	2 cut(s)	244, 406
BtsCI	GGATG	5 cut(s)	114, 218, 669, 925, 1120
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	5 cut(s)	312, 532, 575, 620, 725
Cac8I	GCNNGC	2 cut(s)	523, 993
CfoI	GCGC	3 cut(s)	610, 703, 951
Cfr10I	RCCGGY	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	1174
CseI	GACGC	2 cut(s)	356, 1101
Csp6I	GTAC	2 cut(s)	817, 1024
CviAII	CATG	9 cut(s)	83, 135, 245, 407, 515, 627, 644, 952, 1134
CviQI	GTAC	2 cut(s)	817, 1024
DdeI	CTNAG	2 cut(s)	555, 871
DpnI	GATC	5 cut(s)	391, 900, 1050, 1177, 1191
DpnII	GATC	5 cut(s)	389, 898, 1048, 1175, 1189
DraI	TTTAAA	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	5 cut(s)	125, 318, 684, 828, 1011
EarI	CTCTTC	5 cut(s)	125, 318, 684, 828, 1011
EciI	GGCGGA	1 cut(s)	575
Eco130I	CCWWGG	3 cut(s)	188, 244, 406
Eco147I	AGGCCT	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	1035
Eco88I	CYCGRG	2 cut(s)	57, 91
EcoNI	CCTNNNNNAGG	1 cut(s)	884
EcoRI	GAATTC	1 cut(s)	875
EcoT14I	CCWWGG	3 cut(s)	188, 244, 406
EcoT22I	ATGCAT	1 cut(s)	230
ErhI	CCWWGG	3 cut(s)	188, 244, 406
FaeI	CATG	9 cut(s)	86, 138, 248, 410, 518, 630, 647, 955, 1137
FatI	CATG	9 cut(s)	82, 134, 244, 406, 514, 626, 643, 951, 1133
FauNDI	CATATG	1 cut(s)	852
FblI	GTMKAC	1 cut(s)	1141
Fnu4HI	GCNGC	3 cut(s)	201, 519, 848
FokI	GGATG	5 cut(s)	101, 205, 676, 932, 1107
Fsp4HI	GCNGC	3 cut(s)	201, 519, 848
FspBI	CTAG	4 cut(s)	125, 300, 881, 1157
FspI	TGCGCA	1 cut(s)	950
GlaI	GCGC	3 cut(s)	609, 702, 950
GluI	GCNGC	3 cut(s)	201, 519, 848
GsuI	CTGGAG	2 cut(s)	314, 705
HaeII	RGCGCY	1 cut(s)	704
HaeIII	GGCC	4 cut(s)	63, 243, 285, 648
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	2 cut(s)	356, 1101
HhaI	GCGC	3 cut(s)	610, 703, 951
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	9 cut(s)	86, 138, 248, 410, 518, 630, 647, 955, 1137
Hin6I	GCGC	3 cut(s)	608, 701, 949
HinP1I	GCGC	3 cut(s)	608, 701, 949
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	3 cut(s)	89, 296, 805
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	2 cut(s)	632, 1142
Hpy188I	TCNGA	7 cut(s)	178, 544, 617, 780, 874, 1130, 1194
Hpy188III	TCNNGA	4 cut(s)	31, 57, 209, 684
Hpy8I	GTNNAC	2 cut(s)	632, 1142
Hpy99I	CGWCG	3 cut(s)	76, 79, 82
HpyAV	CCTTC	3 cut(s)	74, 233, 557
HpyCH4III	ACNGT	5 cut(s)	281, 432, 624, 816, 988
HpyCH4IV	ACGT	2 cut(s)	44, 74
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 587
HpyF3I	CTNAG	2 cut(s)	555, 871
HpySE526I	ACGT	2 cut(s)	44, 74
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	9 cut(s)	86, 138, 248, 410, 518, 630, 647, 955, 1137
HspAI	GCGC	3 cut(s)	608, 701, 949
Kzo9I	GATC	5 cut(s)	389, 898, 1048, 1175, 1189
LmnI	GCTCC	2 cut(s)	971, 1130
Lsp1109I	GCAGC	3 cut(s)	187, 530, 834
LweI	GCATC	3 cut(s)	227, 481, 654
MaeI	CTAG	4 cut(s)	125, 300, 881, 1157
MaeII	ACGT	2 cut(s)	44, 74
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	5 cut(s)	391, 900, 1050, 1177, 1191
MboI	GATC	5 cut(s)	389, 898, 1048, 1175, 1189
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	285
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	83, 305
MmeI	TCCRAC	1 cut(s)	319
Mox20I	TGGCCA	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	2 cut(s)	600, 678
MslI	CAYNNNNRTG	3 cut(s)	223, 625, 637
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	1057
MspI	CCGG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	234, 587
NcoI	CCATGG	2 cut(s)	244, 406
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	5 cut(s)	389, 898, 1048, 1175, 1189
NlaIII	CATG	9 cut(s)	86, 138, 248, 410, 518, 630, 647, 955, 1137
NsbI	TGCGCA	1 cut(s)	950
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	955
PaeR7I	CTCGAG	2 cut(s)	57, 91
PceI	AGGCCT	1 cut(s)	63
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	805
PflFI	GACNNNGTC	1 cut(s)	76
PflMI	CCANNNNNTGG	2 cut(s)	292, 412
PkrI	GCNGC	3 cut(s)	202, 520, 849
PleI	GAGTC	2 cut(s)	83, 304
PpsI	GAGTC	2 cut(s)	83, 304
PshAI	GACNNNNGTC	1 cut(s)	622
PspXI	VCTCGAGB	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	389
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	1057
RsaI	GTAC	2 cut(s)	818, 1025
RsaNI	GTAC	2 cut(s)	817, 1024
RseI	CAYNNNNRTG	3 cut(s)	223, 625, 637
SaqAI	TTAA	2 cut(s)	600, 678
SatI	GCNGC	3 cut(s)	201, 519, 848
Sau3AI	GATC	5 cut(s)	389, 898, 1048, 1175, 1189
SchI	GAGTC	2 cut(s)	83, 305
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	3 cut(s)	227, 481, 654
Sfr274I	CTCGAG	2 cut(s)	57, 91
SlaI	CTCGAG	2 cut(s)	57, 91
SmiMI	CAYNNNNRTG	3 cut(s)	223, 625, 637
SmlI	CTYRAG	3 cut(s)	57, 91, 209
SmoI	CTYRAG	3 cut(s)	57, 91, 209
SseBI	AGGCCT	1 cut(s)	63
SsiI	CCGC	1 cut(s)	560
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	4 cut(s)	125, 300, 881, 1157
StuI	AGGCCT	1 cut(s)	63
StyI	CCWWGG	3 cut(s)	188, 244, 406
TaaI	ACNGT	5 cut(s)	281, 432, 624, 816, 988
TaiI	ACGT	2 cut(s)	47, 77
TaqI	TCGA	4 cut(s)	58, 92, 1047, 1174
TatI	WGTACW	1 cut(s)	1023
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	2 cut(s)	600, 678
Tru9I	TTAA	2 cut(s)	600, 678
TscAI	CASTG	5 cut(s)	319, 532, 575, 627, 732
TseI	GCWGC	3 cut(s)	200, 518, 847
TspDTI	ATGAA	5 cut(s)	294, 450, 503, 746, 764
TspRI	CASTG	5 cut(s)	319, 532, 575, 627, 732
Tth111I	GACNNNGTC	1 cut(s)	76
Van91I	CCANNNNNTGG	2 cut(s)	292, 412
VneI	GTGCAC	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	884
XapI	RAATTY	4 cut(s)	364, 857, 875, 1166
XceI	RCATGY	1 cut(s)	955
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1131
XhoI	CTCGAG	2 cut(s)	57, 91
XmiI	GTMKAC	1 cut(s)	1141
XspI	CTAG	4 cut(s)	125, 300, 881, 1157
ZraI	GACGTC	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.