Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006271

Physical Location & Seq

Genomic Coordinates Forward (+)

12698931 .. 12704653

Gene Structure 5723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAAGAGTTGAGAAAACTAGAAGAGGTACAGAGAACACTGACGTTTCTCCAATCTCGAAGCATCACATCGACGTCGTCTAATGACAGTGACGACTGTAATTGCTTCCTCTCCAAGCTCACCCTCCTCCTGGTACAACCTTGTGGGGAGCTTGATTTGGAACAGAAGTGTGCTTTGGTTTCTGGGTATATGCCAAAGATATCTGCTGCAATTCTTGATGAAGCATCTGGCAAGCTCACTGGCAAAGGCTATGAAGAAAATTATGTTGAAAAATCTTCGCTCTTTGACTTTGGCCACAAGTCAAAGTCTGGTCCATTGCAAACTAATTTTGAAGAAATAGCTATGGTTGGACTGCATGCAATGCAACGAGCAAATTCAACCCTTGAAGATTTTTGCAGGTCTTATTTTATGTTTCATGGCATGGATATTAACAACCCACAATCAGTATTCCAATATCTCCCTATGCTTTCATTTGTAGAAAGTTACATTTATCAGCTTGACGATTTGAATGAAAAGATGGTGCAAGCATCAAGCAGCGAAATGATAATTTCAGAAACAGGAGTTGAATTGGGAGGTCATGGGCAAATTTCTCAGTCTTCAAATGTGTTCAAAAGTTATCCTTTCAGGCCACTGGAATATTTACTTGAATCCCATGGCCTTTTGACAAAGAGAATGCAAGATGAATTTAAGTCCGGAGAAGAGTATTGGGCTTTGGAAAGAAAGCTTTGTCATGCACTTCAGAATAAATTGCAGATCTCCGTTGAAGACGTAATAAAGGCAATTCATCTCAAATCCTTTGATTATCGAGTGCTGAATCTTTTACTGTACGAGTTGCGAGGAGAAAAGATTGATGAGCTGCACATGGAATTTCTATCTGTCTCAGAATTCCTAGTTGAGGTAGCTGATGATCTGTTTGACTACGAGGAGGATGTATTAGAAAATAATTTCAATATATTGCGCATGTTTGTCAGAATATATGGAGCTTCTGCCCCGACGGTGCTGGCAAAATACATAACGGAGGCCGAAGAGAAGTACAATCAAGTGTTGAAAGCATTGGATCCTCAGCTGTCCTTGCATTACCAGAGAAGATGTGTAGAAGCCACTGAAGAAGGAGGGAATGTGTCGGGGTATCCTCTCGGAACATGGAGCATACCACCTCTAATACTAGACGAGGAATTCTGTCGATCCAGTCTCTTACATACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

45.94

Weight (kDa)

4.81

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13577 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320 AT5G10320
fragaria_vesca	FvH4_1g20510 FvH4_1g20510 FvH4_1g20510 FvH4_1g20510
malus_domestica	MD01G1033500.v1.1
prunus_persica	Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1 Prupe.6G191000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112761
rosa_laevigata	RLG00000018007
rosa_multiflora	Rmu_co8442897.1_g000001 Rmu_sc0001708.1_g000035
rosa_roxburghii	Rroxscaffold_2G00131170
rosa_rugosa	Rorug02G0182200
rosa_samantha	Rh2AG236900 Rh2BG249800 Rh2CG240900 Rh2DG244400
rosa_wichuraiana	Rw2G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	77
Acc16I	TGCGCA	1 cut(s)	959
Acc36I	ACCTGC	1 cut(s)	387
AccIII	TCCGGA	1 cut(s)	692
AclWI	GGATC	3 cut(s)	1052, 1065, 1179
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	6 cut(s)	373, 585, 683, 866, 884, 1175
AcuI	CTGAAG	2 cut(s)	722, 1125
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	4 cut(s)	30, 135, 827, 1034
AfiI	CCNNNNNNNGG	2 cut(s)	130, 895
AjnI	CCWGG	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
Alw26I	GTCTC	2 cut(s)	883, 1196
AlwI	GGATC	3 cut(s)	1052, 1065, 1179
Aor13HI	TCCGGA	1 cut(s)	692
AoxI	GGCC	4 cut(s)	292, 626, 655, 1020
ApeKI	GCWGC	3 cut(s)	206, 534, 856
ApoI	RAATTY	6 cut(s)	373, 585, 683, 866, 884, 1175
AspLEI	GCGC	1 cut(s)	960
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	1057
BbsI	GAAGAC	2 cut(s)	588, 771
BbvCI	CCTCAGC	1 cut(s)	1062
BbvI	GCAGC	3 cut(s)	193, 546, 843
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	1140
BcoDI	GTCTC	2 cut(s)	883, 1196
BfaI	CTAG	3 cut(s)	20, 890, 1166
BfuAI	ACCTGC	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	1140
BglII	AGATCT	1 cut(s)	753
BisI	GCNGC	3 cut(s)	207, 535, 857
BlsI	GCNGC	3 cut(s)	208, 536, 858
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	1059
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	3 cut(s)	72, 233, 536
BpiI	GAAGAC	2 cut(s)	588, 771
Bpu10I	CCTNAGC	1 cut(s)	1062
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	652
BsaWI	WCCGGW	1 cut(s)	692
BsaXI	ACNNNNNCTCC	2 cut(s)	1104, 1134
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 895
Bse1I	ACTGG	3 cut(s)	244, 636, 1188
Bse3DI	GCAATG	2 cut(s)	314, 366
BseAI	TCCGGA	1 cut(s)	692
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	1 cut(s)	934
BseLI	CCNNNNNNNGG	2 cut(s)	130, 895
BseMI	GCAATG	2 cut(s)	314, 366
BseMII	CTCAG	3 cut(s)	605, 894, 1076
BseNI	ACTGG	3 cut(s)	244, 636, 1188
BseRI	GAGGAG	3 cut(s)	116, 852, 938
BseXI	GCAGC	3 cut(s)	193, 546, 843
BsgI	GTGCAG	1 cut(s)	842
BshFI	GGCC	4 cut(s)	294, 628, 657, 1022
BsiSI	CCGG	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	130, 895
BsmAI	GTCTC	2 cut(s)	883, 1196
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	4 cut(s)	294, 628, 657, 1022
Bsp13I	TCCGGA	1 cut(s)	692
Bsp143I	GATC	4 cut(s)	753, 907, 1057, 1184
Bsp19I	CCATGG	1 cut(s)	652
BspANI	GGCC	4 cut(s)	294, 628, 657, 1022
BspCNI	CTCAG	3 cut(s)	604, 893, 1075
BspEI	TCCGGA	1 cut(s)	692
BspLI	GGNNCC	1 cut(s)	1059
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	3 cut(s)	1052, 1065, 1179
BsrDI	GCAATG	2 cut(s)	314, 366
BsrI	ACTGG	3 cut(s)	244, 636, 1188
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	4 cut(s)	753, 907, 1057, 1184
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	4 cut(s)	89, 98, 825, 997
Bst6I	CTCTTC	3 cut(s)	18, 693, 1020
BstACI	GRCGYC	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	4 cut(s)	233, 357, 525, 1002
BstDEI	CTNAG	3 cut(s)	591, 880, 1062
BstDSI	CCRYGG	1 cut(s)	652
BstENI	CCTNNNNNAGG	1 cut(s)	893
BstF5I	GGATG	1 cut(s)	934
BstHHI	GCGC	1 cut(s)	960
BstKTI	GATC	4 cut(s)	756, 910, 1060, 1187
BstMAI	GTCTC	2 cut(s)	883, 1196
BstMBI	GATC	4 cut(s)	753, 907, 1057, 1184
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 1072
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	2 cut(s)	359, 964
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	193, 546, 843
BstV2I	GAAGAC	2 cut(s)	588, 771
BstX2I	RGATCY	2 cut(s)	753, 1057
BstYI	RGATCY	2 cut(s)	753, 1057
BsuI	GTATCC	1 cut(s)	1140
BsuRI	GGCC	4 cut(s)	294, 628, 657, 1022
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	1 cut(s)	934
BtsIMutI	CAGTG	5 cut(s)	38, 94, 237, 629, 1101
BveI	ACCTGC	1 cut(s)	387
Cac8I	GCNNGC	4 cut(s)	233, 357, 525, 1002
CfoI	GCGC	1 cut(s)	960
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	4 cut(s)	29, 134, 826, 1033
CviAII	CATG	9 cut(s)	356, 416, 421, 578, 653, 731, 862, 961, 1143
CviQI	GTAC	4 cut(s)	29, 134, 826, 1033
DdeI	CTNAG	3 cut(s)	591, 880, 1062
DpnI	GATC	4 cut(s)	755, 909, 1059, 1186
DpnII	GATC	4 cut(s)	753, 907, 1057, 1184
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	3 cut(s)	18, 693, 1020
EarI	CTCTTC	3 cut(s)	18, 693, 1020
Eco130I	CCWWGG	1 cut(s)	652
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	2 cut(s)	722, 1125
EcoNI	CCTNNNNNAGG	1 cut(s)	893
EcoRI	GAATTC	2 cut(s)	884, 1175
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	9 cut(s)	359, 419, 424, 581, 656, 734, 865, 964, 1146
FalI	AAGNNNNNCTT	2 cut(s)	604, 636
FatI	CATG	9 cut(s)	355, 415, 420, 577, 652, 730, 861, 960, 1142
Fnu4HI	GCNGC	3 cut(s)	207, 535, 857
FokI	GGATG	1 cut(s)	941
Fsp4HI	GCNGC	3 cut(s)	207, 535, 857
FspBI	CTAG	3 cut(s)	20, 890, 1166
FspI	TGCGCA	1 cut(s)	959
GlaI	GCGC	1 cut(s)	959
GluI	GCNGC	3 cut(s)	207, 535, 857
HaeIII	GGCC	4 cut(s)	294, 628, 657, 1022
HapII	CCGG	1 cut(s)	693
HhaI	GCGC	1 cut(s)	960
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	9 cut(s)	359, 419, 424, 581, 656, 734, 865, 964, 1146
Hin6I	GCGC	1 cut(s)	958
HinP1I	GCGC	1 cut(s)	958
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	2 cut(s)	647, 814
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	5 cut(s)	553, 741, 883, 971, 1139
Hpy188III	TCNNGA	3 cut(s)	57, 215, 693
Hpy99I	CGWCG	3 cut(s)	76, 79, 997
HpyAV	CCTTC	1 cut(s)	1103
HpyCH4III	ACNGT	4 cut(s)	89, 98, 825, 997
HpyCH4IV	ACGT	3 cut(s)	44, 74, 768
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 1072
HpyF3I	CTNAG	3 cut(s)	591, 880, 1062
HpySE526I	ACGT	3 cut(s)	44, 74, 768
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	9 cut(s)	359, 419, 424, 581, 656, 734, 865, 964, 1146
HspAI	GCGC	1 cut(s)	958
Kpn2I	TCCGGA	1 cut(s)	692
Kzo9I	GATC	4 cut(s)	753, 907, 1057, 1184
LmnI	GCTCC	3 cut(s)	148, 980, 1146
Lsp1109I	GCAGC	3 cut(s)	193, 546, 843
LweI	GCATC	3 cut(s)	72, 233, 536
MaeI	CTAG	3 cut(s)	20, 890, 1166
MaeII	ACGT	3 cut(s)	44, 74, 768
MaeIII	GTNAC	2 cut(s)	89, 482
MalI	GATC	4 cut(s)	755, 909, 1059, 1186
MboI	GATC	4 cut(s)	753, 907, 1057, 1184
MflI	RGATCY	2 cut(s)	753, 1057
MlsI	TGGCCA	1 cut(s)	294
MluNI	TGGCCA	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	294
MroI	TCCGGA	1 cut(s)	692
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	429, 687
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	1066
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	361, 1072
NcoI	CCATGG	1 cut(s)	652
NdeII	GATC	4 cut(s)	753, 907, 1057, 1184
NlaIII	CATG	9 cut(s)	359, 419, 424, 581, 656, 734, 865, 964, 1146
NlaIV	GGNNCC	1 cut(s)	1059
NmuCI	GTSAC	1 cut(s)	89
NsbI	TGCGCA	1 cut(s)	959
NspI	RCATGY	2 cut(s)	359, 964
PaeI	GCATGC	1 cut(s)	359
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	647, 814
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	208, 536, 858
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	1059
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	753, 1057
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	1066
RsaI	GTAC	4 cut(s)	30, 135, 827, 1034
RsaNI	GTAC	4 cut(s)	29, 134, 826, 1033
SaqAI	TTAA	2 cut(s)	429, 687
SatI	GCNGC	3 cut(s)	207, 535, 857
Sau3AI	GATC	4 cut(s)	753, 907, 1057, 1184
Sau96I	GGNCC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	131
SfaNI	GCATC	3 cut(s)	72, 233, 536
SinI	GGWCC	1 cut(s)	311
SphI	GCATGC	1 cut(s)	359
SspI	AATATT	1 cut(s)	638
SspMI	CTAG	3 cut(s)	20, 890, 1166
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	4 cut(s)	89, 98, 825, 997
TaiI	ACGT	3 cut(s)	47, 77, 771
TaqI	TCGA	4 cut(s)	58, 71, 805, 1183
TatI	WGTACW	1 cut(s)	1032
TfiI	GAWTC	2 cut(s)	647, 814
Tru1I	TTAA	2 cut(s)	429, 687
Tru9I	TTAA	2 cut(s)	429, 687
TscAI	CASTG	5 cut(s)	45, 94, 244, 636, 1108
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	3 cut(s)	206, 534, 856
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	7 cut(s)	234, 267, 404, 459, 525, 696, 773
TspGWI	ACGGA	2 cut(s)	748, 1031
TspRI	CASTG	5 cut(s)	45, 94, 244, 636, 1108
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	893
XapI	RAATTY	6 cut(s)	373, 585, 683, 866, 884, 1175
XceI	RCATGY	2 cut(s)	359, 964
XspI	CTAG	3 cut(s)	20, 890, 1166
ZraI	GACGTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.