Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006737

Physical Location & Seq

Genomic Coordinates Reverse (-)

3445029 .. 3447278

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAGGAAGAACGGCGAGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCCAAAGTCTATTACGGCAAAGAGATCATCGGCGGCGAGTGCGTCGCAATCAAAGTCATCAACAAGGATCAAGTAATGAAGAGACCTGGAATGATGGAACAAATCAAACGCGAGATTTCAATCATGAAGCTCGTTCGTCATCCCAACATAGTTGAATTGAAAGAAGTCATGGCTACGAAGACCAAGATCTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTTTTCTGCAAAATCTCTAAAGGTAAGTTACACGAAGACGCTGCTCGTAGATATTTCCAGCAATTGATCTCAGCCGTTGATTATTGCCATAGTAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAATCTTCTTTTAGATGAGAATGGAGATTTGAAAATCTCCGATTTCGGATTATCTGCGTTACCGGAACAGATTCTTCAAGACGGATTGCTTCATACGCAGTGTGGAACTCCGGCGTATGTTGCGCCGGAGGTATTAAAGAAGAAAGGATACGACGGCGCGAAAGCTGATATCTGGTCGTGCGGCGTCGTTTTGTATGTTCTTCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATGTATCGGAAGATTTTCAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAGCGAGGAGGTTGATTTCGAAACTCCTCGTTGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGCCTTGGCTCCGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCAAAGCAGCAAAAACAACGAAGAAGAAGAAGAAGACGGAGATTGTGAAAATCAAACAGAGCCGATATCGCCGAAATTCTTCAACGCTTTCGAATTCATATCCTCGATGTCTTCCGGATTTGACTTATCGAGCTTGTTCGAGAGCAAGAGGAAAGTGCAATCGGTGTTTACGTCACGGTCGTCGGCGACGGAGGTAATGGAGAAGATAGAAACGGTTACGAAGGAGATGAACATGAAAGTGAAGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGTTGTCGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATATCGGTGGTGGAGTTTTGCAAATCGGCGGGAGATACTTTGGAGTACGATAGGTTATACGAAGAAGAAGTACGGCCGGCGTTAAACGACATCGTCTGGTCATGGCACGGTGATAATAATAACACTTCTTCCGAGGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030001 GO:0035556 GO:0036211 GO:0042538 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

445

Amino Acids

50.87

Weight (kDa)

6.05

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 267	7e-76	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 262	4.1e-36	Protein tyrosine and serine/threonine kinase
NAF	PF03822	309 - 367	6.2e-20	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10930 AT5G25110
fragaria_vesca	FvH4_2g41050
malus_domestica	MD15G1039300.v1.1 MD17G1222800.v1.1
prunus_persica	Prupe.1G392900_v2.0.a1 Prupe.3G097900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133031 RchiOBHm_Chr6g0299521
rosa_laevigata	RLG00000011420 RLG00000019304
rosa_multiflora	Rmu_co8431815.1_g000001 Rmu_sc0006821.1_g000008 Rmu_sc0008770.1_g000015
rosa_roxburghii	Rroxscaffold_2G00111560 Rroxscaffold_7G00168590
rosa_rugosa	Rorug02G0309200 Rorug06G0289500
rosa_samantha	Rh2BG367400 Rh2CG344800 Rh2DG384400 Rh6AG400800 Rh6BG409400 Rh6DG401800
rosa_wichuraiana	Rw2G029410 Rw6G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	683
AccII	CGCG	3 cut(s)	180, 402, 575
AccIII	TCCGGA	3 cut(s)	712, 801, 968
AciI	CCGC	8 cut(s)	102, 285, 597, 683, 698, 818, 1169, 1223
AclWI	GGATC	3 cut(s)	144, 746, 773
AcoI	YGGCCR	1 cut(s)	1268
AcsI	RAATTY	3 cut(s)	692, 929, 947
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	3 cut(s)	35, 1241, 1266
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	5 cut(s)	199, 292, 581, 827, 987
AluI	AGCT	5 cut(s)	199, 292, 581, 827, 987
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	3 cut(s)	144, 746, 773
Aor13HI	TCCGGA	3 cut(s)	712, 801, 968
AoxI	GGCC	1 cut(s)	1268
ApeKI	GCWGC	2 cut(s)	332, 861
ApoI	RAATTY	3 cut(s)	692, 929, 947
Asp700I	GAANNNNTTC	4 cut(s)	486, 674, 809, 932
AspLEI	GCGC	3 cut(s)	541, 575, 1189
AsuHPI	GGTGA	1 cut(s)	1316
AsuII	TTCGAA	2 cut(s)	734, 945
BarI	GAAGNNNNNNTAC	4 cut(s)	548, 580, 1248, 1280
BbsI	GAAGAC	4 cut(s)	254, 333, 894, 957
BbvI	GCAGC	2 cut(s)	319, 873
BccI	CCATC	3 cut(s)	34, 157, 1117
BceAI	ACGGC	9 cut(s)	29, 100, 350, 586, 619, 685, 805, 1182, 1283
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	1190
BfuI	GTATCC	1 cut(s)	557
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	5 cut(s)	103, 286, 333, 598, 862
BlsI	GCNGC	5 cut(s)	104, 287, 334, 599, 863
Bme1390I	CCNGG	1 cut(s)	156
BmiI	GGNNCC	2 cut(s)	64, 800
BmrFI	CCNGG	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	1156
BpiI	GAAGAC	4 cut(s)	254, 333, 894, 957
Bpu14I	TTCGAA	2 cut(s)	734, 945
BsaBI	GATNNNNATC	3 cut(s)	188, 648, 756
BsaHI	GRCGYC	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	701, 794, 1326
BsaWI	WCCGGW	4 cut(s)	478, 712, 801, 968
Bse118I	RCCGGY	1 cut(s)	1270
Bse8I	GATNNNNATC	3 cut(s)	188, 648, 756
BseAI	TCCGGA	3 cut(s)	712, 801, 968
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	701, 794, 1326
BseGI	GGATG	2 cut(s)	208, 632
BseJI	GATNNNNATC	3 cut(s)	188, 648, 756
BseMII	CTCAG	2 cut(s)	375, 405
BseRI	GAGGAG	2 cut(s)	731, 736
BseX3I	CGGCCG	1 cut(s)	1268
BseXI	GCAGC	2 cut(s)	319, 873
Bsh1236I	CGCG	3 cut(s)	180, 402, 575
Bsh1285I	CGRYCG	2 cut(s)	1034, 1271
BshFI	GGCC	1 cut(s)	1270
BsiEI	CGRYCG	2 cut(s)	1034, 1271
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	1270
Bso31I	GGTCTC	1 cut(s)	145
Bsp119I	TTCGAA	2 cut(s)	734, 945
Bsp13I	TCCGGA	3 cut(s)	712, 801, 968
Bsp143I	GATC	8 cut(s)	93, 136, 255, 357, 403, 751, 757, 765
Bsp68I	TCGCGA	1 cut(s)	402
BspACI	CCGC	8 cut(s)	102, 285, 597, 683, 698, 818, 1169, 1223
BspANI	GGCC	1 cut(s)	1270
BspCNI	CTCAG	2 cut(s)	374, 406
BspEI	TCCGGA	3 cut(s)	712, 801, 968
BspFNI	CGCG	3 cut(s)	180, 402, 575
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	64, 800
BspPI	GGATC	3 cut(s)	144, 746, 773
BspT104I	TTCGAA	2 cut(s)	734, 945
BspTNI	GGTCTC	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	1270
BssAI	RCCGGY	1 cut(s)	1270
BssECI	CCNNGG	3 cut(s)	701, 794, 1326
BssMI	GATC	8 cut(s)	93, 136, 255, 357, 403, 751, 757, 765
BssNI	GRCGYC	1 cut(s)	600
BssT1I	CCWWGG	1 cut(s)	794
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	4 cut(s)	1032, 1069, 1155, 1304
Bst6I	CTCTTC	2 cut(s)	143, 1091
BstACI	GRCGYC	1 cut(s)	600
BstBI	TTCGAA	2 cut(s)	734, 945
BstC8I	GCNNGC	2 cut(s)	290, 1272
BstDEI	CTNAG	2 cut(s)	361, 414
BstDSI	CCRYGG	1 cut(s)	701
BstF5I	GGATG	2 cut(s)	208, 632
BstFNI	CGCG	3 cut(s)	180, 402, 575
BstH2I	RGCGCY	1 cut(s)	1190
BstHHI	GCGC	3 cut(s)	541, 575, 1189
BstKTI	GATC	8 cut(s)	96, 139, 258, 360, 406, 754, 760, 768
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	8 cut(s)	93, 136, 255, 357, 403, 751, 757, 765
BstMCI	CGRYCG	2 cut(s)	1034, 1271
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 511, 536, 922
BstNI	CCWGG	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	1156
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	3 cut(s)	180, 402, 575
BstV1I	GCAGC	2 cut(s)	319, 873
BstV2I	GAAGAC	4 cut(s)	254, 333, 894, 957
BstX2I	RGATCY	3 cut(s)	255, 751, 765
BstYI	RGATCY	3 cut(s)	255, 751, 765
BstZI	CGGCCG	1 cut(s)	1268
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	1270
BtgI	CCRYGG	1 cut(s)	701
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	208, 632
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	521
BtuMI	TCGCGA	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	290, 1272
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	3 cut(s)	541, 575, 1189
Cfr10I	RCCGGY	1 cut(s)	1270
CseI	GACGC	3 cut(s)	100, 338, 589
Csp6I	GTAC	3 cut(s)	34, 1240, 1265
CviAII	CATG	5 cut(s)	193, 238, 268, 1087, 1296
CviQI	GTAC	3 cut(s)	34, 1240, 1265
DdeI	CTNAG	2 cut(s)	361, 414
DpnI	GATC	8 cut(s)	95, 138, 257, 359, 405, 753, 759, 767
DpnII	GATC	8 cut(s)	93, 136, 255, 357, 403, 751, 757, 765
DraI	TTTAAA	1 cut(s)	1114
EaeI	YGGCCR	1 cut(s)	1268
EagI	CGGCCG	1 cut(s)	1268
Eam1104I	CTCTTC	2 cut(s)	143, 1091
EarI	CTCTTC	2 cut(s)	143, 1091
EciI	GGCGGA	3 cut(s)	687, 807, 1184
EclXI	CGGCCG	1 cut(s)	1268
Eco130I	CCWWGG	1 cut(s)	794
Eco31I	GGTCTC	1 cut(s)	145
Eco32I	GATATC	3 cut(s)	586, 921, 1197
Eco52I	CGGCCG	1 cut(s)	1268
EcoRI	GAATTC	1 cut(s)	947
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	3 cut(s)	586, 921, 1197
EcoT14I	CCWWGG	1 cut(s)	794
ErhI	CCWWGG	1 cut(s)	794
FaeI	CATG	5 cut(s)	196, 241, 271, 1090, 1299
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	5 cut(s)	192, 237, 267, 1086, 1295
FauI	CCCGC	1 cut(s)	1216
Fnu4HI	GCNGC	5 cut(s)	103, 286, 333, 598, 862
FokI	GGATG	2 cut(s)	195, 639
Fsp4HI	GCNGC	5 cut(s)	103, 286, 333, 598, 862
GlaI	GCGC	3 cut(s)	540, 574, 1188
GluI	GCNGC	5 cut(s)	103, 286, 333, 598, 862
HaeII	RGCGCY	1 cut(s)	1190
HaeIII	GGCC	1 cut(s)	1270
HgaI	GACGC	3 cut(s)	100, 338, 589
HhaI	GCGC	3 cut(s)	541, 575, 1189
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	5 cut(s)	196, 241, 271, 1090, 1299
Hin6I	GCGC	3 cut(s)	539, 573, 1187
HinP1I	GCGC	3 cut(s)	539, 573, 1187
HinfI	GANTC	4 cut(s)	418, 487, 649, 772
HphI	GGTGA	1 cut(s)	1316
Hpy166II	GTNNAC	1 cut(s)	1023
Hpy188I	TCNGA	8 cut(s)	29, 408, 457, 464, 654, 669, 680, 1327
Hpy8I	GTNNAC	1 cut(s)	1023
Hpy99I	CGWCG	7 cut(s)	116, 572, 605, 765, 842, 1039, 1045
HpyAV	CCTTC	6 cut(s)	39, 76, 1069, 1099, 1121, 1133
HpyCH4III	ACNGT	4 cut(s)	1032, 1069, 1155, 1304
HpyCH4IV	ACGT	1 cut(s)	1025
HpyCH4V	TGCA	3 cut(s)	300, 1012, 1215
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 511, 536, 922
HpyF3I	CTNAG	2 cut(s)	361, 414
HpySE526I	ACGT	1 cut(s)	1025
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	5 cut(s)	196, 241, 271, 1090, 1299
HspAI	GCGC	3 cut(s)	539, 573, 1187
Kpn2I	TCCGGA	3 cut(s)	712, 801, 968
KroI	GCCGGC	1 cut(s)	1270
KroNI	GCCGGC	1 cut(s)	1272
Kzo9I	GATC	8 cut(s)	93, 136, 255, 357, 403, 751, 757, 765
LmnI	GCTCC	1 cut(s)	804
Lsp1109I	GCAGC	2 cut(s)	319, 873
MaeII	ACGT	1 cut(s)	1025
MaeIII	GTNAC	4 cut(s)	318, 474, 1026, 1069
MalI	GATC	8 cut(s)	95, 138, 257, 359, 405, 753, 759, 767
MbiI	CCGCTC	1 cut(s)	683
MboI	GATC	8 cut(s)	93, 136, 255, 357, 403, 751, 757, 765
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	3 cut(s)	255, 751, 765
MluCI	AATT	5 cut(s)	224, 353, 692, 929, 947
MnlI	CCTC	9 cut(s)	380, 538, 714, 717, 752, 967, 996, 1039, 1321
MroI	TCCGGA	3 cut(s)	712, 801, 968
MroNI	GCCGGC	1 cut(s)	1270
MroXI	GAANNNNTTC	4 cut(s)	486, 674, 809, 932
MseI	TTAA	4 cut(s)	279, 551, 1113, 1277
MslI	CAYNNNNRTG	1 cut(s)	1091
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	3 cut(s)	180, 402, 575
MwoI	GCNNNNNNNGC	4 cut(s)	108, 511, 536, 922
NaeI	GCCGGC	1 cut(s)	1272
NdeII	GATC	8 cut(s)	93, 136, 255, 357, 403, 751, 757, 765
NgoMIV	GCCGGC	1 cut(s)	1270
NlaIII	CATG	5 cut(s)	196, 241, 271, 1090, 1299
NlaIV	GGNNCC	2 cut(s)	64, 800
NmuCI	GTSAC	1 cut(s)	1026
NruI	TCGCGA	1 cut(s)	402
NspV	TTCGAA	2 cut(s)	734, 945
PagI	TCATGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 776, 1022, 1031
PdiI	GCCGGC	1 cut(s)	1272
PdmI	GAANNNNTTC	4 cut(s)	486, 674, 809, 932
PfeI	GAWTC	4 cut(s)	418, 487, 649, 772
PflFI	GACNNNGTC	1 cut(s)	1286
PkrI	GCNGC	5 cut(s)	104, 287, 334, 599, 863
PshAI	GACNNNNGTC	1 cut(s)	1156
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	64, 800
PsuI	RGATCY	3 cut(s)	255, 751, 765
PsyI	GACNNNGTC	1 cut(s)	1286
RruI	TCGCGA	1 cut(s)	402
RsaI	GTAC	3 cut(s)	35, 1241, 1266
RsaNI	GTAC	3 cut(s)	34, 1240, 1265
RseI	CAYNNNNRTG	1 cut(s)	1091
SaqAI	TTAA	4 cut(s)	279, 551, 1113, 1277
SatI	GCNGC	5 cut(s)	103, 286, 333, 598, 862
Sau3AI	GATC	8 cut(s)	93, 136, 255, 357, 403, 751, 757, 765
ScrFI	CCNGG	1 cut(s)	156
SfuI	TTCGAA	2 cut(s)	734, 945
SmiMI	CAYNNNNRTG	1 cut(s)	1091
Sse9I	AATT	5 cut(s)	224, 353, 692, 929, 947
SsiI	CCGC	8 cut(s)	102, 285, 597, 683, 698, 818, 1169, 1223
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	794
TaaI	ACNGT	4 cut(s)	1032, 1069, 1155, 1304
TaiI	ACGT	1 cut(s)	1028
TaqI	TCGA	9 cut(s)	734, 760, 770, 837, 945, 959, 983, 993, 1160
TasI	AATT	5 cut(s)	224, 353, 692, 929, 947
TauI	GCSGC	3 cut(s)	105, 288, 600
TfiI	GAWTC	4 cut(s)	418, 487, 649, 772
Tru1I	TTAA	4 cut(s)	279, 551, 1113, 1277
Tru9I	TTAA	4 cut(s)	279, 551, 1113, 1277
TscAI	CASTG	1 cut(s)	521
TseFI	GTSAC	1 cut(s)	1026
TseI	GCWGC	2 cut(s)	332, 861
Tsp45I	GTSAC	1 cut(s)	1026
TspDTI	ATGAA	7 cut(s)	161, 209, 497, 671, 940, 1097, 1103
TspGWI	ACGGA	5 cut(s)	513, 778, 906, 1058, 1151
TspRI	CASTG	1 cut(s)	521
Tth111I	GACNNNGTC	1 cut(s)	1286
XapI	RAATTY	3 cut(s)	692, 929, 947
XmnI	GAANNNNTTC	4 cut(s)	486, 674, 809, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.