Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006737

Physical Location & Seq

Genomic Coordinates Forward (+)

43978391 .. 43985195

Gene Structure 6805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0289500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGAAGTCCGATCTTATGATGACGGGACCTTCGCCACCGTCCGATCAGTTCATGTCGCCGGCCGAAAGCCACCACTGCAGAAATGTGGTCGGCTTGATAGTAAGGAGAGAAATTTCTCCTCGAGCAAAACACTTGCCTAGAAGACGGTGGGGAGAAATTCCTAAAGTGAAAGCTGATTCCTCTTCCACTGGCCCTGAGTGCCAAGCAACAATAGATGCTAAGCGTGGCCTTCTTTCATGGGTTGAAGCAGAGTCAATACGGCATTTGTCAGCCAGGTACTGTAATTTAGTACCTCCTCCAAGGTCAACCATTGCAGCAGCATTTAGTCCCGATGGAAGAACGGTTGCTTCTACACATGGTGACCACACTGTGAAGATAATTGATTGCCAAACTGGAAGGTGCTTAAAGGTTTTGAGTGGCCATAGGAGGACACCCTGGGTGGTGAGGTTCCACCCTTCGCAACCAGAAATAATTGCTAGTGGCGGTTTGGATCACGAAGTTCGCTTATGGGATCTAAACACTTCTGAGTGTATAGGATCACGTGATTTCCATCGACCTATTGCATCCATGGCTTTTCATGCGACAGGGGAACTCCTAGTTGTTGCATCAGGACACAAGGTGTATATATGGAACTACAAAAACCAGCATTCGTCTCCAGACATTGTATTGAAAACATGGCGTTCACTTAGAGCAGTGCATTTTCACCCCCAAGCTGCTCCATTTCTTCTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTTGATGACACCAGCAACATCTTCCGGCTACTTACAATATCCTTCTCCTGCTGTTTTCTTGGCAAAAGTTCATTCTAGTGAACGCCTTAGTTTGGCTGCTGAACTGCCACATATGTCCTTGCCTTTCTTCTTTGTGTCACCATCTGTAGATAATCCAAGAAAAGAAATGCAGGGGGATGGGCATGTTGGTCCAAGTAACATGCAAGTCACTTCTGCTTTACGTCAGTCTGAAGCAGTTGCAAATGCAACAGAGCAGAGTGATAGCACAGCTTCTCCCATGGAGGCATTTCCATCAGTTATATCTCTTACTCATCTCAACGATGCCATGGAGACTGATGAGATGCAGGCTATAGGGAGAAGCCAGCCTGAAAACTTTACTAATGTAGATTCTGCTATTAATAGACTACCTGAAAATATTCCGAATCCTCTTCATTCTGCTGAACCTGGGCAACTTCGTCATATTTCTCCTTATAGAGATTCAGCATTTTGGGAGCTTCCTTTTCTCCAAGGGTGGTTAACGGGTCAAAGCCAAGCCACTTTTCCCTCGATGCTTCCTCTTAATGGTGCTGGGCTTGACACTTCAGCCCAACATAATGGTTCTTCTAATTTAGCGCCACATGTGGCAACTTCTTTAGCAATGCGAGGAAGCACCAGCGTATCCGGGGTTTCTGAAAGCGCTGGTTTGCATTTTCGCTTCTCAGTACCAGAATCTGGGGATAGTGCTGCTCTCTTAAATGCCCTGCATGATGGGAATGAAGCTCAGCCCATTATTAGCAGAATCCAGTCTGAAATTACTACATCACTGGCTGCTACAGCAGCTGCAGAGTTACCATGCACTGTGAAGCTAAGAATATGGTCACACGACATAAAAAATCCTTCTGCTCCACTCAATACTGAACGATGCCGCTTAACCATTCCCCATGCTGTTCTTTGCAGTGAAATGGGCACTCATTTCTCTCCTTGTGGGAGATTCTTAGCCGCCTGTGTTGCATGCATGGTTCCTGATATGGAAGCTGAACCTGGACTACAAAGTGTAGTCCATCAAGATTCTGGAATTGCAACATCCCCAACCCGGCATCCAATCTCAGCACATCAAGTCATTTATGAGCTTCGCATATATTCACTCGAGGAAGCAACATTTGGTTCAATACTCGCGTCCCGGGCTATCAGAGCTGCACATTGTTTGACTTCAATCCAGTTCTCACCCACGTCTGAGCATATATTAATTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGCGAAACAACCGTACCTATTTACACTGTTCTTGAGGTCTACAGAGTTTCAGATATGGAACTTGTGAGAGTACTTCCTAGTGCAGATGATGAGGTTAATGTTGCTTGCTTTCATCCGTTTGCTGGGGGCGGTCTGGCTTATGGAACTAAGGAAGGGAAGCTTAGAGTCCTCCAGTTTGATAGTGCTCACAGTGGAAACTGCTTTACAGAGAAAAATATGGCTGCCCTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030001 GO:0035556 GO:0036211 GO:0042538 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

757

Amino Acids

82.29

Weight (kDa)

6.31

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	105 - 219	2.8e-14	WDR3 first beta-propeller domain
WDR55	PF24796	105 - 214	1.7e-09	WDR55
Beta-prop_THOC3	PF25174	106 - 238	1.5e-20	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	107 - 248	8.2e-22	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	107 - 221	6.2e-14	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	107 - 212	5e-11	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	107 - 207	1.3e-06	WDR3 second beta-propeller domain
EIF3I	PF24805	107 - 203	8.8e-06	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	109 - 223	7.3e-10	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	111 - 236	2.6e-12	Prp19 WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	112 - 215	1.3e-06	WDR90/POC16, second beta-propeller
Beta-prop_EML_2	PF23414	146 - 236	1.1e-07	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10930 AT5G25110
fragaria_vesca	FvH4_2g41050
malus_domestica	MD15G1039300.v1.1 MD17G1222800.v1.1
prunus_persica	Prupe.1G392900_v2.0.a1 Prupe.3G097900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133031 RchiOBHm_Chr6g0299521
rosa_laevigata	RLG00000011420 RLG00000019304
rosa_multiflora	Rmu_co8431815.1_g000001 Rmu_sc0006821.1_g000008 Rmu_sc0008770.1_g000015
rosa_roxburghii	Rroxscaffold_2G00111560 Rroxscaffold_7G00168590
rosa_rugosa	Rorug02G0309200 Rorug06G0289500
rosa_samantha	Rh2BG367400 Rh2CG344800 Rh2DG384400 Rh6AG400800 Rh6BG409400 Rh6DG401800
rosa_wichuraiana	Rw2G029410 Rw6G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1475
AccI	GTMKAC	2 cut(s)	2002, 2079
AccII	CGCG	1 cut(s)	1919
AciI	CCGC	4 cut(s)	483, 1669, 1743, 2169
AclWI	GGATC	3 cut(s)	498, 519, 544
AcoI	YGGCCR	2 cut(s)	60, 418
AcsI	RAATTY	2 cut(s)	111, 156
AcuI	CTGAAG	3 cut(s)	741, 1014, 1329
AcvI	CACGTG	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	2005
AdeI	CACNNNGTG	3 cut(s)	359, 370, 619
AfaI	GTAC	5 cut(s)	278, 291, 1467, 2055, 2112
AfeI	AGCGCT	1 cut(s)	1441
AfiI	CCNNNNNNNGG	5 cut(s)	856, 1325, 1475, 1836, 2162
AflIII	ACRYGT	1 cut(s)	1381
AgsI	TTSAA	4 cut(s)	245, 670, 1911, 1956
AjiI	CACGTC	1 cut(s)	1974
AjnI	CCWGG	5 cut(s)	272, 434, 1207, 1783, 2265
AjuI	GAANNNNNNNTTGG	4 cut(s)	1287, 1319, 1887, 1919
Alw21I	GWGCWC	1 cut(s)	2227
Alw26I	GTCTC	2 cut(s)	657, 1088
AlwI	GGATC	3 cut(s)	498, 519, 544
AlwNI	CAGNNNCTG	3 cut(s)	279, 1475, 1583
Ama87I	CYCGRG	3 cut(s)	120, 1889, 1923
Aor51HI	AGCGCT	1 cut(s)	1441
AoxI	GGCC	4 cut(s)	60, 190, 226, 418
ApoI	RAATTY	2 cut(s)	111, 156
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
AseI	ATTAAT	2 cut(s)	1161, 1988
Asp700I	GAANNNNTTC	1 cut(s)	1179
AspLEI	GCGC	2 cut(s)	1378, 1442
AspS9I	GGNCC	3 cut(s)	26, 191, 953
AsuC2I	CCSGG	4 cut(s)	1426, 1837, 1924, 1925
AsuHPI	GGTGA	5 cut(s)	371, 454, 695, 894, 1959
AvaI	CYCGRG	3 cut(s)	120, 1889, 1923
AvaII	GGWCC	2 cut(s)	26, 953
BaeGI	GKGCMC	1 cut(s)	1712
BaeI	ACNNNNGTAYC	4 cut(s)	1404, 1437, 2037, 2070
BalI	TGGCCA	1 cut(s)	420
BbrPI	CACGTG	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	2227
BbvCI	CCTCAGC	1 cut(s)	735
BccI	CCATC	8 cut(s)	326, 558, 913, 935, 1063, 1505, 1812, 2033
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	5 cut(s)	274, 436, 1209, 1785, 2267
BciVI	GTATCC	1 cut(s)	1432
BcnI	CCSGG	4 cut(s)	1426, 1837, 1924, 1925
BcoDI	GTCTC	2 cut(s)	657, 1088
BfaI	CTAG	5 cut(s)	138, 477, 596, 840, 2118
BfmI	CTRYAG	6 cut(s)	76, 909, 1113, 1575, 1584, 2080
BfoI	RGCGCY	2 cut(s)	1379, 1443
BfuI	GTATCC	1 cut(s)	1432
BlpI	GCTNAGC	2 cut(s)	219, 1524
BmcAI	AGTACT	1 cut(s)	2112
Bme1390I	CCNGG	9 cut(s)	274, 436, 1209, 1426, 1785, 1837, 1924, 1925, 2267
Bme18I	GGWCC	2 cut(s)	26, 953
BmeT110I	CYCGRG	3 cut(s)	120, 1889, 1923
BmgBI	CACGTC	1 cut(s)	1974
BmgT120I	GGNCC	3 cut(s)	26, 191, 953
BmiI	GGNNCC	3 cut(s)	27, 449, 1764
BmrFI	CCNGG	9 cut(s)	274, 436, 1209, 1426, 1785, 1837, 1924, 1925, 2267
BmsI	GCATC	8 cut(s)	205, 572, 614, 1075, 1095, 1302, 1655, 1849
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	2 cut(s)	639, 2195
Bpu10I	CCTNAGC	1 cut(s)	735
Bpu1102I	GCTNAGC	2 cut(s)	219, 1524
BpuEI	CTTGAG	1 cut(s)	2093
BpuMI	CCSGG	4 cut(s)	1426, 1837, 1924, 1925
BsaAI	YACGTR	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	2005
BsaXI	ACNNNNNCTCC	2 cut(s)	1021, 1051
Bsc4I	CCNNNNNNNGG	5 cut(s)	856, 1325, 1475, 1836, 2162
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	6 cut(s)	193, 397, 1546, 1572, 1960, 2212
Bse3DI	GCAATG	2 cut(s)	309, 1407
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	5 cut(s)	274, 436, 1209, 1785, 2267
BseGI	GGATG	5 cut(s)	563, 946, 1826, 1840, 2152
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	5 cut(s)	856, 1325, 1475, 1836, 2162
BseMI	GCAATG	2 cut(s)	309, 1407
BseMII	CTCAG	7 cut(s)	186, 516, 726, 1476, 1538, 1863, 1968
BseNI	ACTGG	6 cut(s)	193, 397, 1546, 1572, 1960, 2212
BseRI	GAGGAG	2 cut(s)	108, 285
BseSI	GKGCMC	1 cut(s)	1712
BseX3I	CGGCCG	1 cut(s)	60
BseYI	CCCAGC	2 cut(s)	1331, 2162
BsgI	GTGCAG	2 cut(s)	1923, 2142
Bsh1236I	CGCG	1 cut(s)	1919
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	62, 192, 228, 420
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	2227
BsiHKCI	CYCGRG	3 cut(s)	120, 1889, 1923
BsiSI	CCGG	5 cut(s)	59, 789, 1425, 1837, 1924
BslFI	GGGAC	3 cut(s)	39, 312, 1906
BslI	CCNNNNNNNGG	5 cut(s)	856, 1325, 1475, 1836, 2162
BsmAI	GTCTC	2 cut(s)	657, 1088
BsmBI	CGTCTC	1 cut(s)	657
BsmFI	GGGAC	3 cut(s)	39, 312, 1906
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	4 cut(s)	62, 192, 228, 420
BsoBI	CYCGRG	3 cut(s)	120, 1889, 1923
Bsp1286I	GDGCHC	2 cut(s)	1712, 2227
Bsp143I	GATC	6 cut(s)	10, 43, 490, 511, 536, 745
Bsp1720I	GCTNAGC	2 cut(s)	219, 1524
Bsp19I	CCATGG	4 cut(s)	567, 1041, 1089, 2008
BspACI	CCGC	4 cut(s)	483, 1669, 1743, 2169
BspANI	GGCC	4 cut(s)	62, 192, 228, 420
BspCNI	CTCAG	7 cut(s)	187, 517, 727, 1475, 1537, 1862, 1969
BspFNI	CGCG	1 cut(s)	1919
BspLI	GGNNCC	3 cut(s)	27, 449, 1764
BspMAI	CTGCAG	2 cut(s)	80, 1588
BspPI	GGATC	3 cut(s)	498, 519, 544
BsrDI	GCAATG	2 cut(s)	309, 1407
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	6 cut(s)	193, 397, 1546, 1572, 1960, 2212
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	6 cut(s)	10, 43, 490, 511, 536, 745
BssNI	GRCGYC	1 cut(s)	2005
BssT1I	CCWWGG	6 cut(s)	299, 567, 1041, 1089, 1270, 2008
Bst2UI	CCWGG	5 cut(s)	274, 436, 1209, 1785, 2267
Bst4CI	ACNGT	9 cut(s)	39, 147, 281, 343, 370, 1603, 2053, 2068, 2231
Bst6I	CTCTTC	4 cut(s)	187, 760, 1197, 2022
BstACI	GRCGYC	1 cut(s)	2005
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	5 cut(s)	60, 1110, 1127, 1756, 2146
BstDSI	CCRYGG	4 cut(s)	567, 1041, 1089, 2008
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	5 cut(s)	563, 946, 1826, 1840, 2152
BstFNI	CGCG	1 cut(s)	1919
BstH2I	RGCGCY	2 cut(s)	1379, 1443
BstHHI	GCGC	2 cut(s)	1378, 1442
BstKTI	GATC	6 cut(s)	13, 46, 493, 514, 539, 748
BstMAI	GTCTC	2 cut(s)	657, 1088
BstMBI	GATC	6 cut(s)	10, 43, 490, 511, 536, 745
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	9 cut(s)	75, 198, 569, 578, 1577, 1580, 1751, 1925, 1934
BstNI	CCWGG	5 cut(s)	274, 436, 1209, 1785, 2267
BstNSI	RCATGY	4 cut(s)	950, 967, 1385, 1758
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	9 cut(s)	272, 434, 1207, 1424, 1783, 1835, 1922, 1923, 2265
BstSFI	CTRYAG	6 cut(s)	76, 909, 1113, 1575, 1584, 2080
BstSLI	GKGCMC	1 cut(s)	1712
BstUI	CGCG	1 cut(s)	1919
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	1358
BstYI	RGATCY	1 cut(s)	511
BstZI	CGGCCG	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	1432
BsuRI	GGCC	4 cut(s)	62, 192, 228, 420
BtgI	CCRYGG	4 cut(s)	567, 1041, 1089, 2008
BtrI	CACGTC	1 cut(s)	1974
BtsCI	GGATG	5 cut(s)	563, 946, 1826, 1840, 2152
BtsI	GCAGTG	3 cut(s)	73, 699, 1705
BtsIMutI	CAGTG	9 cut(s)	73, 186, 366, 699, 1565, 1599, 1705, 2064, 2236
Cac8I	GCNNGC	5 cut(s)	60, 1110, 1127, 1756, 2146
CaiI	CAGNNNCTG	3 cut(s)	279, 1475, 1583
CfoI	GCGC	2 cut(s)	1378, 1442
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	26, 191, 953
Cfr9I	CCCGGG	1 cut(s)	1923
CseI	GACGC	2 cut(s)	1908, 2013
Csp6I	GTAC	5 cut(s)	277, 290, 1466, 2054, 2111
CviQI	GTAC	5 cut(s)	277, 290, 1466, 2054, 2111
DpnI	GATC	6 cut(s)	12, 45, 492, 513, 538, 747
DpnII	GATC	6 cut(s)	10, 43, 490, 511, 536, 745
DraIII	CACNNNGTG	3 cut(s)	359, 370, 619
EaeI	YGGCCR	2 cut(s)	60, 418
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	4 cut(s)	187, 760, 1197, 2022
EarI	CTCTTC	4 cut(s)	187, 760, 1197, 2022
EclXI	CGGCCG	1 cut(s)	60
Eco130I	CCWWGG	6 cut(s)	299, 567, 1041, 1089, 1270, 2008
Eco47I	GGWCC	2 cut(s)	26, 953
Eco47III	AGCGCT	1 cut(s)	1441
Eco52I	CGGCCG	1 cut(s)	60
Eco57I	CTGAAG	3 cut(s)	741, 1014, 1329
Eco72I	CACGTG	1 cut(s)	542
Eco88I	CYCGRG	3 cut(s)	120, 1889, 1923
Eco91I	GGTNACC	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	359
EcoRII	CCWGG	5 cut(s)	272, 434, 1207, 1783, 2265
EcoT14I	CCWWGG	6 cut(s)	299, 567, 1041, 1089, 1270, 2008
EcoT22I	ATGCAT	1 cut(s)	1760
ErhI	CCWWGG	6 cut(s)	299, 567, 1041, 1089, 1270, 2008
Esp3I	CGTCTC	1 cut(s)	657
FalI	AAGNNNNNCTT	2 cut(s)	2184, 2216
FaqI	GGGAC	3 cut(s)	39, 312, 1906
FauNDI	CATATG	1 cut(s)	876
FblI	GTMKAC	2 cut(s)	2002, 2079
FokI	GGATG	5 cut(s)	550, 953, 1813, 1827, 2139
FspBI	CTAG	5 cut(s)	138, 477, 596, 840, 2118
GlaI	GCGC	2 cut(s)	1377, 1441
GsaI	CCCAGC	2 cut(s)	1335, 2166
GsuI	CTGGAG	2 cut(s)	639, 2195
HaeII	RGCGCY	2 cut(s)	1379, 1443
HaeIII	GGCC	4 cut(s)	62, 192, 228, 420
HapII	CCGG	5 cut(s)	59, 789, 1425, 1837, 1924
HgaI	GACGC	2 cut(s)	1908, 2013
HhaI	GCGC	2 cut(s)	1378, 1442
Hin1I	GRCGYC	1 cut(s)	2005
Hin6I	GCGC	2 cut(s)	1376, 1440
HinP1I	GCGC	2 cut(s)	1376, 1440
HincII	GTYRAC	3 cut(s)	306, 1281, 2003
HindII	GTYRAC	3 cut(s)	306, 1281, 2003
HindIII	AAGCTT	1 cut(s)	2198
HpaI	GTTAAC	1 cut(s)	1281
HpaII	CCGG	5 cut(s)	59, 789, 1425, 1837, 1924
HphI	GGTGA	5 cut(s)	371, 454, 695, 894, 1959
Hpy166II	GTNNAC	6 cut(s)	306, 683, 845, 1281, 2003, 2080
Hpy188III	TCNNGA	9 cut(s)	329, 494, 609, 656, 749, 1766, 1808, 1815, 2072
Hpy8I	GTNNAC	6 cut(s)	306, 683, 845, 1281, 2003, 2080
Hpy99I	CGWCG	1 cut(s)	2007
HpyAV	CCTTC	7 cut(s)	39, 239, 390, 465, 816, 1650, 2186
HpyCH4III	ACNGT	9 cut(s)	39, 147, 281, 343, 370, 1603, 2053, 2068, 2231
HpyCH4IV	ACGT	3 cut(s)	541, 985, 1973
HpyF10VI	GCNNNNNNNGC	9 cut(s)	75, 198, 569, 578, 1577, 1580, 1751, 1925, 1934
HpySE526I	ACGT	3 cut(s)	541, 985, 1973
Hsp92I	GRCGYC	1 cut(s)	2005
HspAI	GCGC	2 cut(s)	1376, 1440
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
KspAI	GTTAAC	1 cut(s)	1281
Kzo9I	GATC	6 cut(s)	10, 43, 490, 511, 536, 745
LmnI	GCTCC	3 cut(s)	721, 1255, 1651
LweI	GCATC	8 cut(s)	205, 572, 614, 1075, 1095, 1302, 1655, 1849
MaeI	CTAG	5 cut(s)	138, 477, 596, 840, 2118
MaeII	ACGT	3 cut(s)	541, 985, 1973
MaeIII	GTNAC	6 cut(s)	359, 900, 959, 970, 1590, 1620
MalI	GATC	6 cut(s)	12, 45, 492, 513, 538, 747
MboI	GATC	6 cut(s)	10, 43, 490, 511, 536, 745
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	1712, 2227
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	9 cut(s)	111, 156, 283, 378, 471, 1369, 1554, 1818, 1989
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	3 cut(s)	260, 746, 2214
Mox20I	TGGCCA	1 cut(s)	420
Mph1103I	ATGCAT	1 cut(s)	1760
MroNI	GCCGGC	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	1179
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	9 cut(s)	404, 1161, 1280, 1323, 1496, 1673, 1988, 2022, 2136
MslI	CAYNNNNRTG	1 cut(s)	840
Msp20I	TGGCCA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	1583
MspI	CCGG	5 cut(s)	59, 789, 1425, 1837, 1924
MspR9I	CCNGG	9 cut(s)	274, 436, 1209, 1426, 1785, 1837, 1924, 1925, 2267
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	5 cut(s)	274, 436, 1209, 1785, 2267
MvnI	CGCG	1 cut(s)	1919
MwoI	GCNNNNNNNGC	9 cut(s)	75, 198, 569, 578, 1577, 1580, 1751, 1925, 1934
NaeI	GCCGGC	1 cut(s)	60
NciI	CCSGG	4 cut(s)	1426, 1837, 1924, 1925
NcoI	CCATGG	4 cut(s)	567, 1041, 1089, 2008
NdeI	CATATG	1 cut(s)	876
NdeII	GATC	6 cut(s)	10, 43, 490, 511, 536, 745
NgoMIV	GCCGGC	1 cut(s)	58
NlaIV	GGNNCC	3 cut(s)	27, 449, 1764
NmuCI	GTSAC	4 cut(s)	359, 900, 970, 1620
NsiI	ATGCAT	1 cut(s)	1760
NspI	RCATGY	4 cut(s)	950, 967, 1385, 1758
PaeI	GCATGC	1 cut(s)	1758
PaeR7I	CTCGAG	2 cut(s)	120, 1889
PasI	CCCWGGG	1 cut(s)	435
PciI	ACATGT	1 cut(s)	1381
PctI	GAATGC	1 cut(s)	646
PdiI	GCCGGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	1179
PfeI	GAWTC	9 cut(s)	176, 761, 1151, 1186, 1241, 1472, 1542, 1734, 1811
PflMI	CCANNNNNTGG	1 cut(s)	1475
PleI	GAGTC	3 cut(s)	259, 746, 2213
PmaCI	CACGTG	1 cut(s)	542
PmlI	CACGTG	1 cut(s)	542
PpsI	GAGTC	3 cut(s)	259, 746, 2213
Ppu21I	YACGTR	1 cut(s)	542
PpuMI	RGGWCCY	1 cut(s)	26
PscI	ACATGT	1 cut(s)	1381
PshBI	ATTAAT	2 cut(s)	1161, 1988
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	5 cut(s)	272, 434, 1207, 1783, 2265
PspCI	CACGTG	1 cut(s)	542
PspEI	GGTNACC	1 cut(s)	359
PspFI	CCCAGC	2 cut(s)	1331, 2162
PspGI	CCWGG	5 cut(s)	272, 434, 1207, 1783, 2265
PspN4I	GGNNCC	3 cut(s)	27, 449, 1764
PspPI	GGNCC	3 cut(s)	26, 191, 953
PspPPI	RGGWCCY	1 cut(s)	26
PspXI	VCTCGAGB	2 cut(s)	120, 1889
PsrI	GAACNNNNNNTAC	2 cut(s)	1773, 1805
PstI	CTGCAG	2 cut(s)	80, 1588
PstNI	CAGNNNCTG	3 cut(s)	279, 1475, 1583
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	1583
RsaI	GTAC	5 cut(s)	278, 291, 1467, 2055, 2112
RsaNI	GTAC	5 cut(s)	277, 290, 1466, 2054, 2111
RseI	CAYNNNNRTG	1 cut(s)	840
SalI	GTCGAC	1 cut(s)	2001
SaqAI	TTAA	9 cut(s)	404, 1161, 1280, 1323, 1496, 1673, 1988, 2022, 2136
Sau3AI	GATC	6 cut(s)	10, 43, 490, 511, 536, 745
Sau96I	GGNCC	3 cut(s)	26, 191, 953
ScaI	AGTACT	1 cut(s)	2112
SchI	GAGTC	3 cut(s)	260, 746, 2214
ScrFI	CCNGG	9 cut(s)	274, 436, 1209, 1426, 1785, 1837, 1924, 1925, 2267
SduI	GDGCHC	2 cut(s)	1712, 2227
SfaNI	GCATC	8 cut(s)	205, 572, 614, 1075, 1095, 1302, 1655, 1849
SfcI	CTRYAG	6 cut(s)	76, 909, 1113, 1575, 1584, 2080
Sfr274I	CTCGAG	2 cut(s)	120, 1889
SinI	GGWCC	2 cut(s)	26, 953
SlaI	CTCGAG	2 cut(s)	120, 1889
SmaI	CCCGGG	1 cut(s)	1925
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	3 cut(s)	120, 1889, 2072
SmoI	CTYRAG	3 cut(s)	120, 1889, 2072
SphI	GCATGC	1 cut(s)	1758
Sse9I	AATT	9 cut(s)	111, 156, 283, 378, 471, 1369, 1554, 1818, 1989
SsiI	CCGC	4 cut(s)	483, 1669, 1743, 2169
SspI	AATATT	1 cut(s)	1180
SspMI	CTAG	5 cut(s)	138, 477, 596, 840, 2118
StyD4I	CCNGG	9 cut(s)	272, 434, 1207, 1424, 1783, 1835, 1922, 1923, 2265
StyI	CCWWGG	6 cut(s)	299, 567, 1041, 1089, 1270, 2008
TaaI	ACNGT	9 cut(s)	39, 147, 281, 343, 370, 1603, 2053, 2068, 2231
TaiI	ACGT	3 cut(s)	544, 988, 1976
TaqI	TCGA	5 cut(s)	121, 553, 1310, 1890, 2002
TasI	AATT	9 cut(s)	111, 156, 283, 378, 471, 1369, 1554, 1818, 1989
TatI	WGTACW	1 cut(s)	2110
TauI	GCSGC	2 cut(s)	1671, 1745
TfiI	GAWTC	9 cut(s)	176, 761, 1151, 1186, 1241, 1472, 1542, 1734, 1811
Tru1I	TTAA	9 cut(s)	404, 1161, 1280, 1323, 1496, 1673, 1988, 2022, 2136
Tru9I	TTAA	9 cut(s)	404, 1161, 1280, 1323, 1496, 1673, 1988, 2022, 2136
TscAI	CASTG	9 cut(s)	80, 193, 373, 699, 1572, 1606, 1705, 2071, 2236
TseFI	GTSAC	4 cut(s)	359, 900, 970, 1620
Tsp45I	GTSAC	4 cut(s)	359, 900, 970, 1620
TspDTI	ATGAA	8 cut(s)	17, 40, 225, 566, 824, 1184, 1533, 2141
TspGWI	ACGGA	1 cut(s)	2145
TspMI	CCCGGG	1 cut(s)	1923
TspRI	CASTG	9 cut(s)	80, 193, 373, 699, 1572, 1606, 1705, 2071, 2236
Van91I	CCANNNNNTGG	1 cut(s)	1475
VpaK11BI	GGWCC	2 cut(s)	26, 953
VspI	ATTAAT	2 cut(s)	1161, 1988
XapI	RAATTY	2 cut(s)	111, 156
XceI	RCATGY	4 cut(s)	950, 967, 1385, 1758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1811
XhoI	CTCGAG	2 cut(s)	120, 1889
XmaI	CCCGGG	1 cut(s)	1923
XmiI	GTMKAC	2 cut(s)	2002, 2079
XmnI	GAANNNNTTC	1 cut(s)	1179
XspI	CTAG	5 cut(s)	138, 477, 596, 840, 2118
ZrmI	AGTACT	1 cut(s)	2112
Zsp2I	ATGCAT	1 cut(s)	1760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.