Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006737

Physical Location & Seq

Genomic Coordinates Reverse (-)

8657604 .. 8659352

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGGATCCAAACTTAAACTTTACCCTCTCTTAAATCACTCATCCGTTTTTCACCCAGACAGTCGTTACCAATCGGCCCCTACAATGGAGGAAGAGCAACAACAACTTCGTGTTCTCTTCGCGAAATACGAGATGGGAAGGTTACTAGGCAAAGGAACATTCGGAAAAGTTTATTACGGCAAAGAGATAACAACCGGAGAAAGCGTTGCAATCAAAATCATCAACAAAGATCAAGTCAAACGTGAAGGTATGATGGAACAAATCAAACGAGAGATCTCAATCATGAGACTTGTTCGTCATCCAAACATCGTTGAGTTAAAAGAAGTCATGGCTACAAAAACAAAGATCTTCTTTATCATGGAATACGTTAAAGGCGGTGAACTTTTCTCCAAGATCGTTAAAGGAAAGCTTAAAGAAGACTCTGCTCGTAAGTATTTCCAACAATTAATCTCAGCCGTTGATTTTTGTCATAGTAGAGGCGTTTCTCACCGAGATCTAAAACCGGAGAATCTCTTAGTTGACGAGAACGGAGATCTTAAGGTTTCAGATTTTGGTCTCTCTGCTTTACCGGAACAGATTTTACAAGACGGTTTGCTTCATACTCAGTGTGGAACTCCGGCGTATGTTGCACCGGAGGTTTTGAGGAAGAAAGGTTACGACGGAGCTAAAGGTGATATTTGGTCGTGTGGTATTATCTTGTACGTGCTTCTCGCTGGATTCTTACCGTTTCAAGATGAGAACCTAATGAAAATGTATCGGAAGATCTTCAAATCGGAGTTTGAGTATCCGCCGTGGTTTTCACCGGAGTCCAAGAGGTTGATTTCAAAGCTTTTAGTTGTTGATCCTAACAAACGGATCTCGATACCGGCGATTATGCGAACACCGTGGTTTCGTAAAAACATCAACTCTCCGATCGAGTTCAAGATCGATGAGCTCGAGATCCAAAACGTAGAAGACGAAACACCAACAACAACAGCAACAACAGCAACAACAACAACAACACCGGTCTCGCCGAAGTTCTTTAACGCGTTTGAATTCATCTCTTCTATGTCATCAGGATTTGATCTATCAAGTTTGTTCGAGAGTAAGAGGAAGCTGAGATCTATGTTTACGTCACGGTGGTCGGCGTCGGAGATAATGGGGAAGCTTGAAGGGATAGGGAAAGAGATGAATATGAAGGTGAAGAGGACTAAAGACTTTAAGGTGAAGTTGTTTGGGAAAACGGAAGGGAGGAAAGGACAGATCGCGGTGACTGCTGAGGTTTTCGAGGTTGCGCCGGAAGTCGCCGTCGTTGAGTTGTGTAAGTCGGCGGGAGATACTTTGGAGTATAATAGGTTGTATGAAGAACATGTCCGGCCAGCGTTGGAGGAGATAGTGTGGTCGTGGCACGGTGATAATCATAATAATAATATTGTTAAGAGTAATGGTAATTATGTTAGTGATGAAAATTCTGGTAGTGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030001 GO:0035556 GO:0036211 GO:0042538 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

488

Amino Acids

55.56

Weight (kDa)

8.64

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	43 - 297	6.7e-78	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	44 - 292	2.4e-38	Protein tyrosine and serine/threonine kinase
NAF	PF03822	338 - 396	4.8e-20	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10930 AT5G25110
fragaria_vesca	FvH4_2g41050
malus_domestica	MD15G1039300.v1.1 MD17G1222800.v1.1
prunus_persica	Prupe.1G392900_v2.0.a1 Prupe.3G097900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133031 RchiOBHm_Chr6g0299521
rosa_laevigata	RLG00000011420 RLG00000019304
rosa_multiflora	Rmu_co8431815.1_g000001 Rmu_sc0006821.1_g000008 Rmu_sc0008770.1_g000015
rosa_roxburghii	Rroxscaffold_2G00111560 Rroxscaffold_7G00168590
rosa_rugosa	Rorug02G0309200 Rorug06G0289500
rosa_samantha	Rh2BG367400 Rh2CG344800 Rh2DG384400 Rh6AG400800 Rh6BG409400 Rh6DG401800
rosa_wichuraiana	Rw2G029410 Rw6G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	294
AccII	CGCG	3 cut(s)	122, 1028, 1247
AciI	CCGC	4 cut(s)	375, 788, 1247, 1310
AclWI	GGATC	4 cut(s)	13, 836, 863, 934
AcoI	YGGCCR	1 cut(s)	1355
AcsI	RAATTY	2 cut(s)	1034, 1447
AcyI	GRCGYC	1 cut(s)	1127
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	2 cut(s)	1026, 1348
AgeI	ACCGGT	1 cut(s)	1003
AgsI	TTSAA	6 cut(s)	731, 769, 825, 922, 1034, 1151
AluBI	AGCT	6 cut(s)	409, 665, 829, 934, 1096, 1147
AluI	AGCT	6 cut(s)	409, 665, 829, 934, 1096, 1147
Alw21I	GWGCWC	1 cut(s)	936
Alw26I	GTCTC	3 cut(s)	280, 560, 1012
AlwI	GGATC	4 cut(s)	13, 836, 863, 934
Ama87I	CYCGRG	1 cut(s)	935
AoxI	GGCC	2 cut(s)	75, 1355
ApoI	RAATTY	2 cut(s)	1034, 1447
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AseI	ATTAAT	1 cut(s)	446
AsiGI	ACCGGT	1 cut(s)	1003
Asp700I	GAANNNNTTC	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	1276
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	9 cut(s)	44, 389, 479, 683, 792, 1192, 1216, 1261, 1403
AvaI	CYCGRG	1 cut(s)	935
BamHI	GGATCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	936
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbsI	GAAGAC	2 cut(s)	423, 960
Bbv12I	GWGCWC	1 cut(s)	936
BbvCI	CCTCAGC	1 cut(s)	1257
BccI	CCATC	2 cut(s)	127, 247
BceAI	ACGGC	4 cut(s)	193, 440, 775, 1271
BciVI	GTATCC	1 cut(s)	795
BcoDI	GTCTC	3 cut(s)	280, 560, 1012
BfaI	CTAG	1 cut(s)	146
BfrI	CTTAAG	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	795
BglII	AGATCT	6 cut(s)	273, 345, 493, 532, 762, 1100
BmeT110I	CYCGRG	1 cut(s)	935
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	7, 78
BpiI	GAAGAC	2 cut(s)	423, 960
Bpu10I	CCTNAGC	1 cut(s)	1257
Bsa29I	ATCGAT	1 cut(s)	927
BsaAI	YACGTR	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	1127
BsaI	GGTCTC	2 cut(s)	560, 1012
BsaJI	CCNNGG	2 cut(s)	791, 884
BsaWI	WCCGGW	6 cut(s)	194, 502, 568, 631, 802, 1003
BsaXI	ACNNNNNCTCC	6 cut(s)	189, 219, 767, 797, 1361, 1391
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	2 cut(s)	865, 1003
Bse8I	GATNNNNATC	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	927
BseDI	CCNNGG	2 cut(s)	791, 884
BseGI	GGATG	2 cut(s)	41, 298
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	4 cut(s)	465, 617, 1088, 1248
BseRI	GAGGAG	1 cut(s)	1382
Bsh1236I	CGCG	3 cut(s)	122, 1028, 1247
Bsh1285I	CGRYCG	1 cut(s)	915
BshFI	GGCC	2 cut(s)	77, 1357
BshTI	ACCGGT	1 cut(s)	1003
BshVI	ATCGAT	1 cut(s)	927
BsiEI	CGRYCG	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	936
BsiHKCI	CYCGRG	1 cut(s)	935
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	3 cut(s)	280, 560, 1012
BsnI	GGCC	2 cut(s)	77, 1357
Bso31I	GGTCTC	2 cut(s)	560, 1012
BsoBI	CYCGRG	1 cut(s)	935
Bsp1286I	GDGCHC	1 cut(s)	936
Bsp68I	TCGCGA	1 cut(s)	122
BspACI	CCGC	4 cut(s)	375, 788, 1247, 1310
BspANI	GGCC	2 cut(s)	77, 1357
BspCNI	CTCAG	4 cut(s)	464, 616, 1089, 1249
BspDI	ATCGAT	1 cut(s)	927
BspFNI	CGCG	3 cut(s)	122, 1028, 1247
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	7, 78
BspPI	GGATC	4 cut(s)	13, 836, 863, 934
BspQI	GCTCTTC	1 cut(s)	87
BspTI	CTTAAG	1 cut(s)	536
BspTNI	GGTCTC	2 cut(s)	560, 1012
BsrFI	RCCGGY	2 cut(s)	865, 1003
BssAI	RCCGGY	2 cut(s)	865, 1003
BssECI	CCNNGG	2 cut(s)	791, 884
BssNI	GRCGYC	1 cut(s)	1127
Bst4CI	ACNGT	6 cut(s)	62, 590, 726, 885, 1119, 1391
Bst6I	CTCTTC	4 cut(s)	87, 122, 1048, 1178
BstACI	GRCGYC	1 cut(s)	1127
BstAFI	CTTAAG	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	1359
BstDEI	CTNAG	5 cut(s)	451, 514, 603, 1097, 1257
BstDSI	CCRYGG	2 cut(s)	791, 884
BstF5I	GGATG	2 cut(s)	41, 298
BstFNI	CGCG	3 cut(s)	122, 1028, 1247
BstHHI	GCGC	1 cut(s)	1276
BstMAI	GTCTC	3 cut(s)	280, 560, 1012
BstMCI	CGRYCG	1 cut(s)	915
BstMWI	GCNNNNNNNGC	3 cut(s)	626, 983, 1253
BstNSI	RCATGY	1 cut(s)	1352
BstUI	CGCG	3 cut(s)	122, 1028, 1247
BstV2I	GAAGAC	2 cut(s)	423, 960
BstX2I	RGATCY	9 cut(s)	5, 273, 345, 493, 532, 762, 855, 939, 1100
BstYI	RGATCY	9 cut(s)	5, 273, 345, 493, 532, 762, 855, 939, 1100
Bsu15I	ATCGAT	1 cut(s)	927
BsuI	GTATCC	1 cut(s)	795
BsuRI	GGCC	2 cut(s)	77, 1357
BsuTUI	ATCGAT	1 cut(s)	927
BtgI	CCRYGG	2 cut(s)	791, 884
BtsCI	GGATG	2 cut(s)	41, 298
BtsIMutI	CAGTG	1 cut(s)	611
BtuMI	TCGCGA	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	1359
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	1276
Cfr10I	RCCGGY	2 cut(s)	865, 1003
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	927
CseI	GACGC	1 cut(s)	1116
Csp6I	GTAC	1 cut(s)	700
CspAI	ACCGGT	1 cut(s)	1003
CviAII	CATG	4 cut(s)	283, 328, 358, 1349
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	5 cut(s)	451, 514, 603, 1097, 1257
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	1355
Eam1104I	CTCTTC	4 cut(s)	87, 122, 1048, 1178
EarI	CTCTTC	4 cut(s)	87, 122, 1048, 1178
EciI	GGCGGA	1 cut(s)	777
Ecl136II	GAGCTC	1 cut(s)	934
Eco24I	GRGCYC	1 cut(s)	936
Eco31I	GGTCTC	2 cut(s)	560, 1012
Eco53kI	GAGCTC	1 cut(s)	934
Eco88I	CYCGRG	1 cut(s)	935
EcoICRI	GAGCTC	1 cut(s)	934
EcoRI	GAATTC	1 cut(s)	1034
EcoT38I	GRGCYC	1 cut(s)	936
FaeI	CATG	4 cut(s)	286, 331, 361, 1352
FalI	AAGNNNNNCTT	4 cut(s)	335, 367, 393, 425
FatI	CATG	4 cut(s)	282, 327, 357, 1348
FauI	CCCGC	1 cut(s)	1303
FokI	GGATG	2 cut(s)	28, 285
FriOI	GRGCYC	1 cut(s)	936
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	1275
HaeIII	GGCC	2 cut(s)	77, 1357
HgaI	GACGC	1 cut(s)	1116
HhaI	GCGC	1 cut(s)	1276
Hin1I	GRCGYC	1 cut(s)	1127
Hin1II	CATG	4 cut(s)	286, 331, 361, 1352
Hin6I	GCGC	1 cut(s)	1274
HinP1I	GCGC	1 cut(s)	1274
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	3 cut(s)	407, 827, 1145
HinfI	GANTC	4 cut(s)	419, 508, 717, 806
HphI	GGTGA	9 cut(s)	44, 389, 479, 683, 792, 1192, 1216, 1261, 1403
Hpy166II	GTNNAC	3 cut(s)	380, 520, 1110
Hpy188I	TCNGA	6 cut(s)	164, 547, 759, 775, 912, 1132
Hpy188III	TCNNGA	8 cut(s)	121, 283, 731, 859, 922, 937, 1056, 1081
Hpy8I	GTNNAC	3 cut(s)	380, 520, 1110
Hpy99I	CGWCG	3 cut(s)	662, 1132, 1292
HpyAV	CCTTC	5 cut(s)	132, 239, 1145, 1171, 1220
HpyCH4III	ACNGT	6 cut(s)	62, 590, 726, 885, 1119, 1391
HpyCH4IV	ACGT	5 cut(s)	241, 366, 702, 948, 1112
HpyCH4V	TGCA	2 cut(s)	209, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	626, 983, 1253
HpyF3I	CTNAG	5 cut(s)	451, 514, 603, 1097, 1257
HpySE526I	ACGT	5 cut(s)	241, 366, 702, 948, 1112
Hsp92I	GRCGYC	1 cut(s)	1127
Hsp92II	CATG	4 cut(s)	286, 331, 361, 1352
HspAI	GCGC	1 cut(s)	1274
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	662
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	5 cut(s)	241, 366, 702, 948, 1112
MaeIII	GTNAC	6 cut(s)	65, 141, 653, 1113, 1249, 1457
MflI	RGATCY	9 cut(s)	5, 273, 345, 493, 532, 762, 855, 939, 1100
MhlI	GDGCHC	1 cut(s)	936
MluCI	AATT	4 cut(s)	443, 1034, 1429, 1447
MluI	ACGCGT	1 cut(s)	1026
MlyI	GAGTC	2 cut(s)	413, 815
MmeI	TCCRAC	3 cut(s)	463, 1110, 1344
MroXI	GAANNNNTTC	1 cut(s)	764
MspCI	CTTAAG	1 cut(s)	536
MvnI	CGCG	3 cut(s)	122, 1028, 1247
MwoI	GCNNNNNNNGC	3 cut(s)	626, 983, 1253
NlaIII	CATG	4 cut(s)	286, 331, 361, 1352
NlaIV	GGNNCC	2 cut(s)	7, 78
NmuCI	GTSAC	3 cut(s)	1113, 1249, 1457
NruI	TCGCGA	1 cut(s)	122
NspI	RCATGY	1 cut(s)	1352
PaeR7I	CTCGAG	1 cut(s)	935
PagI	TCATGA	1 cut(s)	282
PciI	ACATGT	1 cut(s)	1348
PciSI	GCTCTTC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	4 cut(s)	126, 866, 933, 954
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	2 cut(s)	508, 717
PinAI	ACCGGT	1 cut(s)	1003
Ple19I	CGATCG	1 cut(s)	915
PleI	GAGTC	2 cut(s)	413, 814
PpsI	GAGTC	2 cut(s)	413, 814
Ppu21I	YACGTR	1 cut(s)	703
PscI	ACATGT	1 cut(s)	1348
PshBI	ATTAAT	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	936
PspN4I	GGNNCC	2 cut(s)	7, 78
PspPI	GGNCC	1 cut(s)	76
PsrI	GAACNNNNNNTAC	2 cut(s)	564, 596
PsuI	RGATCY	9 cut(s)	5, 273, 345, 493, 532, 762, 855, 939, 1100
PvuI	CGATCG	1 cut(s)	915
RruI	TCGCGA	1 cut(s)	122
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SacI	GAGCTC	1 cut(s)	936
SapI	GCTCTTC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	413, 815
SduI	GDGCHC	1 cut(s)	936
Sfr274I	CTCGAG	1 cut(s)	935
SlaI	CTCGAG	1 cut(s)	935
SmlI	CTYRAG	2 cut(s)	536, 935
SmoI	CTYRAG	2 cut(s)	536, 935
Sse9I	AATT	4 cut(s)	443, 1034, 1429, 1447
SsiI	CCGC	4 cut(s)	375, 788, 1247, 1310
SspI	AATATT	1 cut(s)	1411
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	936
TaaI	ACNGT	6 cut(s)	62, 590, 726, 885, 1119, 1391
TaiI	ACGT	5 cut(s)	244, 369, 705, 951, 1115
TaqI	TCGA	6 cut(s)	860, 915, 927, 936, 1080, 1266
TasI	AATT	4 cut(s)	443, 1034, 1429, 1447
TfiI	GAWTC	2 cut(s)	508, 717
TscAI	CASTG	1 cut(s)	611
TseFI	GTSAC	3 cut(s)	1113, 1249, 1457
Tsp45I	GTSAC	3 cut(s)	1113, 1249, 1457
TspDTI	ATGAA	7 cut(s)	587, 761, 1027, 1184, 1190, 1356, 1458
TspGWI	ACGGA	5 cut(s)	34, 543, 675, 868, 1238
TspRI	CASTG	1 cut(s)	611
Vha464I	CTTAAG	1 cut(s)	536
VspI	ATTAAT	1 cut(s)	446
XapI	RAATTY	2 cut(s)	1034, 1447
XceI	RCATGY	1 cut(s)	1352
XhoI	CTCGAG	1 cut(s)	935
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.