Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006737

Physical Location & Seq

Genomic Coordinates Reverse (-)

36129519 .. 36130910

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGAAGAAGCAAGGCAACTACAACACCAGCCAGAAAAACCTAACACACATTCGGCGCCGAGAAACATTATATTTGACAAGTATGAGATGGGAAGGTTTTTGGGCCAAGGCACCTTCGCCAAAGTCTACCATGGCAGAAACCTCGCCACCAACGAAAGCGTAGCCATCAAAGTGATCAACAAGGAACACATCAAGAAAGAAGGTCTCGTGGAGCAGATCAAGCGCGAAATCTCTATCATGCACTTGGTTCATCACCCCCACATCGTCGAGCTCAAAGAAGTCATGGCCACAAAGACCAAGATCTTCTTCGTCATGGAGCACGTCAAGGGAGGCGAGCTCTTCGAAAAAATAGCCAAAGGGAAGCTCAAAGAAGATGTTGCACGTAAGTACTTTCAGCAATTGATAAGCGCCGTGGATTTCTGCCATAGCCGTGGCGTTTCGCACCGTGATTTGAAGCCAGAGAATCTTCTCCTAGACGAGAATGAAGACTTGAAAGTCTCGGATTTCGGGCTGTCTGCCTTGCCGGAGCAGCATTGGAGTGACGGCATGCTGCACACGCAGTGCGGCACGCCGGCGTATGTGGCTCCGGAGATTTTGAGGAAGAAAGGGTACGATGGAGCCAAGGCGGATTTATGGTCTTGTGGCGTCGTTTTGTTTGTTTTTCTTGCTGGATATCTGCCGTTTCAGGATGAGAATGTTATGAAGAGTTATAGGAAGGTTTTCAAGGGCGAGTACCAGTTTCCGCCATGGATTTCTGGGGATGCAAGGCGTTTGATAAATAAGCTTTTGGTTGTTGATCCAGAAAACAGGGCTTCCATTTCAGAAATAATGAAAGACCCTTGGTTTCAAAAGGGTTCTTCCAATTTAACCAAGCTGAGTGTAGATGAAGAAAATGAAAAGAAGGAGAAAACTGGGGACAAAAGTACTAGTACTACTACAAATGACTCATCAGAATCCCCACCATTCTTTAATGCCTTTGAGTTCATATCATCTATGTCATCCGGCTTCGACCTCTCAAACATGTTTGAGAAGAAGAAGAGGACGGGATCGATGTTCACCTCCAAGTGCTCTGCGGCGGCGATCAAGGCGAAGCTGCAGGTGGTGGCTGAGAGGTTGAATTTCAGAGTGGTGTCTGAGAAGGAATTCAAGATGAAATTGCTAGGGAAAGTGGAGGGAAGGAAAGGGAAGTTGGCGGTGGCGGCCGAGGTGTTTCGAGTAGCGGAGGAGGTGGCCGTGGTGGAGTTTTCGAAGCTGTCCGGCGACACTCTTGAGTACACAAAGTTCTGTGAGGAGGATGTGAGGCCTGCTCTTAAGGACATTGTGTGGACATGGCAAGGTGAGGAAAATAACTCTTCACAAAAAGTAGTTGGAAATGTTTGTCAACAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

463

Amino Acids

52.52

Weight (kDa)

8.3

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	28 - 282	6.9e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	30 - 278	3.1e-38	Protein tyrosine and serine/threonine kinase
NAF	PF03822	320 - 376	6.6e-18	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10930 AT5G25110
fragaria_vesca	FvH4_2g41050
malus_domestica	MD15G1039300.v1.1 MD17G1222800.v1.1
prunus_persica	Prupe.1G392900_v2.0.a1 Prupe.3G097900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133031 RchiOBHm_Chr6g0299521
rosa_laevigata	RLG00000011420 RLG00000019304
rosa_multiflora	Rmu_co8431815.1_g000001 Rmu_sc0006821.1_g000008 Rmu_sc0008770.1_g000015
rosa_roxburghii	Rroxscaffold_2G00111560 Rroxscaffold_7G00168590
rosa_rugosa	Rorug02G0309200 Rorug06G0289500
rosa_samantha	Rh2BG367400 Rh2CG344800 Rh2DG384400 Rh6AG400800 Rh6BG409400 Rh6DG401800
rosa_wichuraiana	Rw2G029410 Rw6G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1087
AasI	GACNNNNNNGTC	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	1087
AccB1I	GGYRCC	2 cut(s)	55, 110
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	586
AciI	CCGC	8 cut(s)	564, 626, 743, 1073, 1076, 1193, 1199, 1220
AclWI	GGATC	2 cut(s)	791, 1054
AcoI	YGGCCR	3 cut(s)	285, 1200, 1230
AcsI	RAATTY	2 cut(s)	1117, 1142
AcyI	GRCGYC	2 cut(s)	56, 645
AdeI	CACNNNGTG	1 cut(s)	561
AfaI	GTAC	6 cut(s)	389, 611, 734, 925, 931, 1274
AflII	CTTAAG	1 cut(s)	1310
AflIII	ACRYGT	1 cut(s)	1020
AgsI	TTSAA	6 cut(s)	454, 493, 724, 848, 1117, 1147
AhlI	ACTAGT	1 cut(s)	926
AjiI	CACGTC	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	4 cut(s)	290, 322, 1172, 1204
AluBI	AGCT	7 cut(s)	271, 337, 364, 784, 874, 1093, 1252
AluI	AGCT	7 cut(s)	271, 337, 364, 784, 874, 1093, 1252
Alw21I	GWGCWC	4 cut(s)	273, 321, 339, 1070
Alw26I	GTCTC	2 cut(s)	209, 502
AlwI	GGATC	2 cut(s)	791, 1054
Aor13HI	TCCGGA	1 cut(s)	586
AoxI	GGCC	5 cut(s)	103, 285, 1200, 1230, 1301
ApeKI	GCWGC	3 cut(s)	529, 550, 1093
ApoI	RAATTY	2 cut(s)	1117, 1142
Asp700I	GAANNNNTTC	2 cut(s)	719, 1142
AspLEI	GCGC	3 cut(s)	58, 225, 410
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	245, 1048, 1349
AsuII	TTCGAA	2 cut(s)	342, 1247
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	2 cut(s)	55, 110
BanII	GRGCYC	2 cut(s)	273, 339
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	4 cut(s)	273, 321, 339, 1070
BbvI	GCAGC	3 cut(s)	537, 541, 1080
BccI	CCATC	3 cut(s)	82, 173, 608
BceAI	ACGGC	5 cut(s)	395, 414, 559, 664, 1217
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	209, 502
BcuI	ACTAGT	1 cut(s)	926
BfaI	CTAG	3 cut(s)	473, 927, 1160
BfmI	CTRYAG	1 cut(s)	1094
BfoI	RGCGCY	2 cut(s)	59, 411
BfrI	CTTAAG	1 cut(s)	1310
BfuAI	ACCTGC	1 cut(s)	1087
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	7 cut(s)	530, 551, 565, 1074, 1077, 1094, 1200
BlsI	GCNGC	7 cut(s)	531, 552, 566, 1075, 1078, 1095, 1201
BmcAI	AGTACT	3 cut(s)	389, 925, 931
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	4 cut(s)	57, 112, 585, 619
BmrI	ACTGGG	1 cut(s)	921
BmsI	GCATC	1 cut(s)	751
BmuI	ACTGGG	1 cut(s)	921
BpiI	GAAGAC	1 cut(s)	492
BplI	GAGNNNNNCTC	4 cut(s)	321, 353, 1291, 1323
Bpu14I	TTCGAA	2 cut(s)	342, 1247
BpuEI	CTTGAG	1 cut(s)	1289
Bsa29I	ATCGAT	1 cut(s)	1049
BsaAI	YACGTR	1 cut(s)	383
BsaHI	GRCGYC	2 cut(s)	56, 645
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	9 cut(s)	106, 130, 411, 430, 621, 746, 839, 1203, 1233
BsaWI	WCCGGW	1 cut(s)	586
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	2 cut(s)	736, 916
BseAI	TCCGGA	1 cut(s)	586
BseCI	ATCGAT	1 cut(s)	1049
BseDI	CCNNGG	9 cut(s)	106, 130, 411, 430, 621, 746, 839, 1203, 1233
BseGI	GGATG	4 cut(s)	694, 766, 998, 1300
BseMII	CTCAG	3 cut(s)	866, 1098, 1125
BseNI	ACTGG	2 cut(s)	736, 916
BseRI	GAGGAG	2 cut(s)	1238, 1304
BseX3I	CGGCCG	1 cut(s)	1200
BseXI	GCAGC	3 cut(s)	537, 541, 1080
BsgI	GTGCAG	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	1203
BshFI	GGCC	5 cut(s)	105, 287, 1202, 1232, 1303
BshNI	GGYRCC	2 cut(s)	55, 110
BshVI	ATCGAT	1 cut(s)	1049
BsiEI	CGRYCG	1 cut(s)	1203
BsiHKAI	GWGCWC	4 cut(s)	273, 321, 339, 1070
BsiSI	CCGG	5 cut(s)	524, 572, 587, 1002, 1257
BslFI	GGGAC	1 cut(s)	929
BsmAI	GTCTC	2 cut(s)	209, 502
BsmFI	GGGAC	1 cut(s)	929
BsnI	GGCC	5 cut(s)	105, 287, 1202, 1232, 1303
Bso31I	GGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	2 cut(s)	342, 1247
Bsp1286I	GDGCHC	4 cut(s)	273, 321, 339, 1070
Bsp13I	TCCGGA	1 cut(s)	586
Bsp143I	GATC	6 cut(s)	174, 216, 300, 796, 1046, 1080
Bsp19I	CCATGG	2 cut(s)	130, 746
BspACI	CCGC	8 cut(s)	564, 626, 743, 1073, 1076, 1193, 1199, 1220
BspANI	GGCC	5 cut(s)	105, 287, 1202, 1232, 1303
BspCNI	CTCAG	3 cut(s)	867, 1099, 1126
BspDI	ATCGAT	1 cut(s)	1049
BspEI	TCCGGA	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	4 cut(s)	57, 112, 585, 619
BspMAI	CTGCAG	1 cut(s)	1098
BspMI	ACCTGC	1 cut(s)	1087
BspPI	GGATC	2 cut(s)	791, 1054
BspQI	GCTCTTC	1 cut(s)	344
BspT104I	TTCGAA	2 cut(s)	342, 1247
BspT107I	GGYRCC	2 cut(s)	55, 110
BspTI	CTTAAG	1 cut(s)	1310
BspTNI	GGTCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	736, 916
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	9 cut(s)	106, 130, 411, 430, 621, 746, 839, 1203, 1233
BssMI	GATC	6 cut(s)	174, 216, 300, 796, 1046, 1080
BssNI	GRCGYC	2 cut(s)	56, 645
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	5 cut(s)	106, 130, 621, 746, 839
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	4 cut(s)	344, 698, 1031, 1357
BstACI	GRCGYC	2 cut(s)	56, 645
BstAFI	CTTAAG	1 cut(s)	1310
BstBAI	YACGTR	1 cut(s)	383
BstBI	TTCGAA	2 cut(s)	342, 1247
BstC8I	GCNNGC	5 cut(s)	335, 548, 569, 573, 1305
BstDEI	CTNAG	3 cut(s)	875, 1107, 1134
BstDSI	CCRYGG	5 cut(s)	130, 411, 430, 746, 1233
BstF5I	GGATG	4 cut(s)	694, 766, 998, 1300
BstFNI	CGCG	1 cut(s)	225
BstH2I	RGCGCY	2 cut(s)	59, 411
BstHHI	GCGC	3 cut(s)	58, 225, 410
BstKTI	GATC	6 cut(s)	177, 219, 303, 799, 1049, 1083
BstMAI	GTCTC	2 cut(s)	209, 502
BstMBI	GATC	6 cut(s)	174, 216, 300, 796, 1046, 1080
BstMCI	CGRYCG	1 cut(s)	1203
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 529, 556, 581, 1085, 1199
BstNSI	RCATGY	2 cut(s)	550, 1024
BstSFI	CTRYAG	1 cut(s)	1094
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	537, 541, 1080
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	300
BstZI	CGGCCG	1 cut(s)	1200
Bsu15I	ATCGAT	1 cut(s)	1049
BsuRI	GGCC	5 cut(s)	105, 287, 1202, 1232, 1303
BsuTUI	ATCGAT	1 cut(s)	1049
BtgI	CCRYGG	5 cut(s)	130, 411, 430, 746, 1233
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	4 cut(s)	694, 766, 998, 1300
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	1 cut(s)	566
BveI	ACCTGC	1 cut(s)	1087
Cac8I	GCNNGC	5 cut(s)	335, 548, 569, 573, 1305
CfoI	GCGC	3 cut(s)	58, 225, 410
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	1049
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	6 cut(s)	388, 610, 733, 924, 930, 1273
CviAII	CATG	8 cut(s)	131, 238, 283, 313, 547, 747, 1021, 1329
CviQI	GTAC	6 cut(s)	388, 610, 733, 924, 930, 1273
DdeI	CTNAG	3 cut(s)	875, 1107, 1134
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	6 cut(s)	176, 218, 302, 798, 1048, 1082
DpnII	GATC	6 cut(s)	174, 216, 300, 796, 1046, 1080
DraIII	CACNNNGTG	1 cut(s)	561
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
EaeI	YGGCCR	3 cut(s)	285, 1200, 1230
EagI	CGGCCG	1 cut(s)	1200
Eam1104I	CTCTTC	4 cut(s)	344, 698, 1031, 1357
EarI	CTCTTC	4 cut(s)	344, 698, 1031, 1357
EciI	GGCGGA	2 cut(s)	641, 732
Ecl136II	GAGCTC	2 cut(s)	271, 337
EclXI	CGGCCG	1 cut(s)	1200
Eco130I	CCWWGG	5 cut(s)	106, 130, 621, 746, 839
Eco147I	AGGCCT	1 cut(s)	1303
Eco24I	GRGCYC	2 cut(s)	273, 339
Eco31I	GGTCTC	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	674
Eco52I	CGGCCG	1 cut(s)	1200
Eco53kI	GAGCTC	2 cut(s)	271, 337
EcoICRI	GAGCTC	2 cut(s)	271, 337
EcoRI	GAATTC	1 cut(s)	1142
EcoRV	GATATC	1 cut(s)	674
EcoT14I	CCWWGG	5 cut(s)	106, 130, 621, 746, 839
EcoT38I	GRGCYC	2 cut(s)	273, 339
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
ErhI	CCWWGG	5 cut(s)	106, 130, 621, 746, 839
FaeI	CATG	8 cut(s)	134, 241, 286, 316, 550, 750, 1024, 1332
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	8 cut(s)	130, 237, 282, 312, 546, 746, 1020, 1328
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	7 cut(s)	530, 551, 565, 1074, 1077, 1094, 1200
FokI	GGATG	4 cut(s)	701, 773, 985, 1307
FriOI	GRGCYC	2 cut(s)	273, 339
Fsp4HI	GCNGC	7 cut(s)	530, 551, 565, 1074, 1077, 1094, 1200
FspBI	CTAG	3 cut(s)	473, 927, 1160
GlaI	GCGC	3 cut(s)	57, 224, 409
GluI	GCNGC	7 cut(s)	530, 551, 565, 1074, 1077, 1094, 1200
HaeII	RGCGCY	2 cut(s)	59, 411
HaeIII	GGCC	5 cut(s)	105, 287, 1202, 1232, 1303
HapII	CCGG	5 cut(s)	524, 572, 587, 1002, 1257
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	3 cut(s)	58, 225, 410
Hin1I	GRCGYC	2 cut(s)	56, 645
Hin1II	CATG	8 cut(s)	134, 241, 286, 316, 550, 750, 1024, 1332
Hin6I	GCGC	3 cut(s)	56, 223, 408
HinP1I	GCGC	3 cut(s)	56, 223, 408
HincII	GTYRAC	1 cut(s)	1382
HindII	GTYRAC	1 cut(s)	1382
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	3 cut(s)	463, 944, 953
HpaII	CCGG	5 cut(s)	524, 572, 587, 1002, 1257
HphI	GGTGA	3 cut(s)	245, 1048, 1349
Hpy166II	GTNNAC	5 cut(s)	127, 1056, 1275, 1326, 1382
Hpy188I	TCNGA	5 cut(s)	502, 823, 952, 1124, 1135
Hpy188III	TCNNGA	6 cut(s)	193, 587, 686, 800, 1147, 1268
Hpy8I	GTNNAC	5 cut(s)	127, 1056, 1275, 1326, 1382
Hpy99I	CGWCG	2 cut(s)	269, 650
HpyAV	CCTTC	7 cut(s)	87, 124, 194, 709, 895, 1132, 1170
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	2 cut(s)	321, 382
HpyCH4V	TGCA	5 cut(s)	241, 380, 553, 764, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 529, 556, 581, 1085, 1199
HpyF3I	CTNAG	3 cut(s)	875, 1107, 1134
HpySE526I	ACGT	2 cut(s)	321, 382
Hsp92I	GRCGYC	2 cut(s)	56, 645
Hsp92II	CATG	8 cut(s)	134, 241, 286, 316, 550, 750, 1024, 1332
HspAI	GCGC	3 cut(s)	56, 223, 408
KasI	GGCGCC	1 cut(s)	55
Kpn2I	TCCGGA	1 cut(s)	586
KroI	GCCGGC	1 cut(s)	571
KroNI	GCCGGC	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	6 cut(s)	174, 216, 300, 796, 1046, 1080
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	5 cut(s)	211, 316, 526, 589, 617
Lsp1109I	GCAGC	3 cut(s)	537, 541, 1080
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	3 cut(s)	473, 927, 1160
MaeII	ACGT	2 cut(s)	321, 382
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	6 cut(s)	176, 218, 302, 798, 1048, 1082
MboI	GATC	6 cut(s)	174, 216, 300, 796, 1046, 1080
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	4 cut(s)	273, 321, 339, 1070
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	5 cut(s)	398, 862, 1117, 1142, 1154
MluNI	TGGCCA	1 cut(s)	287
Mly113I	GGCGCC	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	938
MmeI	TCCRAC	1 cut(s)	1348
Mox20I	TGGCCA	1 cut(s)	287
MreI	CGCCGGCG	1 cut(s)	571
MroI	TCCGGA	1 cut(s)	586
MroNI	GCCGGC	1 cut(s)	571
MroXI	GAANNNNTTC	2 cut(s)	719, 1142
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	3 cut(s)	866, 969, 1311
MslI	CAYNNNNRTG	3 cut(s)	170, 429, 537
Msp20I	TGGCCA	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	1310
MspI	CCGG	5 cut(s)	524, 572, 587, 1002, 1257
MunI	CAATTG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	6 cut(s)	220, 529, 556, 581, 1085, 1199
NaeI	GCCGGC	1 cut(s)	573
NarI	GGCGCC	1 cut(s)	56
NcoI	CCATGG	2 cut(s)	130, 746
NdeII	GATC	6 cut(s)	174, 216, 300, 796, 1046, 1080
NgoMIV	GCCGGC	1 cut(s)	571
NlaIII	CATG	8 cut(s)	134, 241, 286, 316, 550, 750, 1024, 1332
NlaIV	GGNNCC	4 cut(s)	57, 112, 585, 619
NmeAIII	GCCGAG	2 cut(s)	84, 1228
NmuCI	GTSAC	1 cut(s)	539
NspI	RCATGY	2 cut(s)	550, 1024
NspV	TTCGAA	2 cut(s)	342, 1247
PaeI	GCATGC	1 cut(s)	550
PaqCI	CACCTGC	1 cut(s)	1087
PceI	AGGCCT	1 cut(s)	1303
PciI	ACATGT	1 cut(s)	1020
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	573
PdmI	GAANNNNTTC	2 cut(s)	719, 1142
PfeI	GAWTC	2 cut(s)	463, 953
PkrI	GCNGC	7 cut(s)	531, 552, 566, 1075, 1078, 1095, 1201
PleI	GAGTC	1 cut(s)	938
PluTI	GGCGCC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	938
Ppu21I	YACGTR	1 cut(s)	383
PscI	ACATGT	1 cut(s)	1020
Psp124BI	GAGCTC	2 cut(s)	273, 339
PspN4I	GGNNCC	4 cut(s)	57, 112, 585, 619
PspPI	GGNCC	1 cut(s)	103
PsrI	GAACNNNNNNTAC	2 cut(s)	1265, 1297
PstI	CTGCAG	1 cut(s)	1098
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	6 cut(s)	389, 611, 734, 925, 931, 1274
RsaNI	GTAC	6 cut(s)	388, 610, 733, 924, 930, 1273
RseI	CAYNNNNRTG	3 cut(s)	170, 429, 537
SacI	GAGCTC	2 cut(s)	273, 339
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	866, 969, 1311
SatI	GCNGC	7 cut(s)	530, 551, 565, 1074, 1077, 1094, 1200
Sau3AI	GATC	6 cut(s)	174, 216, 300, 796, 1046, 1080
Sau96I	GGNCC	1 cut(s)	103
ScaI	AGTACT	3 cut(s)	389, 925, 931
SchI	GAGTC	1 cut(s)	938
SduI	GDGCHC	4 cut(s)	273, 321, 339, 1070
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	1094
SfoI	GGCGCC	1 cut(s)	57
SfuI	TTCGAA	2 cut(s)	342, 1247
SgrAI	CRCCGGYG	1 cut(s)	571
SmiMI	CAYNNNNRTG	3 cut(s)	170, 429, 537
SmlI	CTYRAG	2 cut(s)	1268, 1310
SmoI	CTYRAG	2 cut(s)	1268, 1310
SpeI	ACTAGT	1 cut(s)	926
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	5 cut(s)	398, 862, 1117, 1142, 1154
SseBI	AGGCCT	1 cut(s)	1303
SsiI	CCGC	8 cut(s)	564, 626, 743, 1073, 1076, 1193, 1199, 1220
SspDI	GGCGCC	1 cut(s)	55
SspMI	CTAG	3 cut(s)	473, 927, 1160
SstI	GAGCTC	2 cut(s)	273, 339
StuI	AGGCCT	1 cut(s)	1303
StyI	CCWWGG	5 cut(s)	106, 130, 621, 746, 839
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	2 cut(s)	324, 385
TaqI	TCGA	6 cut(s)	267, 342, 1008, 1049, 1213, 1247
TasI	AATT	5 cut(s)	398, 862, 1117, 1142, 1154
TatI	WGTACW	4 cut(s)	387, 923, 929, 1272
TauI	GCSGC	4 cut(s)	567, 1076, 1079, 1202
TfiI	GAWTC	2 cut(s)	463, 953
Tru1I	TTAA	3 cut(s)	866, 969, 1311
Tru9I	TTAA	3 cut(s)	866, 969, 1311
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	3 cut(s)	529, 550, 1093
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	8 cut(s)	239, 498, 716, 845, 900, 909, 973, 1166
TspRI	CASTG	1 cut(s)	566
Vha464I	CTTAAG	1 cut(s)	1310
XapI	RAATTY	2 cut(s)	1117, 1142
XceI	RCATGY	2 cut(s)	550, 1024
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	2 cut(s)	719, 1142
XspI	CTAG	3 cut(s)	473, 927, 1160
ZrmI	AGTACT	3 cut(s)	389, 925, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.