AT5G10950

mitotic sister chromatid cohesion

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
3459217 .. 3461824
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10950.1

Sequence Viewer

Length: 1188 bp
ATGGTTGGTTCTAGGAAGCGTTCATCAGCCAAGAACAGACTTGTTTCTTCTTCAACTCGTTCTTCTGGGAAGGATAAGGTTTCTGATGCTCGTAAATATGGTGAAGCCTTGGTGGGTTCAAGGATACGAGTTTGGTGGCCGATGGACAGCAAATTCTATAAGGGTGTGGTGGATTCCTATGTCTCTTCCAAGAAGAAACATCGGGTTTTCTATGAAGATGGTGATAAAGAGACCTTGGATCTGAAGAAGGAGAGATGGGAGTTGATTGAAGAAGATGATGCTGAATCTGAATCTGATGAGATCTCCCTACAGGAGGAATCTGCTGGTGAGAGTTCTGAAGGCACTCCAGAACCGCCTAAAGGGAAAGGGAAGGCATCTTTAAAAGGAAGGACGGATGAAGCTATGCCCAAAAAGAAACAGAAGATAGATTCTTCATCAAAGAGCAAGGCCAAAGAGGTGGAGAAGAAGGCCTCAAAGCCCGAAACTGAGAAAAATGGCAAAATGGGTGATATTGGTGGGAAGATTGTAGCAGCGGCATCACGCATGAGTGAAAGGTTTCGGAGCAAGGGGAATGTGGATCAAAAAGAGACATCAAAGGCCTCGAAAAAACCAAAGATGTCTTCAAAGTTGACCAAGAGGAAACACACTGATGACCAAGATGAAGATGAAGAAGCTGGTGATGATATTGATACTTCTAGCGAAGAGGCGAAGCCTAAGGTGTTAAAATCCTGCAACTCCAATGCTGATGAAGTTGCTGAAAATTCTTCTGATGAAGATGAGCCCAAGGTTCTAAAAACCAACAACTCTAAGGCTGATAAAGATGAAGATGAAGAGGAGAATGAAACATCTGATGATGAGGCTGAGCCCAAGGCCCTGAAATTGAGCAACTCCAACTCTGATAATGGTGAAAACAATTCATCTGATGATGAGAAAGAGATAACAATATCGAAGATCACCTCAAAAAAGATTAAGAGTAATACCGCTGATGAAGAAAATGGTGACAATGAAGATGGGGAAAAAGCTGTTGATGAAATGTCTGATGGAGAGCCGTTGGTGAGCTTCTTGAAGAAGTCACCAGAGGGAATTGATGCGAAGAGGAAAAAAATGAAGGGGAAGAAGGAGGAAGAGGAAGAGGAAGGAGAAGAAAATGCTGGAAAAGATACGAAAGCGGAAGAAGCGTCGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

43.62

Weight (kDa)

5.02

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10950
rosa_chinensis RchiOBHm_Chr7g0241701
rosa_multiflora Rmu_sc0002268.1_g000005 Rmu_sc0017195.1_g000001
rosa_roxburghii Rroxscaffold_1G00054410
rosa_rugosa Rorug07G0346500
rosa_samantha Rh2BG003900 Rh7AG501000 Rh7BG472200
rosa_wichuraiana Rw7G042330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 353, 533, 981, 1169
AclWI GGATC 2 cut(s) 246, 585
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 2 cut(s) 152, 760
AcuI CTGAAG 2 cut(s) 263, 357
AfiI CCNNNNNNNGG 2 cut(s) 313, 359
AgsI TTSAA 5 cut(s) 54, 120, 269, 624, 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 604, 636
AluBI AGCT 4 cut(s) 401, 674, 1022, 1059
AluI AGCT 4 cut(s) 401, 674, 1022, 1059
Alw26I GTCTC 3 cut(s) 187, 224, 581
AlwI GGATC 2 cut(s) 246, 585
AoxI GGCC 5 cut(s) 137, 447, 468, 597, 870
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 2 cut(s) 152, 760
Asp700I GAANNNNTTC 1 cut(s) 555
AspS9I GGNCC 1 cut(s) 871
AxyI CCTNAGG 1 cut(s) 714
BanII GRGCYC 2 cut(s) 783, 867
BbsI GAAGAC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 542
BccI CCATC 5 cut(s) 136, 212, 249, 1004, 1034
BceAI ACGGC 1 cut(s) 1033
BciVI GTATCC 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 187, 224, 581
BfaI CTAG 2 cut(s) 12, 696
BfmI CTRYAG 1 cut(s) 308
BfuI GTATCC 1 cut(s) 117
BglII AGATCT 1 cut(s) 300
BisI GCNGC 2 cut(s) 531, 534
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 2 cut(s) 532, 535
BmgT120I GGNCC 1 cut(s) 871
BmsI GCATC 5 cut(s) 76, 268, 383, 545, 1078
BpiI GAAGAC 1 cut(s) 612
BpmI CTGGAG 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 4 cut(s) 108, 234, 783, 867
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 359
Bse21I CCTNAGG 1 cut(s) 714
BseDI CCNNGG 4 cut(s) 108, 234, 783, 867
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 2 cut(s) 313, 359
BseMII CTCAG 2 cut(s) 477, 852
BseRI GAGGAG 1 cut(s) 848
BseXI GCAGC 1 cut(s) 542
BshFI GGCC 5 cut(s) 139, 449, 470, 599, 872
BslI CCNNNNNNNGG 2 cut(s) 313, 359
BsmAI GTCTC 3 cut(s) 187, 224, 581
BsnI GGCC 5 cut(s) 139, 449, 470, 599, 872
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 783, 867
Bsp143I GATC 4 cut(s) 238, 300, 577, 951
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 4 cut(s) 353, 533, 981, 1169
BspANI GGCC 5 cut(s) 139, 449, 470, 599, 872
BspCNI CTCAG 2 cut(s) 478, 853
BspPI GGATC 2 cut(s) 246, 585
BspTNI GGTCTC 1 cut(s) 224
BssECI CCNNGG 4 cut(s) 108, 234, 783, 867
BssMI GATC 4 cut(s) 238, 300, 577, 951
BssT1I CCWWGG 4 cut(s) 108, 234, 783, 867
Bst6I CTCTTC 6 cut(s) 190, 696, 825, 1088, 1119, 1125
BstDEI CTNAG 4 cut(s) 486, 714, 807, 861
BstENI CCTNNNNNAGG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 4 cut(s) 241, 303, 580, 954
BstMAI GTCTC 3 cut(s) 187, 224, 581
BstMBI GATC 4 cut(s) 238, 300, 577, 951
BstMWI GCNNNNNNNGC 1 cut(s) 1175
BstSFI CTRYAG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 542
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 2 cut(s) 238, 300
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 2 cut(s) 238, 300
Bsu36I CCTNAGG 1 cut(s) 714
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 5 cut(s) 139, 449, 470, 599, 872
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 871
CseI GACGC 1 cut(s) 1167
CviAII CATG 1 cut(s) 544
DdeI CTNAG 4 cut(s) 486, 714, 807, 861
DpnI GATC 4 cut(s) 240, 302, 579, 953
DpnII GATC 4 cut(s) 238, 300, 577, 951
DraI TTTAAA 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 6 cut(s) 190, 696, 825, 1088, 1119, 1125
EarI CTCTTC 6 cut(s) 190, 696, 825, 1088, 1119, 1125
Eco130I CCWWGG 4 cut(s) 108, 234, 783, 867
Eco147I AGGCCT 2 cut(s) 470, 599
Eco24I GRGCYC 2 cut(s) 783, 867
Eco31I GGTCTC 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 263, 357
Eco81I CCTNAGG 1 cut(s) 714
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 871
EcoT14I CCWWGG 4 cut(s) 108, 234, 783, 867
EcoT38I GRGCYC 2 cut(s) 783, 867
ErhI CCWWGG 4 cut(s) 108, 234, 783, 867
FaeI CATG 1 cut(s) 547
FaiI YATR 6 cut(s) 99, 159, 180, 213, 404, 545
FatI CATG 1 cut(s) 543
Fnu4HI GCNGC 2 cut(s) 531, 534
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 2 cut(s) 783, 867
Fsp4HI GCNGC 2 cut(s) 531, 534
FspBI CTAG 2 cut(s) 12, 696
GluI GCNGC 2 cut(s) 531, 534
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 5 cut(s) 139, 449, 470, 599, 872
HgaI GACGC 1 cut(s) 1167
Hin1II CATG 1 cut(s) 547
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 5 cut(s) 173, 284, 290, 317, 428
Hpy166II GTNNAC 1 cut(s) 630
Hpy188III TCNNGA 2 cut(s) 347, 1063
Hpy8I GTNNAC 1 cut(s) 630
Hpy99I CGWCG 2 cut(s) 1183, 1186
HpyAV CCTTC 9 cut(s) 64, 241, 332, 364, 381, 460, 1102, 1111, 1130
HpyCH4V TGCA 1 cut(s) 732
HpyF10VI GCNNNNNNNGC 1 cut(s) 1175
HpyF3I CTNAG 4 cut(s) 486, 714, 807, 861
Hsp92II CATG 1 cut(s) 547
Kzo9I GATC 4 cut(s) 238, 300, 577, 951
LmnI GCTCC 1 cut(s) 561
LpnPI CCDG 9 cut(s) 51, 296, 309, 360, 660, 742, 887, 1089, 1137
Lsp1109I GCAGC 1 cut(s) 542
LweI GCATC 5 cut(s) 76, 268, 383, 545, 1078
MaeI CTAG 2 cut(s) 12, 696
MaeIII GTNAC 2 cut(s) 998, 1071
MalI GATC 4 cut(s) 240, 302, 579, 953
MboI GATC 4 cut(s) 238, 300, 577, 951
MflI RGATCY 2 cut(s) 238, 300
MhlI GDGCHC 2 cut(s) 783, 867
MluCI AATT 5 cut(s) 152, 760, 878, 913, 1083
MmeI TCCRAC 1 cut(s) 915
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 3 cut(s) 380, 722, 969
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 533, 983
MwoI GCNNNNNNNGC 1 cut(s) 1175
NdeII GATC 4 cut(s) 238, 300, 577, 951
NlaIII CATG 1 cut(s) 547
NmuCI GTSAC 2 cut(s) 998, 1071
PceI AGGCCT 2 cut(s) 470, 599
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 5 cut(s) 173, 284, 290, 317, 428
PkrI GCNGC 2 cut(s) 532, 535
PspPI GGNCC 1 cut(s) 871
PsuI RGATCY 2 cut(s) 238, 300
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 3 cut(s) 380, 722, 969
SatI GCNGC 2 cut(s) 531, 534
Sau3AI GATC 4 cut(s) 238, 300, 577, 951
Sau96I GGNCC 1 cut(s) 871
SduI GDGCHC 2 cut(s) 783, 867
SfaNI GCATC 5 cut(s) 76, 268, 383, 545, 1078
SfcI CTRYAG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 648
Sse9I AATT 5 cut(s) 152, 760, 878, 913, 1083
SseBI AGGCCT 2 cut(s) 470, 599
SsiI CCGC 4 cut(s) 353, 533, 981, 1169
SspMI CTAG 2 cut(s) 12, 696
StuI AGGCCT 2 cut(s) 470, 599
StyI CCWWGG 4 cut(s) 108, 234, 783, 867
TaqI TCGA 2 cut(s) 602, 947
TasI AATT 5 cut(s) 152, 760, 878, 913, 1083
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 5 cut(s) 173, 284, 290, 317, 428
Tru1I TTAA 3 cut(s) 380, 722, 969
Tru9I TTAA 3 cut(s) 380, 722, 969
TscAI CASTG 1 cut(s) 652
TseFI GTSAC 2 cut(s) 998, 1071
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 2 cut(s) 998, 1071
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 1 cut(s) 652
XagI CCTNNNNNAGG 1 cut(s) 311
XapI RAATTY 2 cut(s) 152, 760
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 2 cut(s) 12, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.