Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018287

Physical Location & Seq

Genomic Coordinates Reverse (-)

339468 .. 339980

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCTTCGCCTCTCCAATCCAAGCCCAATCTCAATCCCAAGAAATTGTTGTACGGCCAAGAGGTCGTCGGCAAGAGGATTAAGGTGTACTGGGCGAGTGATAAGGCCTGGTACGAAGGCTGTGTCAAGTTGTTCAATAAGGAGAGTGGCAAGCACTTACTTCAGTATGATGGTGACGAAGAGACTTTGGATTTGGCCACCGAGAAAATCGAATTGCTTCAACAGACCGTCCAGACCTTTAAGCGCTTGCAGCGAGATCCTTTGCCCACTCCCGAGGCTCCGGTGGCGGAGGAGGACGAGGAAGCCAGTAATGATGATGATGATGATGATTCCGGCGATGAGGATTGGGGAAAGAGTGTGGAAAGGAAGGTGGTTGAGCCAGAGGAGGAAGACGAGGTTATGGAATTGGAGGATGAGCATGATGATGAGGAAGTGCCCAAGTTCAAAGGAAGGCGCGGCGGTTCCGGTGGTAAACTGAAGTTGAGCGGTGGAGGGAATTTGGGCGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

170

Amino Acids

19.05

Weight (kDa)

4.46

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10950
rosa_chinensis	RchiOBHm_Chr7g0241701
rosa_multiflora	Rmu_sc0002268.1_g000005 Rmu_sc0017195.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054410
rosa_rugosa	Rorug07G0346500
rosa_samantha	Rh2BG003900 Rh7AG501000 Rh7BG472200
rosa_wichuraiana	Rw7G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	486
AccII	CGCG	1 cut(s)	456
AciI	CCGC	4 cut(s)	287, 456, 459, 486
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	2 cut(s)	55, 195
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	2 cut(s)	146, 497
AfaI	GTAC	3 cut(s)	53, 89, 113
AfeI	AGCGCT	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	136, 221, 445
AjnI	CCWGG	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	245
AoxI	GGCC	3 cut(s)	55, 105, 195
ApeKI	GCWGC	2 cut(s)	250, 506
ApoI	RAATTY	1 cut(s)	496
ArsI	GACNNNNNNTTYG	4 cut(s)	108, 140, 175, 207
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	3 cut(s)	246, 456, 506
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	438
BalI	TGGCCA	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	262, 493
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	511
BfoI	RGCGCY	2 cut(s)	247, 507
BisI	GCNGC	3 cut(s)	251, 457, 507
BlsI	GCNGC	3 cut(s)	252, 458, 508
Bme1390I	CCNGG	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	279, 463
BmrFI	CCNGG	1 cut(s)	109
BmrI	ACTGGG	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	2 cut(s)	280, 464
Bse1I	ACTGG	2 cut(s)	95, 306
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	418
BseNI	ACTGG	2 cut(s)	95, 306
BseRI	GAGGAG	2 cut(s)	305, 398
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	262, 493
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	57, 107, 197
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	281, 333, 465
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	57, 107, 197
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	4 cut(s)	287, 456, 459, 486
BspANI	GGCC	3 cut(s)	57, 107, 197
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	279, 463
BspPI	GGATC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	95, 306
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	152, 248
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	2 cut(s)	247, 507
BstHHI	GCGC	3 cut(s)	246, 456, 506
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 284
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	262, 493
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	57, 107, 197
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	152, 248
CfoI	GCGC	3 cut(s)	246, 456, 506
Csp6I	GTAC	3 cut(s)	52, 88, 112
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	8 cut(s)	25, 57, 107, 120, 197, 278, 305, 379
CviKI_1	RGCY	8 cut(s)	25, 57, 107, 120, 197, 278, 305, 379
CviQI	GTAC	3 cut(s)	52, 88, 112
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	2 cut(s)	55, 195
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	302
Eco147I	AGGCCT	1 cut(s)	107
Eco47III	AGCGCT	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	146, 497
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	422
FaiI	YATR	3 cut(s)	168, 401, 420
FatI	CATG	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	251, 457, 507
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	3 cut(s)	251, 457, 507
FspBI	CTAG	1 cut(s)	511
GlaI	GCGC	3 cut(s)	245, 455, 505
GluI	GCNGC	3 cut(s)	251, 457, 507
HaeII	RGCGCY	2 cut(s)	247, 507
HaeIII	GGCC	3 cut(s)	57, 107, 197
HapII	CCGG	3 cut(s)	281, 333, 465
HhaI	GCGC	3 cut(s)	246, 456, 506
Hin1II	CATG	1 cut(s)	422
Hin6I	GCGC	3 cut(s)	244, 454, 504
HinP1I	GCGC	3 cut(s)	244, 454, 504
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	3 cut(s)	281, 333, 465
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	88, 473
Hpy188III	TCNNGA	2 cut(s)	232, 272
Hpy8I	GTNNAC	2 cut(s)	88, 473
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	4 cut(s)	15, 110, 361, 444
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 284
Hsp92II	CATG	1 cut(s)	422
HspAI	GCGC	3 cut(s)	244, 454, 504
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	9 cut(s)	76, 94, 121, 245, 294, 319, 346, 393, 478
Lsp1109I	GCAGC	2 cut(s)	262, 493
MaeI	CTAG	1 cut(s)	511
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	258
MbiI	CCGCTC	1 cut(s)	486
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	191, 401
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	438
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	4 cut(s)	44, 212, 404, 496
MluNI	TGGCCA	1 cut(s)	197
Mox20I	TGGCCA	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	2 cut(s)	81, 240
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	197
MspI	CCGG	3 cut(s)	281, 333, 465
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	250, 284
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	2 cut(s)	279, 463
NmuCI	GTSAC	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	252, 458, 508
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	279, 463
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	3 cut(s)	53, 89, 113
RsaNI	GTAC	3 cut(s)	52, 88, 112
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	81, 240
SatI	GCNGC	3 cut(s)	251, 457, 507
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	5 cut(s)	66, 87, 239, 372, 399
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	4 cut(s)	44, 212, 404, 496
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	4 cut(s)	287, 456, 459, 486
SspMI	CTAG	1 cut(s)	511
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	210
TasI	AATT	4 cut(s)	44, 212, 404, 496
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	81, 240
Tru9I	TTAA	2 cut(s)	81, 240
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	250, 506
Tsp45I	GTSAC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.