Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018287

Physical Location & Seq

Genomic Coordinates Reverse (-)

67724594 .. 67733123

Gene Structure 8530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3792 bp

ATGTCACGTCGTCGAAGCAACGGCGCATCCCCATTGGTTAACCCACAGCGCCAAATCACTTCCTTCTTCGCCAAAGCCACTTCCTCTCCATCTCCAATCCCTAAATCTAAATCTAAACCCAGCCCGGGTTCCAGCCCTAGCTCCACCACGCCTTCGCCTCTCCAATCCAAGCCTAAGCCCGATCCCGATCCCAATCCGAAGAAATCGTTGTACGGCCAAGAGGTGGTCGGCAAGAGGATCAAGGTGTACTGGGCGAGTGATAGGGCCTGGTACGAAGGCTGTGTCAAGTTGTTCAATAAGGAGAGTGGTAAGCACTTACTTCAGTACGACGATGGCGACGAAGAGACTTTGGATTTGGCCACCGAGAAAATCGAGTGGATTCAAGAGACCGTCCAGACCTTTAAGCGCTTGCGCCGCGGTCCTTTGCCCACTCCCGAGGCGGAGGAGGAGGAGGAGGTCAAGGAAGACAGTGATGATGATGATTCCGGCGATGAGGATTGGGGAAAGAGTGTGGAAAAGGAACTAGTTGAGGAGGAAGACGAGGTTATGGAATTGGAGGAGGAGCAAGATGATGATGATGATGATGAGGGACTCCAGCCCAAGCCCAAAGGAAGGCGCGGCGGCTCCGGTGGTAAACGGAAGTTGAGCGGCGGAGGGAATTTGGGGTCTGCTAAGAAGACCAAGACTGGTGGACATGTAGCCACTAATGGCCTCAAGCCTAATTTGATTCAGCCTACTACTACTACTACTAATGCTGCTGAGAGCACAAAGGCGGTTAATGGTATCAATATTGGTGATGCCTCAGAAAGGTTTAGCAAGCGTGAAGCTGACAAGTTCCGTTTCCTTGGGGAAAAACGCAGGGATGCCAAAAAAAGACAACCTGGGGATGCAAATTATGATCCAAGAACTCTATATCTACCTCCTGATTTCTTAAAGAATTTATCAGGTGGCCAGAGACAATGGTGGGAGTTTAAGTCAAAGCACATGGACAAAGTTCTATTTTTCAAGATGGGCAAGTTCTATGAACTTTTTGAAATGGATGCACATATAGGAGCAAAAGAACTTGATCTTCAATATATGAAGGGTGAACAACCCCATTGTGGATTTCCAGAGAAGAACTTTTCAATGCATGCGGAGAAACTGGCTAGGAAGGGTTACCGAGTTCTTGTCATAGAGCAGACAGAAACACCTGAACAGATGGAGCTTCGTCGCAAAGAGGGTGGCTCTAAAGATAAGGTTGTGAAACGTGAAGTATGTGCAGTAGTTACAAAAGGAACACTAACTGAAGGAGAGATGCTGTCCGCAAACCCTGATGCTTCTTATCTAATGGCAGTGACTGAAACCTCTCAAAATTTAGCAAACCAAAATGGCGAGCGTATTTTTGGAGTTTGTGTGGTTGATGTTGCTACCAGTAGGGTTATTCTTGGACAGTTCGCAGATGATTTAGAGTGCAGTGCCTTGTCTTGTCTCTTGTCTGAATTGAGGCCCGTGGAACTAGTAAAACCAGCAGAACTACTTAGTCCTGAGACAGAAAAAGTACTGCTAAGACATACAAGAAGTCCACTAGTGAATGAGTTGGTTCCACTTCTGGAATTCTGGGATGCTGAGAGAACTGTTTGTGAAGTTAAAAGTATCTATAGCTGTGCTGATGATTCTCATATGGAAGAACATGGCTTGGGCTGCATGCCAGATGTATTGTCTGAGCTTGTGGGAGCCGGGGAGGATGGCATCTGTGCACTTTCAGCTCTTGGGGGTGTTCTTTTCTACTTAAAGCAGGCTTTTCTAGAAGAGACATTGCTTAGATTTGCAAAATTTGAGTTACTTCCAAGTTCTGGTTTTGGTGGTATCATATCAAAACCATACATGGTTCTCGATGCAGCTGCACTAGAGAACCTGGAGATTTTTGAAAACAGCAGAAATGGAGACTCTTCAGGGACAATGTATGCGCAATTGAATCACTGTGTGACTGCATTTGGGAAGAGATTGCTTAAGACATGGCTTGCAAGACCTCTGTATCATGTAGAGTTAATTAAGGAACGCCAGGATGCTGTCTCAAGTTTACAGGGAATCAACCTTCCTCACGCACTTGAATTTCGAAAAGCAATGGCTAGGCTTCCGGACATGGAGCGCTTGCTTGCACGGGTCTTCGCTAGCAGTAAAGCTACTGGAAGGAATGCAAACAAAGTGGTTTTATATGAGGATGCCGCCAAAAAACAGCTCCAGGAGTTTATTACAGCTCTACGCGGTTGTGAATTAATGGCGGCAACAAGTTGCTCTCTTGGTGTCAACTTGGGAAATGTTGAATCTCGACAACTTCATCATTTGCTGACACCTGGTAAAGGTCTTCCTAATGTCAACTCAGTTTTAAAGCACTTCAAGGATGGCTTTGATTGGGTAGAAGCCAATAGTTCAGGTCGTATAATACCTCATGAAGGAGTTGATACTGAATACGACGCTGCATGTGGAAAAGTAAAAGAGATCGAGTCTCATTTAACTAAGTACCTTAACGAACAGAGGGAATTACTCGGAGATAAATCGATCACTTATGTCACAATTGGAAAAGAAGCATACCTATTGGAAGTTCCAGAAAGTTTGCGTGAGAGTATACCTCAGGATTATGAATTACGTTCATCCAAAAAGGGTTTCTTTAGGTACTGGACACCAAATATTAAGAAGTCATTGACTGAGCTCTCACAAGCTGAATCTGATAGGGAGTCCTCACTTAAAAGCATTTTGCAGAGGTTAATTGGACAATTCTGCGAGCATCATATTAAGTGGAGACAGTTGGTCTCTGTGACTGCTGAACTGGATGTTTTAATCAGTCTAGCAATTGCAAGTGATTATTCCGAGGGACCCACCTGTCGGCCTGTTATCATGAGTTCATCAGATACAGATGAAGTACCCCTCTTGTCCGCAAATAGTTTGGGACATCCTGTTCTTAGAAGTGATTCTTTAGGAAAAGGTACATTTGTCCCCAATGACATTACTCTTGGAGGTTCTGGTCATGCAAGCTTTGTCCTTCTCACTGGCCCTAACATGGGTGGGAAGTCAACTCTGCTTCGCCAAGTTTGCTTGGCTGTGATTTTAGCCCAGTTAGGAGCAGATGTGCCTGCAGAGAGCTTTGAGCTATCTCCTGTTGATCGAATCTTTGTTCGGATGGGTGCTAAAGATCATATTATGGTAGGCCAAAGTACATTTCTGACGGAGCTGTCAGAAACTGCAACAATGCTGTCATCTGCTACTCGTAACTCATTGGTAGCACTGGATGAACTTGGACGTGGGACATCAACTTCAGATGGACAAGCCATTGCGGAATCAGTTCTTGAACATTTTGTCCACAAGGTTCACTGTCGAGGAATGTTTTCTACTCACTATCACAGGCTAGCTGTTGATTATCAGAATAATTCTCAGGTTTCACTCTGCCATATGGCATGCCATGTTGGAAATGGAGATGCTGGTGTAGAAGAAGTGACATTTCTTTACAGATTGACTCCCGGTGCTTGTCCTAAAAGCTATGGTGTCAACATTGCTCGGTTAGCTGGACTTCCTATTTCTGTGCTTCAAAAAGCTGCTGCTAAGTCCAGGGAATTCGAAGCTGCATATGGTAAACACTTGAAGCAATCTGAAGATAGCTTTCCCTTTCAAAGTCCAGTTAACAAGATGGTTGAGTGCATCCAAAAGGTTACCAACATCGTGGCAAAGTTGACTAGTCACGAGTCTACTGAGGGCATCAACATTGACTCCCTGACTGAAGTTTGGCATAAAGCAAGATTGCTTGAGCAACAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

1263

Amino Acids

139.66

Weight (kDa)

5.77

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	317 - 430	1.2e-33	MutS domain I
MutS_II	PF05188	440 - 523	1.8e-08	MutS domain II
MutS_III	PF05192	627 - 943	2.6e-34	MutS domain III
MutS_IV	PF05190	812 - 902	2.6e-16	MutS family domain IV
MutS_V	PF00488	1007 - 1197	2.5e-67	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10950
rosa_chinensis	RchiOBHm_Chr7g0241701
rosa_multiflora	Rmu_sc0002268.1_g000005 Rmu_sc0017195.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054410
rosa_rugosa	Rorug07G0346500
rosa_samantha	Rh2BG003900 Rh7AG501000 Rh7BG472200
rosa_wichuraiana	Rw7G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2859, 3208
Acc16I	TGCGCA	1 cut(s)	1947
AccB7I	CCANNNNNTGG	2 cut(s)	223, 1832
AccBSI	CCGCTC	1 cut(s)	648
AccI	GTMKAC	2 cut(s)	2605, 3719
AccII	CGCG	3 cut(s)	417, 618, 2244
AccIII	TCCGGA	1 cut(s)	2116
AclWI	GGATC	4 cut(s)	176, 182, 245, 893
AcoI	YGGCCR	3 cut(s)	214, 357, 949
AcsI	RAATTY	7 cut(s)	658, 937, 1351, 1592, 1811, 2090, 3587
AcuI	CTGAAG	6 cut(s)	305, 1305, 1914, 3276, 3645, 3771
AdeI	CACNNNGTG	1 cut(s)	1963
AfeI	AGCGCT	2 cut(s)	407, 2129
AflII	CTTAAG	1 cut(s)	1988
AflIII	ACRYGT	1 cut(s)	694
AhdI	GACNNNNNGTC	1 cut(s)	2786
AhlI	ACTAGT	4 cut(s)	523, 1495, 1564, 3707
AjiI	CACGTC	2 cut(s)	8, 3278
AjnI	CCWGG	7 cut(s)	266, 880, 1893, 2040, 2220, 2332, 3581
AjuI	GAANNNNNNNTTGG	4 cut(s)	2627, 2659, 3180, 3212
AloI	GAACNNNNNNTCC	4 cut(s)	2919, 2951, 3318, 3350
Alw21I	GWGCWC	3 cut(s)	767, 1738, 2691
Alw44I	GTGCAC	1 cut(s)	1734
AlwI	GGATC	4 cut(s)	176, 182, 245, 893
AlwNI	CAGNNNCTG	2 cut(s)	1337, 3218
Ama87I	CYCGRG	2 cut(s)	124, 434
Aor13HI	TCCGGA	1 cut(s)	2116
Aor51HI	AGCGCT	2 cut(s)	407, 2129
AoxI	GGCC	9 cut(s)	214, 264, 357, 709, 949, 1484, 2864, 3028, 3184
ApaLI	GTGCAC	1 cut(s)	1734
ApeKI	GCWGC	8 cut(s)	755, 1680, 1877, 1880, 2456, 3569, 3572, 3596
ApoI	RAATTY	7 cut(s)	658, 937, 1351, 1592, 1811, 2090, 3587
ArsI	GACNNNNNNTTYG	4 cut(s)	267, 299, 337, 369
AseI	ATTAAT	1 cut(s)	2255
Asp700I	GAANNNNTTC	3 cut(s)	2947, 3318, 3361
AspLEI	GCGC	7 cut(s)	26, 51, 408, 414, 618, 1948, 2130
AspS9I	GGNCC	5 cut(s)	264, 419, 1485, 2852, 3029
AsuC2I	CCSGG	4 cut(s)	125, 126, 1717, 3495
AsuHPI	GGTGA	2 cut(s)	806, 1097
AsuII	TTCGAA	2 cut(s)	2095, 3591
AsuNHI	GCTAGC	2 cut(s)	2150, 3382
AvaI	CYCGRG	2 cut(s)	124, 434
AvaII	GGWCC	2 cut(s)	419, 2852
AxyI	CCTNAGG	1 cut(s)	2610
BaeGI	GKGCMC	1 cut(s)	1738
BaeI	ACNNNNGTAYC	4 cut(s)	1997, 2030, 2955, 2988
BalI	TGGCCA	2 cut(s)	359, 951
BanII	GRGCYC	1 cut(s)	2691
BauI	CACGAG	1 cut(s)	3713
BbsI	GAAGAC	5 cut(s)	471, 543, 683, 2137, 2336
Bbv12I	GWGCWC	3 cut(s)	767, 1738, 2691
BbvI	GCAGC	8 cut(s)	742, 1667, 1867, 1889, 2443, 3556, 3559, 3583
BccI	CCATC	9 cut(s)	97, 326, 1003, 1192, 1718, 2375, 3151, 3290, 3655
BceAI	ACGGC	2 cut(s)	37, 229
BcgI	CGANNNNNNTGC	2 cut(s)	1862, 1896
BciT130I	CCWGG	7 cut(s)	268, 882, 1895, 2042, 2222, 2334, 3583
BcnI	CCSGG	4 cut(s)	125, 126, 1717, 3495
BcuI	ACTAGT	4 cut(s)	523, 1495, 1564, 3707
BfmI	CTRYAG	2 cut(s)	1636, 3111
BfoI	RGCGCY	3 cut(s)	52, 409, 2131
BfrI	CTTAAG	1 cut(s)	1988
BmcAI	AGTACT	1 cut(s)	1539
Bme18I	GGWCC	2 cut(s)	419, 2852
BmeRI	GACNNNNNGTC	1 cut(s)	2786
BmeT110I	CYCGRG	2 cut(s)	124, 434
BmgBI	CACGTC	2 cut(s)	8, 3278
BmgT120I	GGNCC	5 cut(s)	264, 419, 1485, 2852, 3029
BmiI	GGNNCC	6 cut(s)	130, 625, 1581, 1714, 2853, 2854
BmrI	ACTGGG	2 cut(s)	259, 3085
BmtI	GCTAGC	2 cut(s)	2154, 3386
BmuI	ACTGGG	2 cut(s)	259, 3085
BpiI	GAAGAC	5 cut(s)	471, 543, 683, 2137, 2336
BplI	GAGNNNNNCTC	4 cut(s)	1208, 1240, 2593, 2625
BpmI	CTGGAG	3 cut(s)	578, 1916, 2204
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu14I	TTCGAA	2 cut(s)	2095, 3591
BpuEI	CTTGAG	2 cut(s)	698, 2038
BpuMI	CCSGG	4 cut(s)	125, 126, 1717, 3495
Bsa29I	ATCGAT	1 cut(s)	2537
BsaBI	GATNNNNATC	2 cut(s)	186, 192
BsaI	GGTCTC	2 cut(s)	380, 2794
BsaJI	CCNNGG	9 cut(s)	124, 415, 435, 844, 881, 1488, 1716, 2847, 3582
BsaWI	WCCGGW	2 cut(s)	626, 2116
Bse21I	CCTNAGG	1 cut(s)	2610
Bse3DI	GCAATG	4 cut(s)	1793, 2109, 3306, 3525
Bse8I	GATNNNNATC	2 cut(s)	186, 192
BseAI	TCCGGA	1 cut(s)	2116
BseBI	CCWGG	7 cut(s)	268, 882, 1895, 2042, 2222, 2334, 3583
BseCI	ATCGAT	1 cut(s)	2537
BseDI	CCNNGG	9 cut(s)	124, 415, 435, 844, 881, 1488, 1716, 2847, 3582
BseJI	GATNNNNATC	2 cut(s)	186, 192
BseMI	GCAATG	4 cut(s)	1793, 2109, 3306, 3525
BseRI	GAGGAG	7 cut(s)	458, 461, 464, 467, 545, 572, 575
BseSI	GKGCMC	1 cut(s)	1738
BseXI	GCAGC	8 cut(s)	742, 1667, 1867, 1889, 2443, 3556, 3559, 3583
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	3 cut(s)	1278, 1471, 1866
Bsh1236I	CGCG	3 cut(s)	417, 618, 2244
BshFI	GGCC	9 cut(s)	216, 266, 359, 711, 951, 1486, 2866, 3030, 3186
BshVI	ATCGAT	1 cut(s)	2537
BsiHKAI	GWGCWC	3 cut(s)	767, 1738, 2691
BsiHKCI	CYCGRG	2 cut(s)	124, 434
BsiSI	CCGG	6 cut(s)	125, 486, 627, 1716, 2117, 3495
BslFI	GGGAC	6 cut(s)	603, 1948, 2865, 2940, 2957, 3295
BsmFI	GGGAC	6 cut(s)	603, 1948, 2865, 2940, 2957, 3295
BsmI	GAATGC	1 cut(s)	2179
BsnI	GGCC	9 cut(s)	216, 266, 359, 711, 951, 1486, 2866, 3030, 3186
Bso31I	GGTCTC	2 cut(s)	380, 2794
BsoBI	CYCGRG	2 cut(s)	124, 434
Bsp119I	TTCGAA	2 cut(s)	2095, 3591
Bsp1286I	GDGCHC	3 cut(s)	767, 1738, 2691
Bsp13I	TCCGGA	1 cut(s)	2116
Bsp143I	GATC	9 cut(s)	181, 187, 237, 898, 1066, 2478, 2538, 3139, 3169
BspANI	GGCC	9 cut(s)	216, 266, 359, 711, 951, 1486, 2866, 3030, 3186
BspDI	ATCGAT	1 cut(s)	2537
BspEI	TCCGGA	1 cut(s)	2116
BspFNI	CGCG	3 cut(s)	417, 618, 2244
BspHI	TCATGA	2 cut(s)	2428, 2874
BspLI	GGNNCC	6 cut(s)	130, 625, 1581, 1714, 2853, 2854
BspMAI	CTGCAG	1 cut(s)	3115
BspOI	GCTAGC	2 cut(s)	2154, 3386
BspPI	GGATC	4 cut(s)	176, 182, 245, 893
BspT104I	TTCGAA	2 cut(s)	2095, 3591
BspTI	CTTAAG	1 cut(s)	1988
BspTNI	GGTCTC	2 cut(s)	380, 2794
BsrBI	CCGCTC	1 cut(s)	648
BsrDI	GCAATG	4 cut(s)	1793, 2109, 3306, 3525
BssECI	CCNNGG	9 cut(s)	124, 415, 435, 844, 881, 1488, 1716, 2847, 3582
BssMI	GATC	9 cut(s)	181, 187, 237, 898, 1066, 2478, 2538, 3139, 3169
BssNAI	GTATAC	1 cut(s)	2606
BssSI	CACGAG	1 cut(s)	3713
BssT1I	CCWWGG	1 cut(s)	844
Bst1107I	GTATAC	1 cut(s)	2606
Bst2BI	CACGAG	1 cut(s)	3713
Bst2UI	CCWGG	7 cut(s)	268, 882, 1895, 2042, 2222, 2334, 3583
Bst4CI	ACNGT	7 cut(s)	391, 470, 1431, 1615, 1961, 2784, 3350
Bst6I	CTCTTC	4 cut(s)	336, 1782, 1933, 1973
BstAFI	CTTAAG	1 cut(s)	1988
BstBI	TTCGAA	2 cut(s)	2095, 3591
BstDSI	CCRYGG	2 cut(s)	415, 1488
BstEII	GGTNACC	2 cut(s)	1154, 3682
BstENI	CCTNNNNNAGG	3 cut(s)	805, 2337, 2430
BstFNI	CGCG	3 cut(s)	417, 618, 2244
BstH2I	RGCGCY	3 cut(s)	52, 409, 2131
BstHHI	GCGC	7 cut(s)	26, 51, 408, 414, 618, 1948, 2130
BstKTI	GATC	9 cut(s)	184, 190, 240, 901, 1069, 2481, 2541, 3142, 3172
BstMBI	GATC	9 cut(s)	181, 187, 237, 898, 1066, 2478, 2538, 3139, 3169
BstMWI	GCNNNNNNNGC	5 cut(s)	414, 1680, 1742, 3069, 3536
BstNI	CCWGG	7 cut(s)	268, 882, 1895, 2042, 2222, 2334, 3583
BstNSI	RCATGY	5 cut(s)	698, 1133, 1687, 2463, 3435
BstPI	GGTNACC	2 cut(s)	1154, 3682
BstSFI	CTRYAG	2 cut(s)	1636, 3111
BstSLI	GKGCMC	1 cut(s)	1738
BstUI	CGCG	3 cut(s)	417, 618, 2244
BstV1I	GCAGC	8 cut(s)	742, 1667, 1867, 1889, 2443, 3556, 3559, 3583
BstV2I	GAAGAC	5 cut(s)	471, 543, 683, 2137, 2336
BstXI	CCANNNNNNTGG	1 cut(s)	3694
BstZ17I	GTATAC	1 cut(s)	2606
Bsu15I	ATCGAT	1 cut(s)	2537
Bsu36I	CCTNAGG	1 cut(s)	2610
BsuRI	GGCC	9 cut(s)	216, 266, 359, 711, 951, 1486, 2866, 3030, 3186
BsuTUI	ATCGAT	1 cut(s)	2537
BtgI	CCRYGG	2 cut(s)	415, 1488
BtgZI	GCGATG	1 cut(s)	504
BtrI	CACGTC	2 cut(s)	8, 3278
BtsI	GCAGTG	2 cut(s)	1338, 1459
BtsIMutI	CAGTG	7 cut(s)	475, 1338, 1459, 1957, 3024, 3260, 3346
CaiI	CAGNNNCTG	2 cut(s)	1337, 3218
CciI	TCATGA	2 cut(s)	2428, 2874
CfoI	GCGC	7 cut(s)	26, 51, 408, 414, 618, 1948, 2130
Cfr13I	GGNCC	5 cut(s)	264, 419, 1485, 2852, 3029
Cfr42I	CCGCGG	1 cut(s)	418
Cfr9I	CCCGGG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	2537
CseI	GACGC	1 cut(s)	2462
CsiI	ACCWGGT	1 cut(s)	2332
CspCI	CAANNNNNGTGG	6 cut(s)	670, 705, 1201, 1236, 2166, 2201
DpnI	GATC	9 cut(s)	183, 189, 239, 900, 1068, 2480, 2540, 3141, 3171
DpnII	GATC	9 cut(s)	181, 187, 237, 898, 1066, 2478, 2538, 3139, 3169
DraI	TTTAAA	1 cut(s)	2367
DraIII	CACNNNGTG	1 cut(s)	1963
DrdI	GACNNNNNNGTC	2 cut(s)	2859, 3208
DriI	GACNNNNNGTC	1 cut(s)	2786
DseDI	GACNNNNNNGTC	2 cut(s)	2859, 3208
EaeI	YGGCCR	3 cut(s)	214, 357, 949
Eam1104I	CTCTTC	4 cut(s)	336, 1782, 1933, 1973
Eam1105I	GACNNNNNGTC	1 cut(s)	2786
EarI	CTCTTC	4 cut(s)	336, 1782, 1933, 1973
EciI	GGCGGA	2 cut(s)	455, 666
Ecl136II	GAGCTC	1 cut(s)	2689
Eco130I	CCWWGG	1 cut(s)	844
Eco24I	GRGCYC	1 cut(s)	2691
Eco31I	GGTCTC	2 cut(s)	380, 2794
Eco47I	GGWCC	2 cut(s)	419, 2852
Eco47III	AGCGCT	2 cut(s)	407, 2129
Eco53kI	GAGCTC	1 cut(s)	2689
Eco57I	CTGAAG	6 cut(s)	305, 1305, 1914, 3276, 3645, 3771
Eco81I	CCTNAGG	1 cut(s)	2610
Eco88I	CYCGRG	2 cut(s)	124, 434
Eco91I	GGTNACC	2 cut(s)	1154, 3682
EcoICRI	GAGCTC	1 cut(s)	2689
EcoNI	CCTNNNNNAGG	3 cut(s)	805, 2337, 2430
EcoO109I	RGGNCCY	2 cut(s)	264, 2852
EcoO65I	GGTNACC	2 cut(s)	1154, 3682
EcoRI	GAATTC	2 cut(s)	1592, 3587
EcoRII	CCWGG	7 cut(s)	266, 880, 1893, 2040, 2220, 2332, 3581
EcoT14I	CCWWGG	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	1131
EcoT38I	GRGCYC	1 cut(s)	2691
ErhI	CCWWGG	1 cut(s)	844
FalI	AAGNNNNNCTT	6 cut(s)	2369, 2401, 2630, 2662, 2935, 2967
FaqI	GGGAC	6 cut(s)	603, 1948, 2865, 2940, 2957, 3295
FauNDI	CATATG	3 cut(s)	1659, 3426, 3601
FblI	GTMKAC	2 cut(s)	2605, 3719
FriOI	GRGCYC	1 cut(s)	2691
FspI	TGCGCA	1 cut(s)	1947
GlaI	GCGC	7 cut(s)	25, 50, 407, 413, 617, 1947, 2129
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	3 cut(s)	578, 1916, 2204
HaeII	RGCGCY	3 cut(s)	52, 409, 2131
HaeIII	GGCC	9 cut(s)	216, 266, 359, 711, 951, 1486, 2866, 3030, 3186
HapII	CCGG	6 cut(s)	125, 486, 627, 1716, 2117, 3495
HgaI	GACGC	1 cut(s)	2462
HhaI	GCGC	7 cut(s)	26, 51, 408, 414, 618, 1948, 2130
Hin6I	GCGC	7 cut(s)	24, 49, 406, 412, 616, 1946, 2128
HinP1I	GCGC	7 cut(s)	24, 49, 406, 412, 616, 1946, 2128
HincII	GTYRAC	7 cut(s)	40, 2287, 2356, 3051, 3523, 3655, 3705
HindII	GTYRAC	7 cut(s)	40, 2287, 2356, 3051, 3523, 3655, 3705
HindIII	AAGCTT	1 cut(s)	3010
HpaI	GTTAAC	2 cut(s)	40, 3655
HpaII	CCGG	6 cut(s)	125, 486, 627, 1716, 2117, 3495
HphI	GGTGA	2 cut(s)	806, 1097
Hpy99I	CGWCG	6 cut(s)	12, 15, 332, 341, 1212, 2456
HpyCH4III	ACNGT	7 cut(s)	391, 470, 1431, 1615, 1961, 2784, 3350
HpyCH4IV	ACGT	4 cut(s)	7, 1246, 2626, 3277
HpyF10VI	GCNNNNNNNGC	5 cut(s)	414, 1680, 1742, 3069, 3536
HpySE526I	ACGT	4 cut(s)	7, 1246, 2626, 3277
HspAI	GCGC	7 cut(s)	24, 49, 406, 412, 616, 1946, 2128
KflI	GGGWCCC	1 cut(s)	2852
Kpn2I	TCCGGA	1 cut(s)	2116
KspAI	GTTAAC	2 cut(s)	40, 3655
KspI	CCGCGG	1 cut(s)	418
Kzo9I	GATC	9 cut(s)	181, 187, 237, 898, 1066, 2478, 2538, 3139, 3169
Lsp1109I	GCAGC	8 cut(s)	742, 1667, 1867, 1889, 2443, 3556, 3559, 3583
MabI	ACCWGGT	1 cut(s)	2332
MaeII	ACGT	4 cut(s)	7, 1246, 2626, 3277
MalI	GATC	9 cut(s)	183, 189, 239, 900, 1068, 2480, 2540, 3141, 3171
MbiI	CCGCTC	1 cut(s)	648
MboI	GATC	9 cut(s)	181, 187, 237, 898, 1066, 2478, 2538, 3139, 3169
MfeI	CAATTG	3 cut(s)	1949, 2553, 2829
MhlI	GDGCHC	3 cut(s)	767, 1738, 2691
MlsI	TGGCCA	2 cut(s)	359, 951
MluNI	TGGCCA	2 cut(s)	359, 951
MlyI	GAGTC	7 cut(s)	585, 1919, 2492, 2723, 3484, 3725, 3734
MmeI	TCCRAC	1 cut(s)	3421
Mox20I	TGGCCA	2 cut(s)	359, 951
Mph1103I	ATGCAT	1 cut(s)	1131
MroI	TCCGGA	1 cut(s)	2116
MroXI	GAANNNNTTC	3 cut(s)	2947, 3318, 3361
MscI	TGGCCA	2 cut(s)	359, 951
Msp20I	TGGCCA	2 cut(s)	359, 951
MspA1I	CMGCKG	2 cut(s)	417, 1880
MspCI	CTTAAG	1 cut(s)	1988
MspI	CCGG	6 cut(s)	125, 486, 627, 1716, 2117, 3495
MunI	CAATTG	3 cut(s)	1949, 2553, 2829
Mva1269I	GAATGC	1 cut(s)	2179
MvaI	CCWGG	7 cut(s)	268, 882, 1895, 2042, 2222, 2334, 3583
MvnI	CGCG	3 cut(s)	417, 618, 2244
MwoI	GCNNNNNNNGC	5 cut(s)	414, 1680, 1742, 3069, 3536
NciI	CCSGG	4 cut(s)	125, 126, 1717, 3495
NdeI	CATATG	3 cut(s)	1659, 3426, 3601
NdeII	GATC	9 cut(s)	181, 187, 237, 898, 1066, 2478, 2538, 3139, 3169
NheI	GCTAGC	2 cut(s)	2150, 3382
NlaIV	GGNNCC	6 cut(s)	130, 625, 1581, 1714, 2853, 2854
NmuCI	GTSAC	7 cut(s)	3, 1333, 1963, 2548, 2794, 3469, 3710
NsbI	TGCGCA	1 cut(s)	1947
NsiI	ATGCAT	1 cut(s)	1131
NspI	RCATGY	5 cut(s)	698, 1133, 1687, 2463, 3435
NspV	TTCGAA	2 cut(s)	2095, 3591
PacI	TTAATTAA	1 cut(s)	2031
PaeI	GCATGC	3 cut(s)	1133, 1687, 3435
PagI	TCATGA	2 cut(s)	2428, 2874
PciI	ACATGT	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 336
PctI	GAATGC	1 cut(s)	2179
PdmI	GAANNNNTTC	3 cut(s)	2947, 3318, 3361
PflMI	CCANNNNNTGG	2 cut(s)	223, 1832
PfoI	TCCNGGA	1 cut(s)	2220
PleI	GAGTC	7 cut(s)	585, 1919, 2491, 2722, 3484, 3724, 3734
PpsI	GAGTC	7 cut(s)	585, 1919, 2491, 2722, 3484, 3724, 3734
PpuMI	RGGWCCY	1 cut(s)	2852
PscI	ACATGT	1 cut(s)	694
PshBI	ATTAAT	1 cut(s)	2255
Psp124BI	GAGCTC	1 cut(s)	2691
Psp5II	RGGWCCY	1 cut(s)	2852
Psp6I	CCWGG	7 cut(s)	266, 880, 1893, 2040, 2220, 2332, 3581
PspEI	GGTNACC	2 cut(s)	1154, 3682
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	7 cut(s)	266, 880, 1893, 2040, 2220, 2332, 3581
PspN4I	GGNNCC	6 cut(s)	130, 625, 1581, 1714, 2853, 2854
PspPI	GGNCC	5 cut(s)	264, 419, 1485, 2852, 3029
PspPPI	RGGWCCY	1 cut(s)	2852
PstI	CTGCAG	1 cut(s)	3115
PstNI	CAGNNNCTG	2 cut(s)	1337, 3218
PvuII	CAGCTG	1 cut(s)	1880
SacI	GAGCTC	1 cut(s)	2691
SacII	CCGCGG	1 cut(s)	418
Sau3AI	GATC	9 cut(s)	181, 187, 237, 898, 1066, 2478, 2538, 3139, 3169
Sau96I	GGNCC	5 cut(s)	264, 419, 1485, 2852, 3029
ScaI	AGTACT	1 cut(s)	1539
SchI	GAGTC	7 cut(s)	585, 1919, 2492, 2723, 3484, 3725, 3734
SduI	GDGCHC	3 cut(s)	767, 1738, 2691
SexAI	ACCWGGT	1 cut(s)	2332
SfcI	CTRYAG	2 cut(s)	1636, 3111
Sfr303I	CCGCGG	1 cut(s)	418
SfuI	TTCGAA	2 cut(s)	2095, 3591
SgrBI	CCGCGG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	419, 2852
SmaI	CCCGGG	1 cut(s)	126
SmlI	CTYRAG	4 cut(s)	713, 1988, 2053, 3776
SmoI	CTYRAG	4 cut(s)	713, 1988, 2053, 3776
SpeI	ACTAGT	4 cut(s)	523, 1495, 1564, 3707
SphI	GCATGC	3 cut(s)	1133, 1687, 3435
SspI	AATATT	2 cut(s)	790, 2668
SstI	GAGCTC	1 cut(s)	2691
StyI	CCWWGG	1 cut(s)	844
TaaI	ACNGT	7 cut(s)	391, 470, 1431, 1615, 1961, 2784, 3350
TaiI	ACGT	4 cut(s)	10, 1249, 2629, 3280
TatI	WGTACW	3 cut(s)	246, 1537, 3191
TauI	GCSGC	6 cut(s)	417, 621, 624, 651, 2207, 2264
TscAI	CASTG	7 cut(s)	475, 1338, 1459, 1964, 3031, 3267, 3353
TseFI	GTSAC	7 cut(s)	3, 1333, 1963, 2548, 2794, 3469, 3710
TseI	GCWGC	8 cut(s)	755, 1680, 1877, 1880, 2456, 3569, 3572, 3596
Tsp45I	GTSAC	7 cut(s)	3, 1333, 1963, 2548, 2794, 3469, 3710
TspDTI	ATGAA	9 cut(s)	1038, 1094, 2306, 2445, 2619, 2634, 2871, 2910, 3282
TspGWI	ACGGA	3 cut(s)	652, 827, 3218
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	7 cut(s)	475, 1338, 1459, 1964, 3031, 3267, 3353
Van91I	CCANNNNNTGG	2 cut(s)	223, 1832
Vha464I	CTTAAG	1 cut(s)	1988
VneI	GTGCAC	1 cut(s)	1734
VpaK11BI	GGWCC	2 cut(s)	419, 2852
VspI	ATTAAT	1 cut(s)	2255
XagI	CCTNNNNNAGG	3 cut(s)	805, 2337, 2430
XapI	RAATTY	7 cut(s)	658, 937, 1351, 1592, 1811, 2090, 3587
XbaI	TCTAGA	1 cut(s)	1783
XceI	RCATGY	5 cut(s)	698, 1133, 1687, 2463, 3435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3443
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	2605, 3719
XmnI	GAANNNNTTC	3 cut(s)	2947, 3318, 3361
ZrmI	AGTACT	1 cut(s)	1539
Zsp2I	ATGCAT	1 cut(s)	1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.