Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018287

Physical Location & Seq

Genomic Coordinates Reverse (-)

55669588 .. 55677363

Gene Structure 7776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG472200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3825 bp

ATGTCACGTCGTCGAAGCAACGGCACATCCCCATTGATTAACCCACAGCGCCAAATCACTTCCTTCTTCGCCAAAGCCACTTCCTCTCCATCTCCAATCCCTAAATCTAAATCTAAACCTAAACCCAGCCCGGGTTCCAGCCCTAGCTCCACCACGCCTTCGCCTCTCCAATCGAAGCCTAAGCCCAATCCCAATCCCAATCCCAATCCCAATCCGAAGAAATTGTTGTACGGCCAAGAGGTGGTCGGCAAGAGGATCAAGGTGTACTGGGCGAGTGATAGGGCCTGGTACGAAGGCTGTGTCAAGTTGTTCAATAAGGAGAGTGGCAAGCACTTACTTCAGTACGACGATGGCGACGAAGAGACTTTGGATTTGGCCACCGAGAAAATCGAGTGGATTCAAGAGACTGTCCGGACCTTGAAGCGCTTGCGTCGAGGTCCTTTGCCCACTCCCGAGGCGGAGGACAAGGAAGACAGTAATGATGATGATGATGATCCCGGCGATGAGGATTGGGGAAAGAGTGTGGAAAAGGAACTAGTTGAGGAGGAAGACGAGGTTATGGAATTGGAGGATGAGGAAGATGATGATGATGATGATGATGAGGGACTCCAGCCCAAGTCCAAAGGAAGGCGCGGCGGCTCCGGTGGTAAACGGAAGTTGAGCGGTGGAGGGAATTTGGGGTCTGCTAAGAAGACCAAGACTGGTGGACATGTAGCCACTAATGGCCTCAAGCCTAATTTGATTCAGCCTACTACTACTACTACTACTACTACTACTACTACTAATGCTGCTGACAGCACAAAGGCGGTTAATGGTATCAATATTGGTGATGCCTCAGAAAGGTTTAGCAAGCGTGAAGCTGACAAGTTCCATTTCCTCGGGGAAAAACGGAAGGATGCCAAAAAAAGACAACCTGGGGATGCAAATTATGATCCAAGAACTCTATATCTACCTCCTGATTTCTTAAAAAGTTTATCAGGTTGCCAGAGACAATGGTGGGAGTTTAAGTCAAAGCACATGGACAAAGTTCTATTTTTCAAGTTGGGCAAGTTCTATGAACTTTTTGAAATGGATGCACATATAGGAGCAAAAGAACTTGATCTTCAATATATGAAGGGTGAACAACCCCATTGTGGATTTCCAGAGAAGAACTTTTCAATGAATGTGGAGAAACTGGCTAGGAAGGGTTACCGAGTTCTTGTCATAGAGCAGACAGAAACACCTGAACAGATGGAGCTTCGTCGCAAAGAGGGTGGCTCTAAAGATAAGGTTGTGAAACGTGAAGTATGTGCAGTAGTTACAAAAGGAACACTAACTGAGGGAGAGATGCTGTCCGCAAACCCTGATGCTTCTTATCTAATGGCAGTGACTGAAACCTCTCAAAATTTAGCAAACCAAAATGGCGAGCGTATTTTTGGAGTTTGTGTGGTTGATGTTGCTACCAGTAGGGTTATTCTTGGACAGTTCGCAGATGATTTAGAGTGCAGTGCCTTGTCTTGTCTCTTGTCTGAATTGAGGCCCGTGGAACTAGTAAAACCAGCAGAACTACTTAGTCCTGAGACAGAAAAAGTACTGCTAAGACATACAAGAAGTCCACTAGTGAATGAGTTGGTTCCACTTCTGGAATTCTGGGATGCTGAGAGAACTGTTTGTGAAGTTAAAAGTATCTATAGCCGTGCTGATGATTCTCATATGGAAGAAGATGGCTTGGGCTGCCTGCCAGATGTATTGTCTGAGCTTGTGGGAGCCGGGGAGAATGGCATCTGTGCACTTTCAGCTCTTGGGGGTGTTCTTTTCTACTTAAAGCAGGCTTTTCTAGAAGAGACATTGCTTAGATTTGCAAAATTTGAGTTACTTCCAAGTTCTGGTTTTGGTGGTATCATATCAAAACCATACATGGTTCTCGATGCAGCTGCTCTAGAGAACCTGGAGATTTTTGAAAACAGCAGAAATGGAGACTCTTCAGGGACAATGTATGCGCAATTGAATCACTGTGTGACTGCATTTGGGAAGAGATTGCTTAAGACATGGCTTGCGAGACCTCTGTATCATGTAGAGTCAATTAAGGAACGCCAGGATGCTGTCTCAAGTTTACGGGGAATCAACCTTCCTCACGCACTTGAATTTCAAAAAGCAATGGCTAGGCTTCCGGACTTGGAGCGCTTGCTTGCACGGGTCTTCGCTAGCAGTAAAGCTAGTGGAAGGAATGCAAACAAAGTGGTTTTATATGAGGATGCCGCCAAAAAACAGCTCCAGGAGTTTATTACAGCTCTACATGGTTGTGAATTAATGGCGGCAACAAGTTGCTCTCTTGGTGTCAACTTGGGAAATGTTGAATCTCGACAACTTCATCATTTGCTGACACCTGGTAAAGGTCTTCCTAATGTCAATTCAGTTTTAAAGCACTTCAAGGATGGCTTTGATTGGGTAGAAGCCAATAGTTCAGGTCGTATAATACCTCAGGAAGGAGTTGATACTGAATACGATGCTGCATGTGGAAAAGTAAAAGAGATCGAGTCTCATTTAACTAAGTACCTTGAAGAACAGAGGGAATTACTCGGAGATAAATCGATCACTTATGTCACAATTGGAAAAGACGCATACCTATTGGAAGTTCCAGAAAGTTTGCGTGAGAGTATACCTCAGGATTATGAATTACGTTCATCCAAAAAGGGTTTCTTTAGGTACTGGACACCAAATATTAAGAAGTCATTGACTGAGCTCTCACAAGCTGAATCTGATAGGGAGTCCTCACTTAAAAGCATTTTGCAGAGGTTAATTGGACAATTCTGCGAGCATCATATTAAGTGGAGACAGTTGGTCTCTGTGACTGCTGAACTGGATGTTTTAATCAGTCTAGCAATTGCAAGTGATTATTATGAGGGACCCACCTGTCGGCCTGTTATCATGAGTTCATCAGATACAGATGAAGTACCCCTCTTGTCCGCAAATAGTTTGGGACATCCTGTTCTTAGAAGTGATTCTTTAGGAAAAGGTACATTTGTCCCCAATGACATTACTCTTGGAGGTTCTGGTCATGCAAGCTTTGTCCTTCTCACTGGCCCTAACATGGGTGGGAAGTCAACTCTGCTTCGCCAAGTTTGCTTGGCTGTGATTTTAGCCCAGTTAGGAGCAGATGTGCCTGCAGAGAGCTTTGAGCTGTCTCCTGTTGATCGAATCTTTGTTCGGATGGGTGCTAAAGATCATATCATGGTAGGCCAAAGTACATTTCTGACGGAGCTGTCAGAAACTGCAACAATGCTGTCATCTGCTACTCGTAACTCATTGGTAGCACTGGATGAACTTGGACGTGGGACATCAACTTCAGATGGACAAGCCATTGCGGAATCAGTTCTTGAACATTTTGTCCGCAAGGTTCACTGTCGAGGAATGTTTTCTACTCACTATCACAGGCTAGCTGTTGATTATCAGAATAATTCTCAGGTTTCACTCTGCCATATGGCATGCCATGTTGGAAATGGAGATGCTGGTGTAGAAGAAGTGACATTTCTTTACAGATTGACTCCCGGTGCTTGTCCTAAAAGCTATGGTGTCAACATTGCCCGGTTAGCTGGACTTCCTATTTCTGTGCTTCAAAAAGCTGCTGCTAAGTCCAGGGAATTCGAAGCTGCATATGGTAAACACTTGAAGCAATCTGAAGATAGCTTTCCCTTTCAAAGTCCAGTTAACAAGATGGTTGAGTGCATCCAAAAGTTTACCAACATCGTGGCAAAGTTGACTAGTCACGAGTCTACTGAGGGCATCGACATTGACTCCCTGACTGAAGTTTGGCATAAAGCAAGATTGCTTGAGCAACAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

1274

Amino Acids

140.82

Weight (kDa)

5.79

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	328 - 441	1.9e-32	MutS domain I
MutS_II	PF05188	451 - 602	1.2e-08	MutS domain II
MutS_III	PF05192	638 - 954	2.5e-34	MutS domain III
MutS_IV	PF05190	823 - 913	9.7e-17	MutS family domain IV
MutS_V	PF00488	1018 - 1208	2.7e-67	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10950
rosa_chinensis	RchiOBHm_Chr7g0241701
rosa_multiflora	Rmu_sc0002268.1_g000005 Rmu_sc0017195.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054410
rosa_rugosa	Rorug07G0346500
rosa_samantha	Rh2BG003900 Rh7AG501000 Rh7BG472200
rosa_wichuraiana	Rw7G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2892, 3241
Acc16I	TGCGCA	1 cut(s)	1980
AccB7I	CCANNNNNTGG	2 cut(s)	241, 1865
AccBSI	CCGCTC	1 cut(s)	663
AccI	GTMKAC	2 cut(s)	2638, 3752
AccII	CGCG	1 cut(s)	633
AccIII	TCCGGA	2 cut(s)	411, 2149
AclWI	GGATC	3 cut(s)	263, 488, 926
AcoI	YGGCCR	2 cut(s)	232, 375
AcsI	RAATTY	6 cut(s)	673, 1384, 1625, 1844, 2123, 3620
AcuI	CTGAAG	5 cut(s)	323, 1947, 3309, 3678, 3804
AdeI	CACNNNGTG	1 cut(s)	1996
AfeI	AGCGCT	2 cut(s)	425, 2162
AflII	CTTAAG	1 cut(s)	2021
AflIII	ACRYGT	1 cut(s)	709
AhdI	GACNNNNNGTC	1 cut(s)	2819
AhlI	ACTAGT	4 cut(s)	535, 1528, 1597, 3740
AjiI	CACGTC	2 cut(s)	8, 3311
AjnI	CCWGG	7 cut(s)	284, 913, 1926, 2073, 2253, 2365, 3614
AjuI	GAANNNNNNNTTGG	4 cut(s)	2660, 2692, 3213, 3245
AloI	GAACNNNNNNTCC	4 cut(s)	2952, 2984, 3351, 3383
Alw21I	GWGCWC	2 cut(s)	1771, 2724
Alw44I	GTGCAC	1 cut(s)	1767
AlwI	GGATC	3 cut(s)	263, 488, 926
AlwNI	CAGNNNCTG	2 cut(s)	1370, 3251
Ama87I	CYCGRG	3 cut(s)	130, 452, 878
Aor13HI	TCCGGA	2 cut(s)	411, 2149
Aor51HI	AGCGCT	2 cut(s)	425, 2162
AoxI	GGCC	8 cut(s)	232, 282, 375, 724, 1517, 2897, 3061, 3217
ApaLI	GTGCAC	1 cut(s)	1767
ApeKI	GCWGC	8 cut(s)	788, 1713, 1910, 1913, 2489, 3602, 3605, 3629
ApoI	RAATTY	6 cut(s)	673, 1384, 1625, 1844, 2123, 3620
ArsI	GACNNNNNNTTYG	4 cut(s)	285, 317, 355, 387
AseI	ATTAAT	1 cut(s)	2288
Asp700I	GAANNNNTTC	3 cut(s)	2980, 3351, 3394
AspLEI	GCGC	5 cut(s)	51, 426, 633, 1981, 2163
AspS9I	GGNCC	6 cut(s)	282, 414, 437, 1518, 2885, 3062
AsuC2I	CCSGG	6 cut(s)	131, 132, 498, 1750, 3528, 3565
AsuHPI	GGTGA	2 cut(s)	839, 1130
AsuII	TTCGAA	1 cut(s)	3624
AsuNHI	GCTAGC	2 cut(s)	2183, 3415
AvaI	CYCGRG	3 cut(s)	130, 452, 878
AvaII	GGWCC	3 cut(s)	414, 437, 2885
AxyI	CCTNAGG	2 cut(s)	2460, 2643
BaeGI	GKGCMC	1 cut(s)	1771
BaeI	ACNNNNGTAYC	4 cut(s)	2030, 2063, 2988, 3021
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	2724
BauI	CACGAG	1 cut(s)	3746
BbsI	GAAGAC	5 cut(s)	477, 555, 698, 2170, 2369
Bbv12I	GWGCWC	2 cut(s)	1771, 2724
BbvI	GCAGC	8 cut(s)	775, 1700, 1900, 1922, 2476, 3589, 3592, 3616
BccI	CCATC	8 cut(s)	97, 344, 1225, 1697, 2408, 3184, 3323, 3688
BceAI	ACGGC	3 cut(s)	37, 247, 1659
BcgI	CGANNNNNNTGC	2 cut(s)	1895, 1929
BciT130I	CCWGG	7 cut(s)	286, 915, 1928, 2075, 2255, 2367, 3616
BcnI	CCSGG	6 cut(s)	131, 132, 498, 1750, 3528, 3565
BcuI	ACTAGT	4 cut(s)	535, 1528, 1597, 3740
BfmI	CTRYAG	2 cut(s)	1669, 3144
BfoI	RGCGCY	3 cut(s)	52, 427, 2164
BfrI	CTTAAG	1 cut(s)	2021
BmcAI	AGTACT	1 cut(s)	1572
Bme18I	GGWCC	3 cut(s)	414, 437, 2885
BmeRI	GACNNNNNGTC	1 cut(s)	2819
BmeT110I	CYCGRG	3 cut(s)	130, 452, 878
BmgBI	CACGTC	2 cut(s)	8, 3311
BmgT120I	GGNCC	6 cut(s)	282, 414, 437, 1518, 2885, 3062
BmiI	GGNNCC	6 cut(s)	136, 640, 1614, 1747, 2886, 2887
BmrI	ACTGGG	2 cut(s)	277, 3118
BmtI	GCTAGC	2 cut(s)	2187, 3419
BmuI	ACTGGG	2 cut(s)	277, 3118
BpiI	GAAGAC	5 cut(s)	477, 555, 698, 2170, 2369
BplI	GAGNNNNNCTC	4 cut(s)	1241, 1273, 2626, 2658
BpmI	CTGGAG	3 cut(s)	593, 1949, 2237
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	3624
BpuEI	CTTGAG	2 cut(s)	713, 2071
BpuMI	CCSGG	6 cut(s)	131, 132, 498, 1750, 3528, 3565
Bsa29I	ATCGAT	1 cut(s)	2570
BsaBI	GATNNNNATC	1 cut(s)	492
BsaI	GGTCTC	2 cut(s)	2032, 2827
BsaJI	CCNNGG	7 cut(s)	130, 453, 877, 914, 1521, 1749, 3615
BsaWI	WCCGGW	3 cut(s)	411, 641, 2149
Bse21I	CCTNAGG	2 cut(s)	2460, 2643
Bse3DI	GCAATG	4 cut(s)	1826, 2142, 3339, 3558
Bse8I	GATNNNNATC	1 cut(s)	492
BseAI	TCCGGA	2 cut(s)	411, 2149
BseBI	CCWGG	7 cut(s)	286, 915, 1928, 2075, 2255, 2367, 3616
BseCI	ATCGAT	1 cut(s)	2570
BseDI	CCNNGG	7 cut(s)	130, 453, 877, 914, 1521, 1749, 3615
BseJI	GATNNNNATC	1 cut(s)	492
BseMI	GCAATG	4 cut(s)	1826, 2142, 3339, 3558
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	1771
BseXI	GCAGC	8 cut(s)	775, 1700, 1900, 1922, 2476, 3589, 3592, 3616
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	2 cut(s)	1311, 1504
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	8 cut(s)	234, 284, 377, 726, 1519, 2899, 3063, 3219
BshVI	ATCGAT	1 cut(s)	2570
BsiHKAI	GWGCWC	2 cut(s)	1771, 2724
BsiHKCI	CYCGRG	3 cut(s)	130, 452, 878
BsiSI	CCGG	8 cut(s)	131, 412, 498, 642, 1749, 2150, 3528, 3565
BslFI	GGGAC	6 cut(s)	618, 1981, 2898, 2973, 2990, 3328
BsmFI	GGGAC	6 cut(s)	618, 1981, 2898, 2973, 2990, 3328
BsmI	GAATGC	1 cut(s)	2212
BsnI	GGCC	8 cut(s)	234, 284, 377, 726, 1519, 2899, 3063, 3219
Bso31I	GGTCTC	2 cut(s)	2032, 2827
BsoBI	CYCGRG	3 cut(s)	130, 452, 878
Bsp119I	TTCGAA	1 cut(s)	3624
Bsp1286I	GDGCHC	2 cut(s)	1771, 2724
Bsp13I	TCCGGA	2 cut(s)	411, 2149
Bsp143I	GATC	8 cut(s)	255, 493, 931, 1099, 2511, 2571, 3172, 3202
BspANI	GGCC	8 cut(s)	234, 284, 377, 726, 1519, 2899, 3063, 3219
BspDI	ATCGAT	1 cut(s)	2570
BspEI	TCCGGA	2 cut(s)	411, 2149
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	2907
BspLI	GGNNCC	6 cut(s)	136, 640, 1614, 1747, 2886, 2887
BspMAI	CTGCAG	1 cut(s)	3148
BspOI	GCTAGC	2 cut(s)	2187, 3419
BspPI	GGATC	3 cut(s)	263, 488, 926
BspT104I	TTCGAA	1 cut(s)	3624
BspTI	CTTAAG	1 cut(s)	2021
BspTNI	GGTCTC	2 cut(s)	2032, 2827
BsrBI	CCGCTC	1 cut(s)	663
BsrDI	GCAATG	4 cut(s)	1826, 2142, 3339, 3558
BssECI	CCNNGG	7 cut(s)	130, 453, 877, 914, 1521, 1749, 3615
BssMI	GATC	8 cut(s)	255, 493, 931, 1099, 2511, 2571, 3172, 3202
BssNAI	GTATAC	1 cut(s)	2639
BssSI	CACGAG	1 cut(s)	3746
Bst1107I	GTATAC	1 cut(s)	2639
Bst2BI	CACGAG	1 cut(s)	3746
Bst2UI	CCWGG	7 cut(s)	286, 915, 1928, 2075, 2255, 2367, 3616
Bst4CI	ACNGT	7 cut(s)	409, 476, 1464, 1648, 1994, 2817, 3383
Bst6I	CTCTTC	4 cut(s)	354, 1815, 1966, 2006
BstAFI	CTTAAG	1 cut(s)	2021
BstBI	TTCGAA	1 cut(s)	3624
BstDSI	CCRYGG	1 cut(s)	1521
BstEII	GGTNACC	1 cut(s)	1187
BstENI	CCTNNNNNAGG	3 cut(s)	838, 2370, 2463
BstFNI	CGCG	1 cut(s)	633
BstH2I	RGCGCY	3 cut(s)	52, 427, 2164
BstHHI	GCGC	5 cut(s)	51, 426, 633, 1981, 2163
BstKTI	GATC	8 cut(s)	258, 496, 934, 1102, 2514, 2574, 3175, 3205
BstMBI	GATC	8 cut(s)	255, 493, 931, 1099, 2511, 2571, 3172, 3202
BstMWI	GCNNNNNNNGC	4 cut(s)	1713, 1775, 3102, 3569
BstNI	CCWGG	7 cut(s)	286, 915, 1928, 2075, 2255, 2367, 3616
BstNSI	RCATGY	3 cut(s)	713, 2496, 3468
BstPI	GGTNACC	1 cut(s)	1187
BstSFI	CTRYAG	2 cut(s)	1669, 3144
BstSLI	GKGCMC	1 cut(s)	1771
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	8 cut(s)	775, 1700, 1900, 1922, 2476, 3589, 3592, 3616
BstV2I	GAAGAC	5 cut(s)	477, 555, 698, 2170, 2369
BstXI	CCANNNNNNTGG	1 cut(s)	3727
BstZ17I	GTATAC	1 cut(s)	2639
Bsu15I	ATCGAT	1 cut(s)	2570
Bsu36I	CCTNAGG	2 cut(s)	2460, 2643
BsuRI	GGCC	8 cut(s)	234, 284, 377, 726, 1519, 2899, 3063, 3219
BsuTUI	ATCGAT	1 cut(s)	2570
BtgI	CCRYGG	1 cut(s)	1521
BtgZI	GCGATG	1 cut(s)	516
BtrI	CACGTC	2 cut(s)	8, 3311
BtsI	GCAGTG	2 cut(s)	1371, 1492
BtsIMutI	CAGTG	6 cut(s)	1371, 1492, 1990, 3057, 3293, 3379
CaiI	CAGNNNCTG	2 cut(s)	1370, 3251
CciI	TCATGA	1 cut(s)	2907
CfoI	GCGC	5 cut(s)	51, 426, 633, 1981, 2163
Cfr13I	GGNCC	6 cut(s)	282, 414, 437, 1518, 2885, 3062
Cfr9I	CCCGGG	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	2570
CseI	GACGC	2 cut(s)	419, 2606
CsiI	ACCWGGT	1 cut(s)	2365
CspCI	CAANNNNNGTGG	8 cut(s)	685, 720, 1146, 1181, 1234, 1269, 2199, 2234
DpnI	GATC	8 cut(s)	257, 495, 933, 1101, 2513, 2573, 3174, 3204
DpnII	GATC	8 cut(s)	255, 493, 931, 1099, 2511, 2571, 3172, 3202
DraI	TTTAAA	1 cut(s)	2400
DraIII	CACNNNGTG	1 cut(s)	1996
DrdI	GACNNNNNNGTC	2 cut(s)	2892, 3241
DriI	GACNNNNNGTC	1 cut(s)	2819
DseDI	GACNNNNNNGTC	2 cut(s)	2892, 3241
EaeI	YGGCCR	2 cut(s)	232, 375
Eam1104I	CTCTTC	4 cut(s)	354, 1815, 1966, 2006
Eam1105I	GACNNNNNGTC	1 cut(s)	2819
EarI	CTCTTC	4 cut(s)	354, 1815, 1966, 2006
EciI	GGCGGA	1 cut(s)	473
Ecl136II	GAGCTC	1 cut(s)	2722
Eco24I	GRGCYC	1 cut(s)	2724
Eco31I	GGTCTC	2 cut(s)	2032, 2827
Eco47I	GGWCC	3 cut(s)	414, 437, 2885
Eco47III	AGCGCT	2 cut(s)	425, 2162
Eco53kI	GAGCTC	1 cut(s)	2722
Eco57I	CTGAAG	5 cut(s)	323, 1947, 3309, 3678, 3804
Eco81I	CCTNAGG	2 cut(s)	2460, 2643
Eco88I	CYCGRG	3 cut(s)	130, 452, 878
Eco91I	GGTNACC	1 cut(s)	1187
EcoICRI	GAGCTC	1 cut(s)	2722
EcoNI	CCTNNNNNAGG	3 cut(s)	838, 2370, 2463
EcoO109I	RGGNCCY	3 cut(s)	282, 437, 2885
EcoO65I	GGTNACC	1 cut(s)	1187
EcoRI	GAATTC	2 cut(s)	1625, 3620
EcoRII	CCWGG	7 cut(s)	284, 913, 1926, 2073, 2253, 2365, 3614
EcoT38I	GRGCYC	1 cut(s)	2724
FalI	AAGNNNNNCTT	6 cut(s)	2402, 2434, 2663, 2695, 2968, 3000
FaqI	GGGAC	6 cut(s)	618, 1981, 2898, 2973, 2990, 3328
FauNDI	CATATG	3 cut(s)	1692, 3459, 3634
FblI	GTMKAC	2 cut(s)	2638, 3752
FriOI	GRGCYC	1 cut(s)	2724
FspI	TGCGCA	1 cut(s)	1980
GlaI	GCGC	5 cut(s)	50, 425, 632, 1980, 2162
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	3 cut(s)	593, 1949, 2237
HaeII	RGCGCY	3 cut(s)	52, 427, 2164
HaeIII	GGCC	8 cut(s)	234, 284, 377, 726, 1519, 2899, 3063, 3219
HapII	CCGG	8 cut(s)	131, 412, 498, 642, 1749, 2150, 3528, 3565
HgaI	GACGC	2 cut(s)	419, 2606
HhaI	GCGC	5 cut(s)	51, 426, 633, 1981, 2163
Hin6I	GCGC	5 cut(s)	49, 424, 631, 1979, 2161
HinP1I	GCGC	5 cut(s)	49, 424, 631, 1979, 2161
HincII	GTYRAC	5 cut(s)	2320, 3084, 3556, 3688, 3738
HindII	GTYRAC	5 cut(s)	2320, 3084, 3556, 3688, 3738
HindIII	AAGCTT	1 cut(s)	3043
HpaI	GTTAAC	1 cut(s)	3688
HpaII	CCGG	8 cut(s)	131, 412, 498, 642, 1749, 2150, 3528, 3565
HphI	GGTGA	2 cut(s)	839, 1130
Hpy99I	CGWCG	6 cut(s)	12, 15, 350, 359, 435, 1245
HpyCH4III	ACNGT	7 cut(s)	409, 476, 1464, 1648, 1994, 2817, 3383
HpyCH4IV	ACGT	4 cut(s)	7, 1279, 2659, 3310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1713, 1775, 3102, 3569
HpySE526I	ACGT	4 cut(s)	7, 1279, 2659, 3310
HspAI	GCGC	5 cut(s)	49, 424, 631, 1979, 2161
KflI	GGGWCCC	1 cut(s)	2885
Kpn2I	TCCGGA	2 cut(s)	411, 2149
KspAI	GTTAAC	1 cut(s)	3688
Kzo9I	GATC	8 cut(s)	255, 493, 931, 1099, 2511, 2571, 3172, 3202
LmnI	GCTCC	9 cut(s)	152, 644, 1085, 1234, 1745, 2158, 2256, 3131, 3238
Lsp1109I	GCAGC	8 cut(s)	775, 1700, 1900, 1922, 2476, 3589, 3592, 3616
MabI	ACCWGGT	1 cut(s)	2365
MaeII	ACGT	4 cut(s)	7, 1279, 2659, 3310
MalI	GATC	8 cut(s)	257, 495, 933, 1101, 2513, 2573, 3174, 3204
MbiI	CCGCTC	1 cut(s)	663
MboI	GATC	8 cut(s)	255, 493, 931, 1099, 2511, 2571, 3172, 3202
MfeI	CAATTG	3 cut(s)	1982, 2586, 2862
MhlI	GDGCHC	2 cut(s)	1771, 2724
MlsI	TGGCCA	1 cut(s)	377
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	8 cut(s)	600, 1952, 2066, 2525, 2756, 3517, 3758, 3767
MmeI	TCCRAC	1 cut(s)	3454
Mox20I	TGGCCA	1 cut(s)	377
MroI	TCCGGA	2 cut(s)	411, 2149
MroXI	GAANNNNTTC	3 cut(s)	2980, 3351, 3394
MscI	TGGCCA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	2280
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	1913
MspCI	CTTAAG	1 cut(s)	2021
MspI	CCGG	8 cut(s)	131, 412, 498, 642, 1749, 2150, 3528, 3565
MunI	CAATTG	3 cut(s)	1982, 2586, 2862
Mva1269I	GAATGC	1 cut(s)	2212
MvaI	CCWGG	7 cut(s)	286, 915, 1928, 2075, 2255, 2367, 3616
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	1713, 1775, 3102, 3569
NciI	CCSGG	6 cut(s)	131, 132, 498, 1750, 3528, 3565
NdeI	CATATG	3 cut(s)	1692, 3459, 3634
NdeII	GATC	8 cut(s)	255, 493, 931, 1099, 2511, 2571, 3172, 3202
NheI	GCTAGC	2 cut(s)	2183, 3415
NlaIV	GGNNCC	6 cut(s)	136, 640, 1614, 1747, 2886, 2887
NmuCI	GTSAC	7 cut(s)	3, 1366, 1996, 2581, 2827, 3502, 3743
NsbI	TGCGCA	1 cut(s)	1980
NspI	RCATGY	3 cut(s)	713, 2496, 3468
NspV	TTCGAA	1 cut(s)	3624
PaeI	GCATGC	1 cut(s)	3468
PagI	TCATGA	1 cut(s)	2907
PciI	ACATGT	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 354
PctI	GAATGC	1 cut(s)	2212
PdmI	GAANNNNTTC	3 cut(s)	2980, 3351, 3394
PflMI	CCANNNNNTGG	2 cut(s)	241, 1865
PfoI	TCCNGGA	1 cut(s)	2253
PleI	GAGTC	8 cut(s)	600, 1952, 2065, 2524, 2755, 3517, 3757, 3767
PpsI	GAGTC	8 cut(s)	600, 1952, 2065, 2524, 2755, 3517, 3757, 3767
PpuMI	RGGWCCY	2 cut(s)	437, 2885
PscI	ACATGT	1 cut(s)	709
PshBI	ATTAAT	1 cut(s)	2288
Psp124BI	GAGCTC	1 cut(s)	2724
Psp5II	RGGWCCY	2 cut(s)	437, 2885
Psp6I	CCWGG	7 cut(s)	284, 913, 1926, 2073, 2253, 2365, 3614
PspEI	GGTNACC	1 cut(s)	1187
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	7 cut(s)	284, 913, 1926, 2073, 2253, 2365, 3614
PspN4I	GGNNCC	6 cut(s)	136, 640, 1614, 1747, 2886, 2887
PspPI	GGNCC	6 cut(s)	282, 414, 437, 1518, 2885, 3062
PspPPI	RGGWCCY	2 cut(s)	437, 2885
PstI	CTGCAG	1 cut(s)	3148
PstNI	CAGNNNCTG	2 cut(s)	1370, 3251
PvuII	CAGCTG	1 cut(s)	1913
RseI	CAYNNNNRTG	1 cut(s)	2280
SacI	GAGCTC	1 cut(s)	2724
Sau3AI	GATC	8 cut(s)	255, 493, 931, 1099, 2511, 2571, 3172, 3202
Sau96I	GGNCC	6 cut(s)	282, 414, 437, 1518, 2885, 3062
ScaI	AGTACT	1 cut(s)	1572
SchI	GAGTC	8 cut(s)	600, 1952, 2066, 2525, 2756, 3517, 3758, 3767
SduI	GDGCHC	2 cut(s)	1771, 2724
SexAI	ACCWGGT	1 cut(s)	2365
SfcI	CTRYAG	2 cut(s)	1669, 3144
SfuI	TTCGAA	1 cut(s)	3624
SinI	GGWCC	3 cut(s)	414, 437, 2885
SmaI	CCCGGG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	2280
SmlI	CTYRAG	4 cut(s)	728, 2021, 2086, 3809
SmoI	CTYRAG	4 cut(s)	728, 2021, 2086, 3809
SpeI	ACTAGT	4 cut(s)	535, 1528, 1597, 3740
SphI	GCATGC	1 cut(s)	3468
SspI	AATATT	2 cut(s)	823, 2701
SstI	GAGCTC	1 cut(s)	2724
TaaI	ACNGT	7 cut(s)	409, 476, 1464, 1648, 1994, 2817, 3383
TaiI	ACGT	4 cut(s)	10, 1282, 2662, 3313
TatI	WGTACW	3 cut(s)	264, 1570, 3224
TauI	GCSGC	4 cut(s)	636, 639, 2240, 2297
TscAI	CASTG	6 cut(s)	1371, 1492, 1997, 3064, 3300, 3386
TseFI	GTSAC	7 cut(s)	3, 1366, 1996, 2581, 2827, 3502, 3743
TseI	GCWGC	8 cut(s)	788, 1713, 1910, 1913, 2489, 3602, 3605, 3629
Tsp45I	GTSAC	7 cut(s)	3, 1366, 1996, 2581, 2827, 3502, 3743
TspDTI	ATGAA	9 cut(s)	1071, 1127, 1175, 2339, 2652, 2667, 2904, 2943, 3315
TspGWI	ACGGA	3 cut(s)	667, 904, 3251
TspMI	CCCGGG	1 cut(s)	130
TspRI	CASTG	6 cut(s)	1371, 1492, 1997, 3064, 3300, 3386
Van91I	CCANNNNNTGG	2 cut(s)	241, 1865
Vha464I	CTTAAG	1 cut(s)	2021
VneI	GTGCAC	1 cut(s)	1767
VpaK11BI	GGWCC	3 cut(s)	414, 437, 2885
VspI	ATTAAT	1 cut(s)	2288
XagI	CCTNNNNNAGG	3 cut(s)	838, 2370, 2463
XapI	RAATTY	6 cut(s)	673, 1384, 1625, 1844, 2123, 3620
XbaI	TCTAGA	2 cut(s)	1816, 1918
XceI	RCATGY	3 cut(s)	713, 2496, 3468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3476
XmaI	CCCGGG	1 cut(s)	130
XmiI	GTMKAC	2 cut(s)	2638, 3752
XmnI	GAANNNNTTC	3 cut(s)	2980, 3351, 3394
ZrmI	AGTACT	1 cut(s)	1572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.