Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002268.1

Orthogroup ID

OG0018287

Physical Location & Seq

Genomic Coordinates Forward (+)

16936 .. 24855

Gene Structure 7920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002268.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3783 bp

atgtcacgtcgtcgaagcaacggcgcatccccattggttaacccacagcgccaaatcacttccttcttcgccaaagccacttcctctccatctccaatccctaaatctaaacctaaacccagcccgggttccagccctagctccaccacgccttcgcctctccaatccaagcctaagcccgatcccaatccgaagaaattgttgtacggccaagaggtggtcggcaagaggatcaaggtgtactgggcgagtgatagggcctggtacgaaggctgtgtcaagttgttcaataaggagagtggtaagcacttacttcagtacgacgatggcgacgaagagactttggatttggccaccgagaaaatcgagtggattcaagagaccgtccagacctttaagcgcttgcgccgcggtcctttgccgactcccgaggcggaggaggacaaggaagacagtgatgatgatgatgatgattccggcgatgaggattggggaaagggtgtggaaaaggaactagttgaggaggaagacgaggttatggaattggaggatgaggaagaagatgatgatgatgatgagggactccagcccaagcccaaagcaaggcgcggcggctccggtggtaaacggaagttgagcggcggagggaatttggggtctgctaagaagaccaagactggtggacatgtagccactaatggcctcaagcctaaagggattcagcctgctactactactactaatgctgctgacagcacaaaggcggttaatggtatcaatattggtgatgcctcagaaaggtttagcaagcgtgaagctgacaagttccgtttcctcggggaaaaacgcagggatgccaaaaaaagacaacttggggatgcaaattatgatccaagaactctatatctacctcctgatttcttaaagagtttatcaggtggccagagacaatggtgggagtttaagtcaaagcacatggacaaagttctatttttcaagatgggcaagttctatgaactttttgaaatggatgcacatataggagcaaaagaacttgatcttcaatatatgaagggtgaacaaccccattgtggatttccagagaagaaattttcaatgcatgtggagaaactggctaggaagggttaccgagttcttgtcatagagcagacagaaacacctgaacagatggagcttcgtcgcaaagagggtggctctaaagataaggttgtgaaacgtgaagtatgtgcagtagttacaaaaggaacactaactgagggagagatgctgtccgcaaaccctgatgcttcttatctaatggcagtgactgaaacctctcaaaatttagcaaaccaaaatggcgagcgtatttttggagtttgtgtggttgatgttgctaccagtagggttattcttggacagttcgcagatgatttagagtgcagtgccttgtcttgtctcttgtctgaattgaggcccgtggaactagtaaaaccagcagaactacttagtcctgagacggaaaaagtactgctacgacatacaagaagtccactagtgaatgagttggttccacttctggaattctgggatgctgagagaactgtttgtgaagttaaaagtatctatagccgtgctgatgattctcatatggaagaacatggcttgggctgcctgccagatgtattgtctgagcttatgggagccggggaggatggcatctgtgcactttcagctcttgggggtgttcttttctacttaaagcaggcttttctagaagatacattgcttagatttgcaaaatttgagttacttccaagttctggttttggtggtatcatatcaaaaccatacatggttctcgatgcagctgcactagagaacctggagatttttgaaaacagcagaaatggagactcttcagggacaatgtatgcacaattgaatcactgtgtgacggcatttgggaagagattgcttaagacatggcttgcgagacctctgtatcatgtagagtcaattaaggaacgccaggatgctgtctcaagtttacagggaatcaaccttcctcacgcacttgaatttcgaaaagcaatggctaggcttccggacatggagcgcttgcttgcacgggtcttcgctagcagtaaagctactggaaggaatgcaaacaaagtggttttatatgaggatgccgccaaaaaacagctccaggagtttattgcagctctacgcggttgtgaattaatggcggcaacaagttgctctcttggagtcaacttgggaaatgttgaatctcgacaacttcatcatttgctgacacctggtaaaggtcttcctaatgtcaactcagttttaaagcacttcaaggatggctttgattgggtagaagccaatagttcaggtcgtataatacctcatgaaggagttgatactgaatacgatgctgcatgtggaaaagtaaaagagatcgagtctcatttaaccaagtaccttaacgaacaaagggaattactcggagataaatcgatcacttatgtcacaattggaaaagacgcatacctattggaagttccagaaagtttgcgtgagagtatacctcaggattatgaattacgttcatccaaaaagggtttctttaggtactggacaccaaatattaagaagtcattgactgagctctcacaagctgaatctgatagggagtcctcacttaaaagcattttgcagaggttaattggacaattctgcgagcatcatattaagtggagacagttggtctctgtgactgctgaactggatgttttaatcagtctagcaattgcaagtgattattacgagggacccacctgtcggcctgttatcatgagttcatcagatacagatgaagtacccctcttgtccgcaaatagtttgggacatcctgttcttagaagtgattctttaggaaaaggtacatttgtccccaatgacattactcttggaggttctggtcatgcaagctttgtccttctcactggccctaacatgggtgggaagtcaactctgcttcgccaagtttgcttggctgtgattttagcccagttaggagcaaatgtgcctgcagagagctttgagctatctcctgttgatcgaatctttgttcggatgggtgctaaagatcatattatggtaggccaaagtacatttctgacggagctgtcagaaactgcaacaatgctgtcatctgcttctcgtaactcattggtagcactggatgaacttggacgtgggacatcaacttcagatggacaagccattgcggaatcagttcttgaacattttgtccacaaggttcactgtcgaggaatgttttctactcactatcacaggctagctgttgattatcagaataattctcaggtttcactctgccatatggcatgccatgttggaaatggagatgctggtgtagaagaagtgacatttctttacagattgactcccggtgcttgtcctaaaagttatggtgtcaacattgctcggttagctggacttcctatttctgtgcttcaaaaagctgctgctaagtccagggaattcgaagctgcatatggtaaacacttgaagcaatctgaagatagctttccctttcaaagtccagttaacaaggtggttgagtgcatccaaaaggttaccaacatcgtggcaaagttgactagtcacgagtctactgagggcatcaacattgactccctgactgaagtttggcataaagcaagattgcttgagcaacaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

1260

Amino Acids

139.29

Weight (kDa)

5.9

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10950
rosa_chinensis	RchiOBHm_Chr7g0241701
rosa_multiflora	Rmu_sc0002268.1_g000005 Rmu_sc0017195.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054410
rosa_rugosa	Rorug07G0346500
rosa_samantha	Rh2BG003900 Rh7AG501000 Rh7BG472200
rosa_wichuraiana	Rw7G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2850, 3199
AccB7I	CCANNNNNTGG	2 cut(s)	217, 1823
AccBSI	CCGCTC	1 cut(s)	639
AccI	GTMKAC	2 cut(s)	2596, 3710
AccII	CGCG	3 cut(s)	411, 609, 2235
AccIII	TCCGGA	1 cut(s)	2107
AclWI	GGATC	3 cut(s)	176, 239, 884
AcoI	YGGCCR	3 cut(s)	208, 351, 940
AcsI	RAATTY	7 cut(s)	649, 1109, 1342, 1583, 1802, 2081, 3578
AcuI	CTGAAG	5 cut(s)	299, 1905, 3267, 3636, 3762
AdeI	CACNNNGTG	1 cut(s)	1954
AfeI	AGCGCT	2 cut(s)	401, 2120
AflII	CTTAAG	1 cut(s)	1979
AflIII	ACRYGT	1 cut(s)	685
AhdI	GACNNNNNGTC	1 cut(s)	2777
AhlI	ACTAGT	4 cut(s)	514, 1486, 1555, 3698
AjiI	CACGTC	2 cut(s)	8, 3269
AjnI	CCWGG	6 cut(s)	260, 1884, 2031, 2211, 2323, 3572
AjuI	GAANNNNNNNTTGG	4 cut(s)	2618, 2650, 3171, 3203
AloI	GAACNNNNNNTCC	4 cut(s)	2910, 2942, 3309, 3341
Alw21I	GWGCWC	2 cut(s)	1729, 2682
Alw44I	GTGCAC	1 cut(s)	1725
AlwI	GGATC	3 cut(s)	176, 239, 884
AlwNI	CAGNNNCTG	2 cut(s)	1328, 3209
Ama87I	CYCGRG	3 cut(s)	124, 428, 836
Aor13HI	TCCGGA	1 cut(s)	2107
Aor51HI	AGCGCT	2 cut(s)	401, 2120
AoxI	GGCC	9 cut(s)	208, 258, 351, 700, 940, 1475, 2855, 3019, 3175
ApaLI	GTGCAC	1 cut(s)	1725
ApeKI	GCWGC	9 cut(s)	746, 1671, 1868, 1871, 2225, 2447, 3560, 3563, 3587
ApoI	RAATTY	7 cut(s)	649, 1109, 1342, 1583, 1802, 2081, 3578
ArsI	GACNNNNNNTTYG	4 cut(s)	261, 293, 331, 363
AseI	ATTAAT	1 cut(s)	2246
Asp700I	GAANNNNTTC	3 cut(s)	2938, 3309, 3352
AspLEI	GCGC	6 cut(s)	26, 51, 402, 408, 609, 2121
AspS9I	GGNCC	5 cut(s)	258, 413, 1476, 2843, 3020
AsuC2I	CCSGG	4 cut(s)	125, 126, 1708, 3486
AsuHPI	GGTGA	2 cut(s)	797, 1088
AsuII	TTCGAA	2 cut(s)	2086, 3582
AsuNHI	GCTAGC	2 cut(s)	2141, 3373
AvaI	CYCGRG	3 cut(s)	124, 428, 836
AvaII	GGWCC	2 cut(s)	413, 2843
AxyI	CCTNAGG	1 cut(s)	2601
BaeGI	GKGCMC	1 cut(s)	1729
BaeI	ACNNNNGTAYC	4 cut(s)	1988, 2021, 2946, 2979
BalI	TGGCCA	2 cut(s)	353, 942
BanII	GRGCYC	1 cut(s)	2682
BauI	CACGAG	1 cut(s)	3704
BbsI	GAAGAC	5 cut(s)	456, 534, 674, 2128, 2327
Bbv12I	GWGCWC	2 cut(s)	1729, 2682
BbvI	GCAGC	9 cut(s)	733, 1658, 1858, 1880, 2237, 2434, 3547, 3550, 3574
BccI	CCATC	8 cut(s)	97, 320, 994, 1183, 1709, 2366, 3142, 3281
BceAI	ACGGC	4 cut(s)	37, 223, 1617, 1974
BcgI	CGANNNNNNTGC	2 cut(s)	1853, 1887
BciT130I	CCWGG	6 cut(s)	262, 1886, 2033, 2213, 2325, 3574
BcnI	CCSGG	4 cut(s)	125, 126, 1708, 3486
BcuI	ACTAGT	4 cut(s)	514, 1486, 1555, 3698
BfmI	CTRYAG	2 cut(s)	1627, 3102
BfoI	RGCGCY	3 cut(s)	52, 403, 2122
BfrI	CTTAAG	1 cut(s)	1979
BmcAI	AGTACT	1 cut(s)	1530
Bme18I	GGWCC	2 cut(s)	413, 2843
BmeRI	GACNNNNNGTC	1 cut(s)	2777
BmeT110I	CYCGRG	3 cut(s)	124, 428, 836
BmgBI	CACGTC	2 cut(s)	8, 3269
BmgT120I	GGNCC	5 cut(s)	258, 413, 1476, 2843, 3020
BmiI	GGNNCC	6 cut(s)	130, 616, 1572, 1705, 2844, 2845
BmrI	ACTGGG	2 cut(s)	253, 3076
BmtI	GCTAGC	2 cut(s)	2145, 3377
BmuI	ACTGGG	2 cut(s)	253, 3076
BpiI	GAAGAC	5 cut(s)	456, 534, 674, 2128, 2327
BplI	GAGNNNNNCTC	4 cut(s)	1199, 1231, 2584, 2616
BpmI	CTGGAG	3 cut(s)	569, 1907, 2195
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu14I	TTCGAA	2 cut(s)	2086, 3582
BpuEI	CTTGAG	2 cut(s)	689, 2029
BpuMI	CCSGG	4 cut(s)	125, 126, 1708, 3486
Bsa29I	ATCGAT	1 cut(s)	2528
BsaBI	GATNNNNATC	1 cut(s)	186
BsaI	GGTCTC	3 cut(s)	374, 1990, 2785
BsaJI	CCNNGG	7 cut(s)	124, 409, 429, 835, 1479, 1707, 3573
BsaWI	WCCGGW	2 cut(s)	617, 2107
Bse21I	CCTNAGG	1 cut(s)	2601
Bse3DI	GCAATG	4 cut(s)	1784, 2100, 3297, 3516
Bse8I	GATNNNNATC	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	2107
BseBI	CCWGG	6 cut(s)	262, 1886, 2033, 2213, 2325, 3574
BseCI	ATCGAT	1 cut(s)	2528
BseDI	CCNNGG	7 cut(s)	124, 409, 429, 835, 1479, 1707, 3573
BseJI	GATNNNNATC	1 cut(s)	186
BseMI	GCAATG	4 cut(s)	1784, 2100, 3297, 3516
BseRI	GAGGAG	2 cut(s)	452, 536
BseSI	GKGCMC	1 cut(s)	1729
BseXI	GCAGC	9 cut(s)	733, 1658, 1858, 1880, 2237, 2434, 3547, 3550, 3574
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	3 cut(s)	1269, 1462, 1857
Bsh1236I	CGCG	3 cut(s)	411, 609, 2235
BshFI	GGCC	9 cut(s)	210, 260, 353, 702, 942, 1477, 2857, 3021, 3177
BshVI	ATCGAT	1 cut(s)	2528
BsiHKAI	GWGCWC	2 cut(s)	1729, 2682
BsiHKCI	CYCGRG	3 cut(s)	124, 428, 836
BsiSI	CCGG	6 cut(s)	125, 477, 618, 1707, 2108, 3486
BslFI	GGGAC	6 cut(s)	594, 1939, 2856, 2931, 2948, 3286
BsmBI	CGTCTC	1 cut(s)	1511
BsmFI	GGGAC	6 cut(s)	594, 1939, 2856, 2931, 2948, 3286
BsmI	GAATGC	1 cut(s)	2170
BsnI	GGCC	9 cut(s)	210, 260, 353, 702, 942, 1477, 2857, 3021, 3177
Bso31I	GGTCTC	3 cut(s)	374, 1990, 2785
BsoBI	CYCGRG	3 cut(s)	124, 428, 836
Bsp119I	TTCGAA	2 cut(s)	2086, 3582
Bsp1286I	GDGCHC	2 cut(s)	1729, 2682
Bsp13I	TCCGGA	1 cut(s)	2107
Bsp143I	GATC	8 cut(s)	181, 231, 889, 1057, 2469, 2529, 3130, 3160
BspANI	GGCC	9 cut(s)	210, 260, 353, 702, 942, 1477, 2857, 3021, 3177
BspDI	ATCGAT	1 cut(s)	2528
BspEI	TCCGGA	1 cut(s)	2107
BspFNI	CGCG	3 cut(s)	411, 609, 2235
BspHI	TCATGA	2 cut(s)	2419, 2865
BspLI	GGNNCC	6 cut(s)	130, 616, 1572, 1705, 2844, 2845
BspMAI	CTGCAG	1 cut(s)	3106
BspOI	GCTAGC	2 cut(s)	2145, 3377
BspPI	GGATC	3 cut(s)	176, 239, 884
BspT104I	TTCGAA	2 cut(s)	2086, 3582
BspTI	CTTAAG	1 cut(s)	1979
BspTNI	GGTCTC	3 cut(s)	374, 1990, 2785
BsrBI	CCGCTC	1 cut(s)	639
BsrDI	GCAATG	4 cut(s)	1784, 2100, 3297, 3516
BssECI	CCNNGG	7 cut(s)	124, 409, 429, 835, 1479, 1707, 3573
BssMI	GATC	8 cut(s)	181, 231, 889, 1057, 2469, 2529, 3130, 3160
BssNAI	GTATAC	1 cut(s)	2597
BssSI	CACGAG	1 cut(s)	3704
Bst1107I	GTATAC	1 cut(s)	2597
Bst2BI	CACGAG	1 cut(s)	3704
Bst2UI	CCWGG	6 cut(s)	262, 1886, 2033, 2213, 2325, 3574
Bst4CI	ACNGT	7 cut(s)	385, 455, 1422, 1606, 1952, 2775, 3341
Bst6I	CTCTTC	3 cut(s)	330, 1924, 1964
BstAFI	CTTAAG	1 cut(s)	1979
BstBI	TTCGAA	2 cut(s)	2086, 3582
BstDSI	CCRYGG	2 cut(s)	409, 1479
BstEII	GGTNACC	2 cut(s)	1145, 3673
BstENI	CCTNNNNNAGG	3 cut(s)	796, 2328, 2421
BstFNI	CGCG	3 cut(s)	411, 609, 2235
BstH2I	RGCGCY	3 cut(s)	52, 403, 2122
BstHHI	GCGC	6 cut(s)	26, 51, 402, 408, 609, 2121
BstKTI	GATC	8 cut(s)	184, 234, 892, 1060, 2472, 2532, 3133, 3163
BstMBI	GATC	8 cut(s)	181, 231, 889, 1057, 2469, 2529, 3130, 3160
BstMWI	GCNNNNNNNGC	5 cut(s)	408, 1671, 1733, 3060, 3527
BstNI	CCWGG	6 cut(s)	262, 1886, 2033, 2213, 2325, 3574
BstNSI	RCATGY	4 cut(s)	689, 1124, 2454, 3426
BstPI	GGTNACC	2 cut(s)	1145, 3673
BstSFI	CTRYAG	2 cut(s)	1627, 3102
BstSLI	GKGCMC	1 cut(s)	1729
BstUI	CGCG	3 cut(s)	411, 609, 2235
BstV1I	GCAGC	9 cut(s)	733, 1658, 1858, 1880, 2237, 2434, 3547, 3550, 3574
BstV2I	GAAGAC	5 cut(s)	456, 534, 674, 2128, 2327
BstXI	CCANNNNNNTGG	1 cut(s)	3685
BstZ17I	GTATAC	1 cut(s)	2597
Bsu15I	ATCGAT	1 cut(s)	2528
Bsu36I	CCTNAGG	1 cut(s)	2601
BsuRI	GGCC	9 cut(s)	210, 260, 353, 702, 942, 1477, 2857, 3021, 3177
BsuTUI	ATCGAT	1 cut(s)	2528
BtgI	CCRYGG	2 cut(s)	409, 1479
BtgZI	GCGATG	1 cut(s)	495
BtrI	CACGTC	2 cut(s)	8, 3269
BtsI	GCAGTG	2 cut(s)	1329, 1450
BtsIMutI	CAGTG	7 cut(s)	460, 1329, 1450, 1948, 3015, 3251, 3337
CaiI	CAGNNNCTG	2 cut(s)	1328, 3209
CciI	TCATGA	2 cut(s)	2419, 2865
CfoI	GCGC	6 cut(s)	26, 51, 402, 408, 609, 2121
Cfr13I	GGNCC	5 cut(s)	258, 413, 1476, 2843, 3020
Cfr42I	CCGCGG	1 cut(s)	412
Cfr9I	CCCGGG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	2528
CseI	GACGC	1 cut(s)	2564
CsiI	ACCWGGT	1 cut(s)	2323
CspCI	CAANNNNNGTGG	8 cut(s)	661, 696, 1104, 1139, 1192, 1227, 2157, 2192
DpnI	GATC	8 cut(s)	183, 233, 891, 1059, 2471, 2531, 3132, 3162
DpnII	GATC	8 cut(s)	181, 231, 889, 1057, 2469, 2529, 3130, 3160
DraI	TTTAAA	1 cut(s)	2358
DraIII	CACNNNGTG	1 cut(s)	1954
DrdI	GACNNNNNNGTC	2 cut(s)	2850, 3199
DriI	GACNNNNNGTC	1 cut(s)	2777
DseDI	GACNNNNNNGTC	2 cut(s)	2850, 3199
EaeI	YGGCCR	3 cut(s)	208, 351, 940
Eam1104I	CTCTTC	3 cut(s)	330, 1924, 1964
Eam1105I	GACNNNNNGTC	1 cut(s)	2777
EarI	CTCTTC	3 cut(s)	330, 1924, 1964
EciI	GGCGGA	2 cut(s)	449, 657
Ecl136II	GAGCTC	1 cut(s)	2680
Eco24I	GRGCYC	1 cut(s)	2682
Eco31I	GGTCTC	3 cut(s)	374, 1990, 2785
Eco47I	GGWCC	2 cut(s)	413, 2843
Eco47III	AGCGCT	2 cut(s)	401, 2120
Eco53kI	GAGCTC	1 cut(s)	2680
Eco57I	CTGAAG	5 cut(s)	299, 1905, 3267, 3636, 3762
Eco81I	CCTNAGG	1 cut(s)	2601
Eco88I	CYCGRG	3 cut(s)	124, 428, 836
Eco91I	GGTNACC	2 cut(s)	1145, 3673
EcoICRI	GAGCTC	1 cut(s)	2680
EcoNI	CCTNNNNNAGG	3 cut(s)	796, 2328, 2421
EcoO109I	RGGNCCY	2 cut(s)	258, 2843
EcoO65I	GGTNACC	2 cut(s)	1145, 3673
EcoRI	GAATTC	2 cut(s)	1583, 3578
EcoRII	CCWGG	6 cut(s)	260, 1884, 2031, 2211, 2323, 3572
EcoT22I	ATGCAT	1 cut(s)	1122
EcoT38I	GRGCYC	1 cut(s)	2682
Esp3I	CGTCTC	1 cut(s)	1511
FalI	AAGNNNNNCTT	6 cut(s)	2360, 2392, 2621, 2653, 2926, 2958
FaqI	GGGAC	6 cut(s)	594, 1939, 2856, 2931, 2948, 3286
FauNDI	CATATG	3 cut(s)	1650, 3417, 3592
FblI	GTMKAC	2 cut(s)	2596, 3710
FriOI	GRGCYC	1 cut(s)	2682
GlaI	GCGC	6 cut(s)	25, 50, 401, 407, 608, 2120
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	3 cut(s)	569, 1907, 2195
HaeII	RGCGCY	3 cut(s)	52, 403, 2122
HaeIII	GGCC	9 cut(s)	210, 260, 353, 702, 942, 1477, 2857, 3021, 3177
HapII	CCGG	6 cut(s)	125, 477, 618, 1707, 2108, 3486
HgaI	GACGC	1 cut(s)	2564
HhaI	GCGC	6 cut(s)	26, 51, 402, 408, 609, 2121
Hin6I	GCGC	6 cut(s)	24, 49, 400, 406, 607, 2119
HinP1I	GCGC	6 cut(s)	24, 49, 400, 406, 607, 2119
HincII	GTYRAC	7 cut(s)	40, 2278, 2347, 3042, 3514, 3646, 3696
HindII	GTYRAC	7 cut(s)	40, 2278, 2347, 3042, 3514, 3646, 3696
HindIII	AAGCTT	1 cut(s)	3001
HpaI	GTTAAC	2 cut(s)	40, 3646
HpaII	CCGG	6 cut(s)	125, 477, 618, 1707, 2108, 3486
HphI	GGTGA	2 cut(s)	797, 1088
Hpy99I	CGWCG	5 cut(s)	12, 15, 326, 335, 1203
HpyAV	CCTTC	9 cut(s)	73, 162, 263, 1066, 1135, 2075, 2154, 2417, 3020
HpyCH4III	ACNGT	7 cut(s)	385, 455, 1422, 1606, 1952, 2775, 3341
HpyCH4IV	ACGT	4 cut(s)	7, 1237, 2617, 3268
HpyF10VI	GCNNNNNNNGC	5 cut(s)	408, 1671, 1733, 3060, 3527
HpySE526I	ACGT	4 cut(s)	7, 1237, 2617, 3268
HspAI	GCGC	6 cut(s)	24, 49, 400, 406, 607, 2119
KflI	GGGWCCC	1 cut(s)	2843
Kpn2I	TCCGGA	1 cut(s)	2107
KspAI	GTTAAC	2 cut(s)	40, 3646
KspI	CCGCGG	1 cut(s)	412
Kzo9I	GATC	8 cut(s)	181, 231, 889, 1057, 2469, 2529, 3130, 3160
LmnI	GCTCC	9 cut(s)	146, 620, 1043, 1192, 1703, 2116, 2214, 3089, 3196
Lsp1109I	GCAGC	9 cut(s)	733, 1658, 1858, 1880, 2237, 2434, 3547, 3550, 3574
MabI	ACCWGGT	1 cut(s)	2323
MaeII	ACGT	4 cut(s)	7, 1237, 2617, 3268
MalI	GATC	8 cut(s)	183, 233, 891, 1059, 2471, 2531, 3132, 3162
MbiI	CCGCTC	1 cut(s)	639
MboI	GATC	8 cut(s)	181, 231, 889, 1057, 2469, 2529, 3130, 3160
MfeI	CAATTG	3 cut(s)	1940, 2544, 2820
MhlI	GDGCHC	2 cut(s)	1729, 2682
MlsI	TGGCCA	2 cut(s)	353, 942
MluNI	TGGCCA	2 cut(s)	353, 942
MmeI	TCCRAC	1 cut(s)	3412
Mox20I	TGGCCA	2 cut(s)	353, 942
Mph1103I	ATGCAT	1 cut(s)	1122
MroI	TCCGGA	1 cut(s)	2107
MroXI	GAANNNNTTC	3 cut(s)	2938, 3309, 3352
MscI	TGGCCA	2 cut(s)	353, 942
Msp20I	TGGCCA	2 cut(s)	353, 942
MspA1I	CMGCKG	2 cut(s)	411, 1871
MspCI	CTTAAG	1 cut(s)	1979
MspI	CCGG	6 cut(s)	125, 477, 618, 1707, 2108, 3486
MunI	CAATTG	3 cut(s)	1940, 2544, 2820
Mva1269I	GAATGC	1 cut(s)	2170
MvaI	CCWGG	6 cut(s)	262, 1886, 2033, 2213, 2325, 3574
MvnI	CGCG	3 cut(s)	411, 609, 2235
MwoI	GCNNNNNNNGC	5 cut(s)	408, 1671, 1733, 3060, 3527
NciI	CCSGG	4 cut(s)	125, 126, 1708, 3486
NdeI	CATATG	3 cut(s)	1650, 3417, 3592
NdeII	GATC	8 cut(s)	181, 231, 889, 1057, 2469, 2529, 3130, 3160
NheI	GCTAGC	2 cut(s)	2141, 3373
NlaIV	GGNNCC	6 cut(s)	130, 616, 1572, 1705, 2844, 2845
NmuCI	GTSAC	7 cut(s)	3, 1324, 1954, 2539, 2785, 3460, 3701
NsiI	ATGCAT	1 cut(s)	1122
NspI	RCATGY	4 cut(s)	689, 1124, 2454, 3426
NspV	TTCGAA	2 cut(s)	2086, 3582
PaeI	GCATGC	1 cut(s)	3426
PagI	TCATGA	2 cut(s)	2419, 2865
PciI	ACATGT	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 330
PctI	GAATGC	1 cut(s)	2170
PdmI	GAANNNNTTC	3 cut(s)	2938, 3309, 3352
PflMI	CCANNNNNTGG	2 cut(s)	217, 1823
PfoI	TCCNGGA	1 cut(s)	2211
PpuMI	RGGWCCY	1 cut(s)	2843
PscI	ACATGT	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	2246
Psp124BI	GAGCTC	1 cut(s)	2682
Psp5II	RGGWCCY	1 cut(s)	2843
Psp6I	CCWGG	6 cut(s)	260, 1884, 2031, 2211, 2323, 3572
PspEI	GGTNACC	2 cut(s)	1145, 3673
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	6 cut(s)	260, 1884, 2031, 2211, 2323, 3572
PspN4I	GGNNCC	6 cut(s)	130, 616, 1572, 1705, 2844, 2845
PspPI	GGNCC	5 cut(s)	258, 413, 1476, 2843, 3020
PspPPI	RGGWCCY	1 cut(s)	2843
PstI	CTGCAG	1 cut(s)	3106
PstNI	CAGNNNCTG	2 cut(s)	1328, 3209
PvuII	CAGCTG	1 cut(s)	1871
SacI	GAGCTC	1 cut(s)	2682
SacII	CCGCGG	1 cut(s)	412
Sau3AI	GATC	8 cut(s)	181, 231, 889, 1057, 2469, 2529, 3130, 3160
Sau96I	GGNCC	5 cut(s)	258, 413, 1476, 2843, 3020
ScaI	AGTACT	1 cut(s)	1530
SduI	GDGCHC	2 cut(s)	1729, 2682
SexAI	ACCWGGT	1 cut(s)	2323
SfcI	CTRYAG	2 cut(s)	1627, 3102
Sfr303I	CCGCGG	1 cut(s)	412
SfuI	TTCGAA	2 cut(s)	2086, 3582
SgrBI	CCGCGG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	413, 2843
SmaI	CCCGGG	1 cut(s)	126
SmlI	CTYRAG	4 cut(s)	704, 1979, 2044, 3767
SmoI	CTYRAG	4 cut(s)	704, 1979, 2044, 3767
SpeI	ACTAGT	4 cut(s)	514, 1486, 1555, 3698
SphI	GCATGC	1 cut(s)	3426
SspI	AATATT	2 cut(s)	781, 2659
SstI	GAGCTC	1 cut(s)	2682
TaaI	ACNGT	7 cut(s)	385, 455, 1422, 1606, 1952, 2775, 3341
TaiI	ACGT	4 cut(s)	10, 1240, 2620, 3271
TatI	WGTACW	3 cut(s)	240, 1528, 3182
TauI	GCSGC	6 cut(s)	411, 612, 615, 642, 2198, 2255
TscAI	CASTG	7 cut(s)	460, 1329, 1450, 1955, 3022, 3258, 3344
TseFI	GTSAC	7 cut(s)	3, 1324, 1954, 2539, 2785, 3460, 3701
TseI	GCWGC	9 cut(s)	746, 1671, 1868, 1871, 2225, 2447, 3560, 3563, 3587
Tsp45I	GTSAC	7 cut(s)	3, 1324, 1954, 2539, 2785, 3460, 3701
TspDTI	ATGAA	9 cut(s)	1029, 1085, 2297, 2436, 2610, 2625, 2862, 2901, 3273
TspGWI	ACGGA	4 cut(s)	643, 818, 1535, 3209
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	7 cut(s)	460, 1329, 1450, 1955, 3022, 3258, 3344
Van91I	CCANNNNNTGG	2 cut(s)	217, 1823
Vha464I	CTTAAG	1 cut(s)	1979
VneI	GTGCAC	1 cut(s)	1725
VpaK11BI	GGWCC	2 cut(s)	413, 2843
VspI	ATTAAT	1 cut(s)	2246
XagI	CCTNNNNNAGG	3 cut(s)	796, 2328, 2421
XapI	RAATTY	7 cut(s)	649, 1109, 1342, 1583, 1802, 2081, 3578
XbaI	TCTAGA	1 cut(s)	1774
XceI	RCATGY	4 cut(s)	689, 1124, 2454, 3426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3434
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	2596, 3710
XmnI	GAANNNNTTC	3 cut(s)	2938, 3309, 3352
ZrmI	AGTACT	1 cut(s)	1530
Zsp2I	ATGCAT	1 cut(s)	1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.