Rroxscaffold_1G00054410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018287
Physical Location & Seq
Forward (+)
75828834 .. 75829477
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054410.1

Sequence Viewer

Length: 564 bp
ATGCCTTTGCCTCTCCAATCCAAGCCCAATCTCAATCCCAAGAAATTCGAATTGCTTCAACGGACCGTCCGGACCTTTAAGCGCTTGCGGCGAGGTCCTTTGCCCACTCTCGAGGCTCGGTGGCGGAGGAGGACGAGGAAGACGGATGATGATGATGATGATGATGATTCCGGCGATGAGGATTGGGGAAAGAGTGTGGAAAGGAAGGTGCTTGAGCCGGAGGAGGAAGACGAGGTTATGGAATTGGAGGATGAGCATGATGATGAGGAAGTGCCCAAGTTCAAAGGAAGGCGCGGCGGTTCGGTGGTAAACCGAAATTCATATTCGTTACAAAATTTCAATCAAATTGGCGGGAATATTCGCACCCACCTCGTCGGAATCCGACCCACCTCGCAGCCGATTAATGGGTTCTCTCCCGAACCGGTGAGACAACCACAATGGGGGAAGAAGAGCAGAGCAGCAGTCAAGGCTAAGAACCGGACCAACCCTCCGGAAGCCTCTCGAAAATCTACAACGCCGCGTGCCGAGTCACCGCTTCGCCGCCGTGGTCTCGTAGCTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.51

Weight (kDa)

9.81

Isoelectric Point (pI)

72.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10950
rosa_chinensis RchiOBHm_Chr7g0241701
rosa_multiflora Rmu_sc0002268.1_g000005 Rmu_sc0017195.1_g000001
rosa_roxburghii Rroxscaffold_1G00054410
rosa_rugosa Rorug07G0346500
rosa_samantha Rh2BG003900 Rh7AG501000 Rh7BG472200
rosa_wichuraiana Rw7G042330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 294, 520
AccIII TCCGGA 2 cut(s) 69, 490
AciI CCGC 8 cut(s) 88, 124, 294, 297, 351, 518, 533, 541
AcsI RAATTY 3 cut(s) 44, 316, 334
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 404, 440
AgeI ACCGGT 1 cut(s) 421
AgsI TTSAA 3 cut(s) 59, 283, 340
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
Alw26I GTCTC 2 cut(s) 421, 554
Ama87I CYCGRG 1 cut(s) 110
Aor13HI TCCGGA 2 cut(s) 69, 490
Aor51HI AGCGCT 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 394, 458
ApoI RAATTY 3 cut(s) 44, 316, 334
AseI ATTAAT 1 cut(s) 402
AsiGI ACCGGT 1 cut(s) 421
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 2 cut(s) 84, 294
AspS9I GGNCC 4 cut(s) 63, 72, 95, 480
AsuHPI GGTGA 2 cut(s) 436, 522
AsuII TTCGAA 1 cut(s) 48
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 4 cut(s) 63, 72, 95, 480
BaeGI GKGCMC 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 146, 234
BbvI GCAGC 2 cut(s) 406, 470
BceAI ACGGC 1 cut(s) 528
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BcoDI GTCTC 2 cut(s) 421, 554
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 6 cut(s) 89, 295, 395, 459, 518, 541
BlsI GCNGC 6 cut(s) 90, 296, 396, 460, 519, 542
Bme18I GGWCC 4 cut(s) 63, 72, 95, 480
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 4 cut(s) 63, 72, 95, 480
BpiI GAAGAC 2 cut(s) 146, 234
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 544
BsaWI WCCGGW 4 cut(s) 69, 421, 477, 490
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 440
Bse118I RCCGGY 1 cut(s) 421
BseAI TCCGGA 2 cut(s) 69, 490
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 2 cut(s) 151, 256
BseLI CCNNNNNNNGG 2 cut(s) 404, 440
BseRI GAGGAG 2 cut(s) 142, 236
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 2 cut(s) 406, 470
Bsh1236I CGCG 2 cut(s) 294, 520
BshTI ACCGGT 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 6 cut(s) 70, 171, 218, 422, 478, 491
BslI CCNNNNNNNGG 2 cut(s) 404, 440
BsmAI GTCTC 2 cut(s) 421, 554
Bso31I GGTCTC 1 cut(s) 554
BsoBI CYCGRG 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 276
Bsp13I TCCGGA 2 cut(s) 69, 490
BspACI CCGC 8 cut(s) 88, 124, 294, 297, 351, 518, 533, 541
BspEI TCCGGA 2 cut(s) 69, 490
BspFNI CGCG 2 cut(s) 294, 520
BspQI GCTCTTC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 48
BspTNI GGTCTC 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 421
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 544
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 443
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 86, 522
BstDEI CTNAG 1 cut(s) 471
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 151, 256
BstFNI CGCG 2 cut(s) 294, 520
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 294
BstMAI GTCTC 2 cut(s) 421, 554
BstMWI GCNNNNNNNGC 2 cut(s) 88, 467
BstSLI GKGCMC 1 cut(s) 276
BstUI CGCG 2 cut(s) 294, 520
BstV1I GCAGC 2 cut(s) 406, 470
BstV2I GAAGAC 2 cut(s) 146, 234
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 2 cut(s) 151, 256
Cac8I GCNNGC 2 cut(s) 86, 522
CfoI GCGC 2 cut(s) 84, 294
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 4 cut(s) 63, 72, 95, 480
CpoI CGGWCCG 1 cut(s) 63
CspAI ACCGGT 1 cut(s) 421
CspI CGGWCCG 1 cut(s) 63
CviAII CATG 1 cut(s) 257
CviJI RGCY 7 cut(s) 25, 116, 217, 397, 470, 497, 557
CviKI_1 RGCY 7 cut(s) 25, 116, 217, 397, 470, 497, 557
DdeI CTNAG 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
EciI GGCGGA 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 4 cut(s) 63, 72, 95, 480
Eco47III AGCGCT 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 95
FaeI CATG 1 cut(s) 260
FaiI YATR 3 cut(s) 239, 258, 322
FatI CATG 1 cut(s) 256
FauI CCCGC 1 cut(s) 344
Fnu4HI GCNGC 6 cut(s) 89, 295, 395, 459, 518, 541
FokI GGATG 2 cut(s) 158, 263
Fsp4HI GCNGC 6 cut(s) 89, 295, 395, 459, 518, 541
GlaI GCGC 2 cut(s) 83, 293
GluI GCNGC 6 cut(s) 89, 295, 395, 459, 518, 541
HaeII RGCGCY 1 cut(s) 85
HapII CCGG 6 cut(s) 70, 171, 218, 422, 478, 491
HhaI GCGC 2 cut(s) 84, 294
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 2 cut(s) 82, 292
HinP1I GCGC 2 cut(s) 82, 292
HinfI GANTC 3 cut(s) 167, 378, 527
HpaII CCGG 6 cut(s) 70, 171, 218, 422, 478, 491
HphI GGTGA 2 cut(s) 436, 522
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 377, 383
Hpy188III TCNNGA 5 cut(s) 70, 110, 416, 491, 501
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 199, 282
HpyCH4III ACNGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 467
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 2 cut(s) 82, 292
Kpn2I TCCGGA 2 cut(s) 69, 490
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 1 cut(s) 562
LpnPI CCDG 6 cut(s) 83, 184, 231, 435, 491, 504
Lsp1109I GCAGC 2 cut(s) 406, 470
MaeIII GTNAC 2 cut(s) 327, 528
MboII GAAGA 4 cut(s) 151, 239, 457, 460
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 6 cut(s) 44, 50, 242, 316, 334, 345
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 2 cut(s) 355, 406
MroI TCCGGA 2 cut(s) 69, 490
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 2 cut(s) 78, 402
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 6 cut(s) 70, 171, 218, 422, 478, 491
MvnI CGCG 2 cut(s) 294, 520
MwoI GCNNNNNNNGC 2 cut(s) 88, 467
NlaIII CATG 1 cut(s) 260
NmeAIII GCCGAG 1 cut(s) 550
NmuCI GTSAC 1 cut(s) 528
NspV TTCGAA 1 cut(s) 48
PaeR7I CTCGAG 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 167, 378
PinAI ACCGGT 1 cut(s) 421
PkrI GCNGC 6 cut(s) 90, 296, 396, 460, 519, 542
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PpuMI RGGWCCY 1 cut(s) 95
PshBI ATTAAT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 95
PspPI GGNCC 4 cut(s) 63, 72, 95, 480
PspPPI RGGWCCY 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 261
Rsr2I CGGWCCG 1 cut(s) 63
RsrII CGGWCCG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 78, 402
SatI GCNGC 6 cut(s) 89, 295, 395, 459, 518, 541
Sau96I GGNCC 4 cut(s) 63, 72, 95, 480
SchI GAGTC 1 cut(s) 536
SduI GDGCHC 1 cut(s) 276
SetI ASST 7 cut(s) 77, 97, 210, 237, 372, 392, 559
Sfr274I CTCGAG 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 48
SinI GGWCC 4 cut(s) 63, 72, 95, 480
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 110, 212
SmoI CTYRAG 2 cut(s) 110, 212
Sse9I AATT 6 cut(s) 44, 50, 242, 316, 334, 345
SsiI CCGC 8 cut(s) 88, 124, 294, 297, 351, 518, 533, 541
SspI AATATT 1 cut(s) 358
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 3 cut(s) 48, 111, 502
TasI AATT 6 cut(s) 44, 50, 242, 316, 334, 345
TauI GCSGC 4 cut(s) 91, 297, 520, 543
TfiI GAWTC 2 cut(s) 167, 378
Tru1I TTAA 2 cut(s) 78, 402
Tru9I TTAA 2 cut(s) 78, 402
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 2 cut(s) 394, 458
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 3 cut(s) 76, 158, 549
VpaK11BI GGWCC 4 cut(s) 63, 72, 95, 480
VspI ATTAAT 1 cut(s) 402
XapI RAATTY 3 cut(s) 44, 316, 334
XhoI CTCGAG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.