Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017195.1

Orthogroup ID

OG0018287

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 555

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

cctaaatctaaacctaaacccagcccgggttccagccctagctccaccacgccttcgcctctccaatccaagcctaagcccgatcccaatccgaagaaattgttgtacggccaagaggtggtcggcaagaggatcaaggtgtactgggcgagtgatagggcctggtacgaaggctgtgtcaagttgttcaataaggagagtggtaagcacttacttcagtacgacgatggcgacgaagagactttggatttggccaccgagaaaatcgagtggattcaagagaccgtccagacctttaagcgcttgcgccgcggtcctttgccgactcccgaggcggaggaggacaaggaagacagtgatgatgatgatgatgattccggcgatgaggattggggaaagagtgtggaaaagcaactagttgaggaggaggaggaggaagacgaggttatggaattggaggaggagcaagatgatgatgatgatgatgatgagggactccagcccaagcccaaagcaaggcgcggcggctccggtggtaaacggaagttgagcggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

185

Amino Acids

20.89

Weight (kDa)

4.45

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10950
rosa_chinensis	RchiOBHm_Chr7g0241701
rosa_multiflora	Rmu_sc0002268.1_g000005 Rmu_sc0017195.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054410
rosa_rugosa	Rorug07G0346500
rosa_samantha	Rh2BG003900 Rh7AG501000 Rh7BG472200
rosa_wichuraiana	Rw7G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	552
AccII	CGCG	2 cut(s)	312, 522
AciI	CCGC	6 cut(s)	310, 312, 335, 522, 525, 552
AclWI	GGATC	2 cut(s)	77, 140
AcoI	YGGCCR	2 cut(s)	109, 252
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	4 cut(s)	107, 143, 167, 221
AfeI	AGCGCT	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	26, 118, 516
AgsI	TTSAA	2 cut(s)	190, 278
AhlI	ACTAGT	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	233, 275
AlwI	GGATC	2 cut(s)	77, 140
Ama87I	CYCGRG	2 cut(s)	25, 329
Aor51HI	AGCGCT	1 cut(s)	302
AoxI	GGCC	3 cut(s)	109, 159, 252
ArsI	GACNNNNNNTTYG	4 cut(s)	162, 194, 232, 264
AspLEI	GCGC	3 cut(s)	303, 309, 522
AspS9I	GGNCC	2 cut(s)	159, 314
AsuC2I	CCSGG	2 cut(s)	26, 27
AvaI	CYCGRG	2 cut(s)	25, 329
AvaII	GGWCC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	357, 444
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	163
BcnI	CCSGG	2 cut(s)	26, 27
BcoDI	GTCTC	2 cut(s)	233, 275
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	2 cut(s)	39, 416
BfoI	RGCGCY	1 cut(s)	304
BisI	GCNGC	4 cut(s)	310, 523, 526, 553
BlsI	GCNGC	4 cut(s)	311, 524, 527, 554
Bme1390I	CCNGG	3 cut(s)	26, 27, 163
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	2 cut(s)	25, 329
BmgT120I	GGNCC	2 cut(s)	159, 314
BmiI	GGNNCC	2 cut(s)	31, 529
BmrFI	CCNGG	3 cut(s)	26, 27, 163
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	357, 444
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	75
BpuMI	CCSGG	2 cut(s)	26, 27
BsaBI	GATNNNNATC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	3 cut(s)	25, 310, 330
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 118, 516
Bse1I	ACTGG	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	3 cut(s)	25, 310, 330
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	3 cut(s)	26, 118, 516
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	7 cut(s)	353, 437, 440, 443, 446, 473, 476
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	2 cut(s)	312, 522
BshFI	GGCC	3 cut(s)	111, 161, 254
BsiHKCI	CYCGRG	2 cut(s)	25, 329
BsiSI	CCGG	3 cut(s)	26, 378, 531
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	3 cut(s)	26, 118, 516
BsmAI	GTCTC	2 cut(s)	233, 275
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	111, 161, 254
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	2 cut(s)	25, 329
Bsp143I	GATC	2 cut(s)	82, 132
BspACI	CCGC	6 cut(s)	310, 312, 335, 522, 525, 552
BspANI	GGCC	3 cut(s)	111, 161, 254
BspFNI	CGCG	2 cut(s)	312, 522
BspLI	GGNNCC	2 cut(s)	31, 529
BspPI	GGATC	2 cut(s)	77, 140
BspTNI	GGTCTC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	25, 310, 330
BssMI	GATC	2 cut(s)	82, 132
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	286, 356
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	310
BstFNI	CGCG	2 cut(s)	312, 522
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	3 cut(s)	303, 309, 522
BstKTI	GATC	2 cut(s)	85, 135
BstMAI	GTCTC	2 cut(s)	233, 275
BstMBI	GATC	2 cut(s)	82, 132
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	3 cut(s)	24, 25, 161
BstUI	CGCG	2 cut(s)	312, 522
BstV2I	GAAGAC	2 cut(s)	357, 444
BsuRI	GGCC	3 cut(s)	111, 161, 254
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	3 cut(s)	303, 309, 522
Cfr13I	GGNCC	2 cut(s)	159, 314
Cfr42I	CCGCGG	1 cut(s)	313
Cfr9I	CCCGGG	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	106, 142, 166, 220
CviQI	GTAC	4 cut(s)	106, 142, 166, 220
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	2 cut(s)	84, 134
DpnII	GATC	2 cut(s)	82, 132
EaeI	YGGCCR	2 cut(s)	109, 252
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	314
Eco47III	AGCGCT	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	2 cut(s)	25, 329
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	161
FaiI	YATR	1 cut(s)	449
FaqI	GGGAC	1 cut(s)	507
Fnu4HI	GCNGC	4 cut(s)	310, 523, 526, 553
Fsp4HI	GCNGC	4 cut(s)	310, 523, 526, 553
FspBI	CTAG	2 cut(s)	39, 416
GlaI	GCGC	3 cut(s)	302, 308, 521
GluI	GCNGC	4 cut(s)	310, 523, 526, 553
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	3 cut(s)	111, 161, 254
HapII	CCGG	3 cut(s)	26, 378, 531
HhaI	GCGC	3 cut(s)	303, 309, 522
Hin6I	GCGC	3 cut(s)	301, 307, 520
HinP1I	GCGC	3 cut(s)	301, 307, 520
HinfI	GANTC	4 cut(s)	274, 325, 374, 495
HpaII	CCGG	3 cut(s)	26, 378, 531
Hpy166II	GTNNAC	2 cut(s)	142, 539
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	278, 289, 329
Hpy8I	GTNNAC	2 cut(s)	142, 539
Hpy99I	CGWCG	2 cut(s)	227, 236
HpyAV	CCTTC	2 cut(s)	63, 164
HpyCH4III	ACNGT	2 cut(s)	286, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	75
HspAI	GCGC	3 cut(s)	301, 307, 520
KspI	CCGCGG	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	82, 132
LmnI	GCTCC	3 cut(s)	47, 463, 533
MaeI	CTAG	2 cut(s)	39, 416
MalI	GATC	2 cut(s)	84, 134
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	2 cut(s)	82, 132
MboII	GAAGA	4 cut(s)	106, 248, 362, 449
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	2 cut(s)	98, 452
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	319, 489
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	3 cut(s)	26, 378, 531
MspR9I	CCNGG	3 cut(s)	26, 27, 163
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	2 cut(s)	312, 522
MwoI	GCNNNNNNNGC	1 cut(s)	309
NciI	CCSGG	2 cut(s)	26, 27
NdeII	GATC	2 cut(s)	82, 132
NlaIV	GGNNCC	2 cut(s)	31, 529
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 231
PfeI	GAWTC	2 cut(s)	274, 374
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	311, 524, 527, 554
PleI	GAGTC	2 cut(s)	319, 489
PpsI	GAGTC	2 cut(s)	319, 489
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	31, 529
PspPI	GGNCC	2 cut(s)	159, 314
RsaI	GTAC	4 cut(s)	107, 143, 167, 221
RsaNI	GTAC	4 cut(s)	106, 142, 166, 220
SacII	CCGCGG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	310, 523, 526, 553
Sau3AI	GATC	2 cut(s)	82, 132
Sau96I	GGNCC	2 cut(s)	159, 314
SchI	GAGTC	2 cut(s)	319, 489
ScrFI	CCNGG	3 cut(s)	26, 27, 163
SetI	ASST	6 cut(s)	16, 44, 120, 141, 296, 447
Sfr303I	CCGCGG	1 cut(s)	313
SgrBI	CCGCGG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	314
SmaI	CCCGGG	1 cut(s)	27
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	2 cut(s)	98, 452
SsiI	CCGC	6 cut(s)	310, 312, 335, 522, 525, 552
SspMI	CTAG	2 cut(s)	39, 416
StyD4I	CCNGG	3 cut(s)	24, 25, 161
TaaI	ACNGT	2 cut(s)	286, 356
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	98, 452
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	4 cut(s)	312, 525, 528, 555
TfiI	GAWTC	2 cut(s)	274, 374
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	361
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	314
XmaI	CCCGGG	1 cut(s)	25
XspI	CTAG	2 cut(s)	39, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.