AT5G11420

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009179
Physical Location & Seq
Forward (+)
3644547 .. 3647411
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11420.1

Sequence Viewer

Length: 1101 bp
ATGAAAGGAGGCAGCCTCTCGTTTCTCTTCGTTCTCCTAATCGCCACCATCACTTCCGTCATTTGCTTCAGTGACGGGATGTTACCAAACGGCGACTTTGAACTAGGACCAAAACCATCGGACATGAAAGGAACGCAAGTAATAAACAAGAAGGCGATTCCTAGCTGGGAGCTTTCAGGCTTCGTCGAATACATAAAGTCCGGTCAAAAACAAGGAGACATGCTTCTCGTAGTCCCGGCCGGAAAGTTCGCAATCCGGCTAGGCAACGAGGCATCGATCAAACAAAGACTTAACGTTACAAAAGGAATGTATTACTCACTGACGTTCAGTGCCGCAAGGACATGTGCCCAAGACGAACGGCTCAACATATCGGTGGCACCTGACTCAGGCGTTATTCCTATACAGACGGTGTACAGTAGCAGTGGATGGGACCTTTACGCATGGGCGTTCCAAGCCGAGAGTAACGTGGCAGAGATCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGACCACTCATTGATGGTGTGGCAATCAAAGCTCTATACCCTCCTCGGCCCACCAATAAGAATATATTGAAGAACGGAGGATTTGAAGAAGGTCCCTACGTACTCCCAAACGCAACAACCGGCGTTCTGGTTCCTCCCTTTATAGAAGATGACCACTCTCCTTTACCCGCGTGGATGGTCGAATCACTCAAAGCCATCAAATACGTTGATGTCGAGCATTTCTCGGTCCCACAAGGCCGTCGAGCCGTGGAGCTAGTGGCAGGCAAAGAAAGCGCAATCGCTCAGGTAGCTAGGACCGTTGTGGGAAAAACTTACGTGCTTTCGTTTGCGGTTGGAGATGCTAACAATGCTTGCCAAGGATCGATGGTGGTCGAGGCATTTGCGGGAAAAGACACTCTAAAGGTACCTTATGAGTCTCGAGGCAAAGGAGGGTTCAAACGCGCTTCTCTACGGTTTGTGGCGGTTTCGACCCGCACAAGAGTTATGTTTTACAGCACATTTTACTCGATGAGAAGCGATGATTTCTCATCACTGTGTGGGCCCGTGATCGATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

366

Amino Acids

39.64

Weight (kDa)

7.57

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 26 - 182 3.6e-71 Protein of unknown function (DUF642)
DUF642 PF04862 194 - 360 2.2e-14 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32460 AT4G32460 AT4G32460 AT4G32460 AT5G11420 AT5G25460
fragaria_vesca FvH4_2g29680
malus_domestica MD08G1143200.v1.1 MD15G1120000.v1.1
prunus_persica Prupe.1G472800_v2.0.a1
pyrus_communis pycom08g12190 pycom15g10810
rosa_chinensis RchiOBHm_Chr6g0298661
rosa_laevigata RLG00000011495
rosa_multiflora Rmu_sc0008099.1_g000008
rosa_roxburghii Rroxscaffold_7G00169440
rosa_rugosa Rorug06G0281900 Rorug06G0282000
rosa_samantha Rh6AG393500 Rh6BG401300 Rh6DG393900
rosa_wichuraiana Rw6G034410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 919
AccB1I GGYRCC 2 cut(s) 376, 919
AccII CGCG 2 cut(s) 686, 957
AciI CCGC 6 cut(s) 333, 684, 845, 899, 977, 988
AclI AACGTT 1 cut(s) 294
AclWI GGATC 2 cut(s) 500, 883
AcoI YGGCCR 1 cut(s) 237
AcuI CTGAAG 1 cut(s) 52
AdeI CACNNNGTG 1 cut(s) 1052
AfaI GTAC 3 cut(s) 413, 618, 921
AfiI CCNNNNNNNGG 2 cut(s) 386, 515
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 4 cut(s) 101, 586, 602, 952
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 6 cut(s) 165, 172, 548, 769, 806, 1078
AluI AGCT 6 cut(s) 165, 172, 548, 769, 806, 1078
Alw21I GWGCWC 1 cut(s) 1090
Alw26I GTCTC 2 cut(s) 210, 936
AlwI GGATC 2 cut(s) 500, 883
Ama87I CYCGRG 1 cut(s) 933
AoxI GGCC 4 cut(s) 237, 563, 751, 1055
ApaI GGGCCC 1 cut(s) 1059
ApeKI GCWGC 1 cut(s) 12
Asp718I GGTACC 1 cut(s) 919
AspLEI GCGC 2 cut(s) 791, 959
AspS9I GGNCC 9 cut(s) 107, 430, 518, 564, 608, 742, 810, 1055, 1056
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 506
AvaI CYCGRG 1 cut(s) 933
AvaII GGWCC 6 cut(s) 107, 430, 518, 608, 742, 810
BaeGI GKGCMC 2 cut(s) 349, 1059
BanI GGYRCC 2 cut(s) 376, 919
BanII GRGCYC 1 cut(s) 1059
Bbv12I GWGCWC 1 cut(s) 1090
BbvI GCAGC 1 cut(s) 24
BccI CCATC 7 cut(s) 56, 124, 420, 524, 685, 719, 874
BceAI ACGGC 5 cut(s) 106, 374, 738, 746, 1081
BcgI CGANNNNNNTGC 2 cut(s) 878, 912
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 210, 936
BfaI CTAG 5 cut(s) 104, 162, 260, 770, 807
BisI GCNGC 2 cut(s) 13, 333
BlsI GCNGC 2 cut(s) 14, 334
Bme1390I CCNGG 2 cut(s) 236, 492
Bme18I GGWCC 6 cut(s) 107, 430, 518, 608, 742, 810
BmeT110I CYCGRG 1 cut(s) 933
BmgT120I GGNCC 9 cut(s) 107, 430, 518, 564, 608, 742, 810, 1055, 1056
BmiI GGNNCC 7 cut(s) 378, 431, 610, 648, 744, 921, 1057
BmrFI CCNGG 2 cut(s) 236, 492
BmsI GCATC 2 cut(s) 281, 844
BplI GAGNNNNNCTC 3 cut(s) 32, 722, 754
Bpu10I CCTNAGC 1 cut(s) 798
BpuMI CCSGG 1 cut(s) 236
Bsa29I ATCGAT 3 cut(s) 275, 878, 1065
BsaAI YACGTR 2 cut(s) 616, 832
BsaJI CCNNGG 3 cut(s) 560, 762, 871
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 515
Bse118I RCCGGY 1 cut(s) 635
BseBI CCWGG 1 cut(s) 492
BseCI ATCGAT 3 cut(s) 275, 878, 1065
BseDI CCNNGG 3 cut(s) 560, 762, 871
BseGI GGATG 3 cut(s) 84, 431, 696
BseLI CCNNNNNNNGG 2 cut(s) 386, 515
BseMII CTCAG 3 cut(s) 399, 812, 1096
BseRI GAGGAG 3 cut(s) 512, 549, 1070
BseSI GKGCMC 2 cut(s) 349, 1059
BseX3I CGGCCG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 165
Bsh1236I CGCG 2 cut(s) 686, 957
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 239, 565, 753, 1057
BshNI GGYRCC 2 cut(s) 376, 919
BshVI ATCGAT 3 cut(s) 275, 878, 1065
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 1090
BsiHKCI CYCGRG 1 cut(s) 933
BsiSI CCGG 5 cut(s) 201, 236, 240, 256, 636
BslFI GGGAC 4 cut(s) 218, 443, 594, 728
BslI CCNNNNNNNGG 2 cut(s) 386, 515
BsmAI GTCTC 2 cut(s) 210, 936
BsmFI GGGAC 4 cut(s) 218, 443, 594, 728
BsnI GGCC 4 cut(s) 239, 565, 753, 1057
BsoBI CYCGRG 1 cut(s) 933
Bsp120I GGGCCC 1 cut(s) 1055
Bsp1286I GDGCHC 3 cut(s) 349, 1059, 1090
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 5 cut(s) 276, 474, 505, 875, 1062
BspACI CCGC 6 cut(s) 333, 684, 845, 899, 977, 988
BspANI GGCC 4 cut(s) 239, 565, 753, 1057
BspCNI CTCAG 3 cut(s) 398, 811, 1095
BspDI ATCGAT 3 cut(s) 275, 878, 1065
BspFNI CGCG 2 cut(s) 686, 957
BspLI GGNNCC 7 cut(s) 378, 431, 610, 648, 744, 921, 1057
BspPI GGATC 2 cut(s) 500, 883
BspT107I GGYRCC 2 cut(s) 376, 919
BsrFI RCCGGY 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 3 cut(s) 560, 762, 871
BssMI GATC 5 cut(s) 276, 474, 505, 875, 1062
BssT1I CCWWGG 1 cut(s) 871
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 5 cut(s) 409, 416, 814, 969, 1050
Bst6I CTCTTC 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 411
BstBAI YACGTR 2 cut(s) 616, 832
BstC8I GCNNGC 2 cut(s) 778, 868
BstDEI CTNAG 3 cut(s) 385, 798, 1082
BstDSI CCRYGG 1 cut(s) 762
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 3 cut(s) 84, 431, 696
BstFNI CGCG 2 cut(s) 686, 957
BstHHI GCGC 2 cut(s) 791, 959
BstKTI GATC 5 cut(s) 279, 477, 508, 878, 1065
BstMAI GTCTC 2 cut(s) 210, 936
BstMBI GATC 5 cut(s) 276, 474, 505, 875, 1062
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 5 cut(s) 452, 545, 786, 803, 863
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 2 cut(s) 223, 345
BstSCI CCNGG 2 cut(s) 234, 490
BstSLI GKGCMC 2 cut(s) 349, 1059
BstSNI TACGTA 1 cut(s) 616
BstUI CGCG 2 cut(s) 686, 957
BstV1I GCAGC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BstZI CGGCCG 1 cut(s) 237
Bsu15I ATCGAT 3 cut(s) 275, 878, 1065
BsuRI GGCC 4 cut(s) 239, 565, 753, 1057
BsuTUI ATCGAT 3 cut(s) 275, 878, 1065
BtgI CCRYGG 1 cut(s) 762
BtgZI GCGATG 1 cut(s) 1047
BtsCI GGATG 3 cut(s) 84, 431, 696
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 6 cut(s) 76, 317, 334, 427, 1046, 1090
Cac8I GCNNGC 2 cut(s) 778, 868
CfoI GCGC 2 cut(s) 791, 959
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 9 cut(s) 107, 430, 518, 564, 608, 742, 810, 1055, 1056
ClaI ATCGAT 3 cut(s) 275, 878, 1065
Csp6I GTAC 3 cut(s) 412, 617, 920
CviAII CATG 4 cut(s) 124, 220, 342, 441
CviQI GTAC 3 cut(s) 412, 617, 920
DdeI CTNAG 3 cut(s) 385, 798, 1082
DpnI GATC 5 cut(s) 278, 476, 507, 877, 1064
DpnII GATC 5 cut(s) 276, 474, 505, 875, 1062
DraIII CACNNNGTG 1 cut(s) 1052
EaeI YGGCCR 1 cut(s) 237
EagI CGGCCG 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 237
Eco105I TACGTA 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 871
Eco24I GRGCYC 1 cut(s) 1059
Eco47I GGWCC 6 cut(s) 107, 430, 518, 608, 742, 810
Eco52I CGGCCG 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 933
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoO109I RGGNCCY 2 cut(s) 430, 608
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 871
EcoT38I GRGCYC 1 cut(s) 1059
ErhI CCWWGG 1 cut(s) 871
FaeI CATG 4 cut(s) 127, 223, 345, 444
FaqI GGGAC 4 cut(s) 218, 443, 594, 728
FatI CATG 4 cut(s) 123, 219, 341, 440
FauI CCCGC 3 cut(s) 691, 892, 995
Fnu4HI GCNGC 2 cut(s) 13, 333
FokI GGATG 3 cut(s) 91, 438, 703
FriOI GRGCYC 1 cut(s) 1059
Fsp4HI GCNGC 2 cut(s) 13, 333
FspBI CTAG 5 cut(s) 104, 162, 260, 770, 807
GlaI GCGC 2 cut(s) 790, 958
GluI GCNGC 2 cut(s) 13, 333
GsaI CCCAGC 1 cut(s) 169
HaeIII GGCC 4 cut(s) 239, 565, 753, 1057
HapII CCGG 5 cut(s) 201, 236, 240, 256, 636
HhaI GCGC 2 cut(s) 791, 959
Hin1II CATG 4 cut(s) 127, 223, 345, 444
Hin6I GCGC 2 cut(s) 789, 957
HinP1I GCGC 2 cut(s) 789, 957
HinfI GANTC 5 cut(s) 157, 383, 481, 698, 929
HpaII CCGG 5 cut(s) 201, 236, 240, 256, 636
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 2 cut(s) 412, 518
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 478, 933
Hpy8I GTNNAC 2 cut(s) 412, 518
Hpy99I CGWCG 2 cut(s) 188, 759
HpyAV CCTTC 2 cut(s) 145, 599
HpyCH4III ACNGT 5 cut(s) 409, 416, 814, 969, 1050
HpyCH4IV ACGT 6 cut(s) 294, 323, 465, 615, 720, 831
HpyF10VI GCNNNNNNNGC 5 cut(s) 452, 545, 786, 803, 863
HpyF3I CTNAG 3 cut(s) 385, 798, 1082
HpySE526I ACGT 6 cut(s) 294, 323, 465, 615, 720, 831
Hsp92II CATG 4 cut(s) 127, 223, 345, 444
HspAI GCGC 2 cut(s) 789, 957
KpnI GGTACC 1 cut(s) 923
Kzo9I GATC 5 cut(s) 276, 474, 505, 875, 1062
LmnI GCTCC 3 cut(s) 169, 766, 1083
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 281, 844
MaeI CTAG 5 cut(s) 104, 162, 260, 770, 807
MaeII ACGT 6 cut(s) 294, 323, 465, 615, 720, 831
MaeIII GTNAC 4 cut(s) 71, 81, 295, 461
MalI GATC 5 cut(s) 278, 476, 507, 877, 1064
MboI GATC 5 cut(s) 276, 474, 505, 875, 1062
MboII GAAGA 5 cut(s) 19, 515, 598, 614, 674
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 3 cut(s) 349, 1059, 1090
MlyI GAGTC 2 cut(s) 377, 938
MmeI TCCRAC 1 cut(s) 829
MseI TTAA 2 cut(s) 291, 1074
MslI CAYNNNNRTG 2 cut(s) 371, 1048
MspI CCGG 5 cut(s) 201, 236, 240, 256, 636
MspR9I CCNGG 2 cut(s) 236, 492
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 2 cut(s) 686, 957
MwoI GCNNNNNNNGC 5 cut(s) 452, 545, 786, 803, 863
NciI CCSGG 1 cut(s) 236
NdeII GATC 5 cut(s) 276, 474, 505, 875, 1062
NlaIII CATG 4 cut(s) 127, 223, 345, 444
NlaIV GGNNCC 7 cut(s) 378, 431, 610, 648, 744, 921, 1057
NmeAIII GCCGAG 2 cut(s) 481, 541
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 2 cut(s) 223, 345
PaeR7I CTCGAG 1 cut(s) 933
PciI ACATGT 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 726
PfeI GAWTC 3 cut(s) 157, 481, 698
PkrI GCNGC 2 cut(s) 14, 334
PleI GAGTC 2 cut(s) 377, 937
PpsI GAGTC 2 cut(s) 377, 937
Ppu21I YACGTR 2 cut(s) 616, 832
PpuMI RGGWCCY 2 cut(s) 430, 608
PscI ACATGT 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 294
Psp5II RGGWCCY 2 cut(s) 430, 608
Psp6I CCWGG 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 7 cut(s) 378, 431, 610, 648, 744, 921, 1057
PspOMI GGGCCC 1 cut(s) 1055
PspPI GGNCC 9 cut(s) 107, 430, 518, 564, 608, 742, 810, 1055, 1056
PspPPI RGGWCCY 2 cut(s) 430, 608
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 3 cut(s) 413, 618, 921
RsaNI GTAC 3 cut(s) 412, 617, 920
RseI CAYNNNNRTG 2 cut(s) 371, 1048
SaqAI TTAA 2 cut(s) 291, 1074
SatI GCNGC 2 cut(s) 13, 333
Sau3AI GATC 5 cut(s) 276, 474, 505, 875, 1062
Sau96I GGNCC 9 cut(s) 107, 430, 518, 564, 608, 742, 810, 1055, 1056
SchI GAGTC 2 cut(s) 377, 938
ScrFI CCNGG 2 cut(s) 236, 492
SduI GDGCHC 3 cut(s) 349, 1059, 1090
SfaNI GCATC 2 cut(s) 281, 844
Sfr274I CTCGAG 1 cut(s) 933
SinI GGWCC 6 cut(s) 107, 430, 518, 608, 742, 810
SlaI CTCGAG 1 cut(s) 933
SmiMI CAYNNNNRTG 2 cut(s) 371, 1048
SmlI CTYRAG 1 cut(s) 933
SmoI CTYRAG 1 cut(s) 933
SnaBI TACGTA 1 cut(s) 616
SsiI CCGC 6 cut(s) 333, 684, 845, 899, 977, 988
SspMI CTAG 5 cut(s) 104, 162, 260, 770, 807
StyD4I CCNGG 2 cut(s) 234, 490
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 5 cut(s) 409, 416, 814, 969, 1050
TaiI ACGT 6 cut(s) 297, 326, 468, 618, 723, 834
TaqII GACCGA 1 cut(s) 730
TatI WGTACW 1 cut(s) 411
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 3 cut(s) 157, 481, 698
Tru1I TTAA 2 cut(s) 291, 1074
Tru9I TTAA 2 cut(s) 291, 1074
TscAI CASTG 6 cut(s) 76, 324, 334, 427, 1053, 1090
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 17, 140, 473
TspGWI ACGGA 2 cut(s) 46, 606
TspRI CASTG 6 cut(s) 76, 324, 334, 427, 1053, 1090
VpaK11BI GGWCC 6 cut(s) 107, 430, 518, 608, 742, 810
XagI CCTNNNNNAGG 1 cut(s) 384
XceI RCATGY 2 cut(s) 223, 345
XhoI CTCGAG 1 cut(s) 933
XspI CTAG 5 cut(s) 104, 162, 260, 770, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.