AT5G11500

Domain of unknown function (DUF814)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013078
Physical Location & Seq
Forward (+)
3676548 .. 3679738
3191 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11500.2

Sequence Viewer

Length: 648 bp
ATGGTTTTCTACTTCAAGGCCCGTCCTGATGCTGGCGACTACACCATCTTCATGGGGCTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTTCACGTGGATAAAATGTCGTCAGCTCATGTTTACTTGAGGCTTCATAGAGGCCAAAGTTTTGATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATTCAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAAACTGCCTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATCAGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGACTGAACAAAACAAAAGTTGAAAGAACCCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCCGCAGAAAGGGCAGAGAGGAAACAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAATCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGACATTGCTTCAAGCAACAAATCGCTTCAAGAACTTGAAGACGATTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF814

Protein Analysis

215

Amino Acids

25.1

Weight (kDa)

7.79

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NFACT-R_1 PF05670 1 - 112 1.4e-36 NFACT protein RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11500 AT5G11500
fragaria_vesca FvH4_2g36060
malus_domestica MD08G1117900.v1.1 MD15G1097400.v1.1
prunus_persica Prupe.1G452200_v2.0.a1 Prupe.1G452200_v2.0.a1
pyrus_communis pycom08g09850 pycom15g08930
rosa_chinensis RchiOBHm_Chr6g0305791
rosa_laevigata RLG00000010858
rosa_roxburghii Rroxscaffold_7G00162330
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455600 Rh6BG445500 Rh6CG469600 Rh6DG456300
rosa_wichuraiana Rw6G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 1 cut(s) 456
AclI AACGTT 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 123
AcvI CACGTG 1 cut(s) 121
AdeI CACNNNGTG 1 cut(s) 279
AfaI GTAC 2 cut(s) 92, 272
AfiI CCNNNNNNNGG 2 cut(s) 32, 462
AgsI TTSAA 8 cut(s) 16, 239, 292, 339, 413, 606, 623, 632
AluBI AGCT 4 cut(s) 82, 140, 217, 227
AluI AGCT 4 cut(s) 82, 140, 217, 227
Alw21I GWGCWC 2 cut(s) 84, 214
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 2 cut(s) 18, 166
AspS9I GGNCC 3 cut(s) 19, 282, 346
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 2 cut(s) 282, 346
BanII GRGCYC 1 cut(s) 84
BbrPI CACGTG 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 2 cut(s) 84, 214
BccI CCATC 2 cut(s) 53, 337
BceAI ACGGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 456
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 457
Bme18I GGWCC 2 cut(s) 282, 346
BmgT120I GGNCC 3 cut(s) 19, 282, 346
BmsI GCATC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 172, 542
BsaAI YACGTR 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 278, 306
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 462
Bse3DI GCAATG 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 278, 306
BseGI GGATG 2 cut(s) 316, 584
BseLI CCNNNNNNNGG 2 cut(s) 32, 462
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 3 cut(s) 227, 419, 476
BseRI GAGGAG 2 cut(s) 92, 562
BshFI GGCC 2 cut(s) 20, 168
BsiHKAI GWGCWC 2 cut(s) 84, 214
BsiSI CCGG 1 cut(s) 349
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 2 cut(s) 32, 462
BsmFI GGGAC 1 cut(s) 573
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 20, 168
Bsp1286I GDGCHC 2 cut(s) 84, 214
Bsp13I TCCGGA 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 1 cut(s) 424
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 456
BspANI GGCC 2 cut(s) 20, 168
BspCNI CTCAG 3 cut(s) 226, 420, 477
BspEI TCCGGA 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 597
BsrGI TGTACA 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 278, 306
BssMI GATC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 501
BstAPI GCANNNNNTGC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 3 cut(s) 213, 428, 485
BstDSI CCRYGG 2 cut(s) 278, 306
BstF5I GGATG 2 cut(s) 316, 584
BstKTI GATC 1 cut(s) 427
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 2 cut(s) 452, 464
BstV2I GAAGAC 1 cut(s) 639
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 2 cut(s) 20, 168
BtgI CCRYGG 2 cut(s) 278, 306
BtsCI GGATG 2 cut(s) 316, 584
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 19, 282, 346
Csp6I GTAC 2 cut(s) 91, 271
CviAII CATG 4 cut(s) 52, 143, 307, 643
CviQI GTAC 2 cut(s) 91, 271
DdeI CTNAG 3 cut(s) 213, 428, 485
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
DraIII CACNNNGTG 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 282, 346
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 123
Eco72I CACGTG 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 55, 146, 310, 646
FaiI YATR 5 cut(s) 53, 144, 162, 308, 644
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 573
FatI CATG 4 cut(s) 51, 142, 306, 642
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 2 cut(s) 323, 571
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 2 cut(s) 20, 168
HapII CCGG 1 cut(s) 349
Hin1II CATG 4 cut(s) 55, 146, 310, 646
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 1 cut(s) 372
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 1 cut(s) 349
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 5 cut(s) 148, 253, 271, 273, 388
Hpy188I TCNGA 4 cut(s) 359, 429, 486, 541
Hpy188III TCNNGA 4 cut(s) 26, 70, 349, 623
Hpy8I GTNNAC 5 cut(s) 148, 253, 271, 273, 388
HpyAV CCTTC 2 cut(s) 185, 520
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 3 cut(s) 120, 258, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 464
HpyF3I CTNAG 3 cut(s) 213, 428, 485
HpySE526I ACGT 3 cut(s) 120, 258, 502
Hsp92II CATG 4 cut(s) 55, 146, 310, 646
Kpn2I TCCGGA 1 cut(s) 348
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 7 cut(s) 18, 39, 97, 114, 185, 362, 435
LweI GCATC 1 cut(s) 19
MaeII ACGT 3 cut(s) 120, 258, 502
MaeIII GTNAC 2 cut(s) 551, 568
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 7 cut(s) 40, 116, 304, 505, 508, 518, 644
MhlI GDGCHC 2 cut(s) 84, 214
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 2 cut(s) 309, 612
MnlI CCTC 9 cut(s) 70, 147, 158, 196, 313, 465, 480, 525, 540
MroI TCCGGA 1 cut(s) 348
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 1 cut(s) 349
Mva1269I GAATGC 1 cut(s) 457
MwoI GCNNNNNNNGC 2 cut(s) 452, 464
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 424
NlaIII CATG 4 cut(s) 55, 146, 310, 646
NmeAIII GCCGAG 1 cut(s) 460
PctI GAATGC 1 cut(s) 457
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 380
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 1 cut(s) 380
Ppu21I YACGTR 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 84
Psp1406I AACGTT 1 cut(s) 258
PspCI CACGTG 1 cut(s) 121
PspPI GGNCC 3 cut(s) 19, 282, 346
RsaI GTAC 2 cut(s) 92, 272
RsaNI GTAC 2 cut(s) 91, 271
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 3 cut(s) 19, 282, 346
SchI GAGTC 1 cut(s) 381
SduI GDGCHC 2 cut(s) 84, 214
SetI ASST 9 cut(s) 84, 123, 142, 196, 219, 229, 252, 261, 505
SfaNI GCATC 1 cut(s) 19
SinI GGWCC 2 cut(s) 282, 346
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 151, 521
SmoI CTYRAG 2 cut(s) 151, 521
Sse9I AATT 1 cut(s) 334
SsiI CCGC 1 cut(s) 456
SstI GAGCTC 1 cut(s) 84
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 3 cut(s) 123, 261, 505
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 334
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 458
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 453
TspDTI ATGAA 4 cut(s) 40, 149, 393, 631
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 453
VpaK11BI GGWCC 2 cut(s) 282, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.